Wall clock time and date at job start Fri Apr 10 2020 18:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34226 * 117.00296 * 2 1 4 4 O 1.20829 * 120.00104 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00135 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.71613 * 28.35458 * 5 3 2 7 7 C 1.52966 * 109.59979 * 267.99370 * 5 3 2 8 8 N 1.46012 * 110.04719 * 189.93906 * 7 5 3 9 9 C 1.33719 * 122.92475 * 18.15635 * 8 7 5 10 10 O 1.21285 * 118.62495 * 178.31702 * 9 8 7 11 11 C 1.50261 * 122.75146 * 358.29768 * 9 8 7 12 12 N 1.46901 * 109.97691 * 17.21941 * 11 9 8 13 13 C 1.46898 * 110.99651 * 186.33302 * 12 11 9 14 14 C 1.50703 * 109.46903 * 63.66559 * 13 12 11 15 15 C 1.38639 * 119.74808 * 90.00308 * 14 13 12 16 16 C 1.37619 * 120.24672 * 180.02562 * 15 14 13 17 17 C 1.40705 * 119.74531 * 0.26725 * 16 15 14 18 18 C 1.41402 * 120.24627 * 179.70300 * 17 16 15 19 19 H 1.08001 * 119.99486 * 24.94632 * 18 17 16 20 20 C 1.39941 * 120.00308 * 204.94276 * 18 17 16 21 21 N 1.30820 * 119.99856 * 16.74476 * 20 18 17 22 22 Si 1.86804 * 119.99874 * 196.74346 * 20 18 17 23 23 H 1.48493 * 109.47059 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.46931 * 120.00152 * 22 20 18 25 25 H 1.48502 * 109.46789 * 240.00110 * 22 20 18 26 26 C 1.40721 * 119.51300 * 359.47656 * 17 16 15 27 27 C 1.37609 * 119.74220 * 0.50543 * 26 17 16 28 28 H 1.08995 * 109.46987 * 60.00192 * 1 2 3 29 29 H 1.08993 * 109.47390 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47298 * 300.00975 * 1 2 3 31 31 H 1.08992 * 109.37451 * 69.75832 * 7 5 3 32 32 H 1.09004 * 109.28200 * 310.05047 * 7 5 3 33 33 H 0.96995 * 118.54031 * 198.14207 * 8 7 5 34 34 H 1.09001 * 109.38113 * 257.06476 * 11 9 8 35 35 H 1.08998 * 109.29928 * 137.32560 * 11 9 8 36 36 H 1.09003 * 109.47607 * 303.66845 * 13 12 11 37 37 H 1.09001 * 109.47087 * 183.66329 * 13 12 11 38 38 H 1.07997 * 119.87544 * 359.97438 * 15 14 13 39 39 H 1.08005 * 120.12509 * 179.97438 * 16 15 14 40 40 H 0.97006 * 119.99950 * 179.97438 * 21 20 18 41 41 H 1.08004 * 120.12460 * 180.25299 * 26 17 16 42 42 H 1.08005 * 119.87944 * 179.74236 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9810 0.3921 -0.4864 7 6 4.0756 1.3523 1.4409 8 7 5.5019 1.6646 1.4514 9 6 6.1392 2.1873 0.3985 10 8 7.3198 2.4450 0.5031 11 6 5.4542 2.4684 -0.9090 12 7 3.9976 2.4840 -0.7192 13 6 3.3004 2.6073 -2.0064 14 6 3.5892 1.3939 -2.8522 15 6 2.7601 0.2857 -2.7711 16 6 3.0145 -0.8280 -3.5385 17 6 4.1242 -0.8411 -4.4036 18 6 4.3991 -1.9821 -5.1922 19 1 3.6018 -2.6615 -5.4553 20 6 5.7041 -2.2311 -5.6317 21 7 6.7129 -1.6210 -5.0647 22 14 6.0057 -3.4346 -7.0282 23 1 4.7085 -3.9872 -7.4942 24 1 6.6770 -2.7319 -8.1509 25 1 6.8713 -4.5420 -6.5489 26 6 4.9556 0.2915 -4.4817 27 6 4.6819 1.3942 -3.7054 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 3.9114 0.3945 1.9345 32 1 3.5309 2.1317 1.9738 33 1 6.0096 1.4851 2.2581 34 1 5.7170 1.6934 -1.6290 35 1 5.7805 3.4378 -1.2855 36 1 3.6477 3.5017 -2.5236 37 1 2.2270 2.6819 -1.8324 38 1 1.9120 0.2961 -2.1026 39 1 2.3676 -1.6904 -3.4734 40 1 7.6176 -1.7939 -5.3691 41 1 5.8076 0.2937 -5.1455 42 1 5.3210 2.2631 -3.7606 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447923913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:19 Heat of formation + Delta-G solvation = -82.358893 kcal Electronic energy + Delta-G solvation = -27734.421276 eV Core-core repulsion = 23872.671200 eV Total energy + Delta-G solvation = -3861.750075 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.15270 -39.76229 -38.14731 -36.96029 -36.09905 -34.85822 -33.51915 -30.82629 -30.28275 -29.42834 -27.84447 -27.57625 -25.35723 -24.46554 -22.80177 -21.28117 -21.11162 -20.04098 -19.06310 -17.96422 -17.54741 -17.23997 -16.79036 -16.31867 -15.98309 -15.43050 -15.30919 -14.79781 -14.40906 -14.37217 -13.95862 -13.85363 -13.47613 -13.28737 -13.06097 -12.85963 -12.57059 -12.34409 -12.05529 -11.94099 -11.70490 -11.59742 -11.38651 -11.16134 -11.03082 -10.79474 -10.66556 -10.52838 -10.26021 -9.87142 -9.77948 -9.51677 -9.26729 -9.13952 -8.27936 -7.61288 -7.46930 -6.88010 -4.48912 2.13051 2.52812 2.60134 2.73029 2.91763 3.01112 3.04771 3.07025 3.28820 3.84159 3.96239 4.49578 4.55252 4.61313 4.81550 5.07491 5.10205 5.16758 5.23921 5.39883 5.49523 5.54841 5.67860 5.71351 5.80099 5.93356 6.14696 6.20969 6.27317 6.40854 6.64087 6.79683 6.86613 6.93082 6.97665 7.15329 7.22506 7.25107 7.46081 7.69737 7.78525 7.92049 7.94415 8.15959 8.24590 8.50617 8.76371 8.82920 10.05995 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013243 B = 0.004651 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.859483 B = 6018.639357 C = 7244.330665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.352 6.352 3 C 0.483 3.517 4 O -0.488 6.488 5 C 0.070 3.930 6 H 0.098 0.902 7 C 0.130 3.870 8 N -0.717 5.717 9 C 0.530 3.470 10 O -0.553 6.553 11 C 0.031 3.969 12 N -0.504 5.504 13 C 0.097 3.903 14 C -0.270 4.270 15 C -0.082 4.082 16 C -0.222 4.222 17 C 0.114 3.886 18 C -0.458 4.458 19 H 0.079 0.921 20 C 0.075 3.925 21 N -0.789 5.789 22 Si 0.908 3.092 23 H -0.260 1.260 24 H -0.271 1.271 25 H -0.274 1.274 26 C -0.165 4.165 27 C -0.088 4.088 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.402 0.598 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.282 0.718 41 H 0.119 0.881 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.861 2.477 9.607 12.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.268 6.268 3 C 0.324 3.676 4 O -0.373 6.373 5 C -0.040 4.040 6 H 0.116 0.884 7 C 0.004 3.996 8 N -0.370 5.370 9 C 0.317 3.683 10 O -0.430 6.430 11 C -0.098 4.098 12 N -0.230 5.230 13 C -0.029 4.029 14 C -0.272 4.272 15 C -0.101 4.101 16 C -0.242 4.242 17 C 0.112 3.888 18 C -0.487 4.487 19 H 0.097 0.903 20 C -0.143 4.143 21 N -0.413 5.413 22 Si 0.733 3.267 23 H -0.184 1.184 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.184 4.184 27 C -0.107 4.107 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.238 0.762 34 H 0.117 0.883 35 H 0.135 0.865 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.136 0.864 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.469 3.398 9.762 12.194 hybrid contribution 0.315 -1.406 -0.879 1.688 sum -6.153 1.993 8.883 10.988 Atomic orbital electron populations 1.23278 0.76241 1.03838 1.02492 1.86575 1.23412 1.33048 1.83755 1.22901 0.90923 0.81547 0.72259 1.90649 1.66654 1.36127 1.43912 1.21490 0.88764 0.97090 0.96631 0.88422 1.21297 0.81652 1.02051 0.94579 1.45402 1.09867 1.65179 1.16578 1.20285 0.86909 0.75545 0.85572 1.90755 1.16033 1.52939 1.83316 1.22431 0.87165 1.05625 0.94624 1.63128 1.04512 1.33528 1.21856 1.21178 0.99145 0.96668 0.85918 1.19632 1.02061 0.97535 1.08013 1.20482 0.97249 0.93810 0.98514 1.20939 1.02929 0.97977 1.02311 1.17668 0.90100 0.92162 0.88897 1.19671 0.94018 1.07470 1.27567 0.90317 1.25938 0.95820 0.96339 0.96210 1.69810 1.00245 1.36434 1.34843 0.86253 0.79455 0.80102 0.80929 1.18358 1.19602 1.19896 1.21342 1.02443 0.92456 1.02166 1.20559 0.95914 0.97419 0.96827 0.91692 0.87978 0.91979 0.89340 0.90353 0.76201 0.88298 0.86518 0.90379 0.89729 0.89687 0.89006 0.90705 0.86359 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.35 -4.82 9.20 -39.25 -0.36 -5.18 16 3 C 0.48 7.15 4.13 36.01 0.15 7.30 16 4 O -0.49 -7.98 14.61 -18.75 -0.27 -8.26 16 5 C 0.07 1.04 1.76 -68.72 -0.12 0.91 16 6 H 0.10 1.64 6.92 -51.93 -0.36 1.28 16 7 C 0.13 1.48 6.69 -4.32 -0.03 1.45 16 8 N -0.72 -9.10 5.52 -61.07 -0.34 -9.43 16 9 C 0.53 8.56 7.81 -11.67 -0.09 8.47 16 10 O -0.55 -10.68 17.83 5.55 0.10 -10.58 16 11 C 0.03 0.51 5.25 -5.19 -0.03 0.48 16 12 N -0.50 -7.92 4.64 -230.96 -1.07 -8.99 16 13 C 0.10 1.65 5.11 -4.98 -0.03 1.62 16 14 C -0.27 -5.36 4.08 -104.33 -0.43 -5.78 16 15 C -0.08 -1.69 8.01 -39.66 -0.32 -2.01 16 16 C -0.22 -5.13 9.80 -38.88 -0.38 -5.51 16 17 C 0.11 2.89 5.57 -106.82 -0.59 2.30 16 18 C -0.46 -11.64 9.06 -37.74 -0.34 -11.98 16 19 H 0.08 1.93 7.90 -52.49 -0.41 1.52 16 20 C 0.08 1.82 5.16 -17.35 -0.09 1.73 16 21 N -0.79 -19.69 10.94 55.55 0.61 -19.09 16 22 Si 0.91 18.05 29.59 -169.99 -5.03 13.02 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 C -0.16 -4.04 8.69 -38.87 -0.34 -4.38 16 27 C -0.09 -1.89 7.76 -39.67 -0.31 -2.20 16 28 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 33 H 0.40 4.25 8.84 -40.82 -0.36 3.89 16 34 H 0.10 1.81 5.66 -51.93 -0.29 1.52 16 35 H 0.12 1.75 8.14 -51.93 -0.42 1.32 16 36 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 37 H 0.08 1.50 5.59 -51.93 -0.29 1.21 16 38 H 0.09 1.60 4.80 -52.49 -0.25 1.35 16 39 H 0.09 2.02 8.06 -52.48 -0.42 1.60 16 40 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 41 H 0.12 3.04 6.17 -52.48 -0.32 2.72 16 42 H 0.09 1.72 7.97 -52.48 -0.42 1.31 16 LS Contribution 340.15 15.07 5.13 5.13 Total: -1.00 -29.58 340.15 -8.34 -37.92 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -5.22 Total: 11.61 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -1.87 Total: -6.15 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: -0.80 Total: -37.51 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.54 Total: -24.02 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.58 -8.34 -37.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447923913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.434 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds