Wall clock time and date at job start Fri Apr 10 2020 18:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34226 * 117.00296 * 2 1 4 4 O 1.20829 * 120.00104 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00135 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.71613 * 28.35458 * 5 3 2 7 7 C 1.52966 * 109.59979 * 267.99370 * 5 3 2 8 8 N 1.46012 * 110.04719 * 189.93906 * 7 5 3 9 9 C 1.33719 * 122.92475 * 18.15635 * 8 7 5 10 10 O 1.21285 * 118.62495 * 178.31702 * 9 8 7 11 11 C 1.50261 * 122.75146 * 358.29768 * 9 8 7 12 12 N 1.46901 * 109.97691 * 17.21941 * 11 9 8 13 13 C 1.46898 * 110.99651 * 186.33302 * 12 11 9 14 14 C 1.50703 * 109.46903 * 63.66559 * 13 12 11 15 15 C 1.38639 * 119.74808 * 90.00308 * 14 13 12 16 16 C 1.37619 * 120.24672 * 180.02562 * 15 14 13 17 17 C 1.40705 * 119.74531 * 0.26725 * 16 15 14 18 18 C 1.41402 * 120.24627 * 179.70300 * 17 16 15 19 19 H 1.08001 * 119.99486 * 24.94632 * 18 17 16 20 20 C 1.39941 * 120.00308 * 204.94276 * 18 17 16 21 21 N 1.30820 * 119.99856 * 16.74476 * 20 18 17 22 22 Si 1.86804 * 119.99874 * 196.74346 * 20 18 17 23 23 H 1.48493 * 109.47059 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.46931 * 120.00152 * 22 20 18 25 25 H 1.48502 * 109.46789 * 240.00110 * 22 20 18 26 26 C 1.40721 * 119.51300 * 359.47656 * 17 16 15 27 27 C 1.37609 * 119.74220 * 0.50543 * 26 17 16 28 28 H 1.08995 * 109.46987 * 60.00192 * 1 2 3 29 29 H 1.08993 * 109.47390 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47298 * 300.00975 * 1 2 3 31 31 H 1.08992 * 109.37451 * 69.75832 * 7 5 3 32 32 H 1.09004 * 109.28200 * 310.05047 * 7 5 3 33 33 H 0.96995 * 118.54031 * 198.14207 * 8 7 5 34 34 H 1.09001 * 109.38113 * 257.06476 * 11 9 8 35 35 H 1.08998 * 109.29928 * 137.32560 * 11 9 8 36 36 H 1.09003 * 109.47607 * 303.66845 * 13 12 11 37 37 H 1.09001 * 109.47087 * 183.66329 * 13 12 11 38 38 H 1.07997 * 119.87544 * 359.97438 * 15 14 13 39 39 H 1.08005 * 120.12509 * 179.97438 * 16 15 14 40 40 H 0.97006 * 119.99950 * 179.97438 * 21 20 18 41 41 H 1.08004 * 120.12460 * 180.25299 * 26 17 16 42 42 H 1.08005 * 119.87944 * 179.74236 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9810 0.3921 -0.4864 7 6 4.0756 1.3523 1.4409 8 7 5.5019 1.6646 1.4514 9 6 6.1392 2.1873 0.3985 10 8 7.3198 2.4450 0.5031 11 6 5.4542 2.4684 -0.9090 12 7 3.9976 2.4840 -0.7192 13 6 3.3004 2.6073 -2.0064 14 6 3.5892 1.3939 -2.8522 15 6 2.7601 0.2857 -2.7711 16 6 3.0145 -0.8280 -3.5385 17 6 4.1242 -0.8411 -4.4036 18 6 4.3991 -1.9821 -5.1922 19 1 3.6018 -2.6615 -5.4553 20 6 5.7041 -2.2311 -5.6317 21 7 6.7129 -1.6210 -5.0647 22 14 6.0057 -3.4346 -7.0282 23 1 4.7085 -3.9872 -7.4942 24 1 6.6770 -2.7319 -8.1509 25 1 6.8713 -4.5420 -6.5489 26 6 4.9556 0.2915 -4.4817 27 6 4.6819 1.3942 -3.7054 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 3.9114 0.3945 1.9345 32 1 3.5309 2.1317 1.9738 33 1 6.0096 1.4851 2.2581 34 1 5.7170 1.6934 -1.6290 35 1 5.7805 3.4378 -1.2855 36 1 3.6477 3.5017 -2.5236 37 1 2.2270 2.6819 -1.8324 38 1 1.9120 0.2961 -2.1026 39 1 2.3676 -1.6904 -3.4734 40 1 7.6176 -1.7939 -5.3691 41 1 5.8076 0.2937 -5.1455 42 1 5.3210 2.2631 -3.7606 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447923913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:18 Heat of formation + Delta-G solvation = -102.514479 kcal Electronic energy + Delta-G solvation = -27735.295287 eV Core-core repulsion = 23872.671200 eV Total energy + Delta-G solvation = -3862.624087 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.36626 -40.96690 -39.72748 -38.33818 -37.29949 -36.24129 -35.16207 -32.23636 -31.79764 -31.13672 -29.32962 -28.53931 -26.91111 -25.65489 -24.24950 -22.90799 -22.48851 -21.65638 -20.25984 -19.31378 -19.11681 -18.45677 -18.04248 -17.48878 -17.22997 -17.05384 -16.56063 -16.24092 -15.72524 -15.62459 -15.60843 -15.39184 -14.74729 -14.53378 -14.39982 -14.15950 -13.97463 -13.82109 -13.48279 -13.38739 -12.99817 -12.96565 -12.82896 -12.75236 -12.51025 -12.37970 -12.18061 -11.72167 -11.60870 -11.47406 -11.30430 -11.09447 -11.05262 -10.24320 -9.66582 -9.40231 -9.26830 -8.67268 -6.38054 0.86129 0.97047 1.08851 1.37028 1.43392 1.46693 1.51669 1.51970 2.17524 2.18308 2.58275 2.80961 3.45148 3.47166 3.69267 3.70418 3.96776 4.08954 4.24084 4.29681 4.33944 4.37618 4.39698 4.44392 4.51761 4.56494 4.68915 4.75448 4.91469 5.01441 5.11196 5.26863 5.27597 5.38571 5.49901 5.57716 5.66328 5.79105 5.91875 6.06520 6.06787 6.16978 6.34582 6.65737 6.66888 6.90820 6.98851 7.05655 8.28999 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013243 B = 0.004651 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.859483 B = 6018.639357 C = 7244.330665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.487 3.513 4 O -0.504 6.504 5 C 0.064 3.936 6 H 0.076 0.924 7 C 0.132 3.868 8 N -0.702 5.702 9 C 0.528 3.472 10 O -0.590 6.590 11 C 0.035 3.965 12 N -0.495 5.495 13 C 0.103 3.897 14 C -0.251 4.251 15 C -0.077 4.077 16 C -0.235 4.235 17 C 0.084 3.916 18 C -0.496 4.496 19 H 0.075 0.925 20 C 0.036 3.964 21 N -0.823 5.823 22 Si 0.980 3.020 23 H -0.258 1.258 24 H -0.265 1.265 25 H -0.266 1.266 26 C -0.189 4.189 27 C -0.086 4.086 28 H 0.058 0.942 29 H 0.128 0.872 30 H 0.076 0.924 31 H 0.123 0.877 32 H 0.096 0.904 33 H 0.415 0.585 34 H 0.075 0.925 35 H 0.127 0.873 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.288 0.712 41 H 0.098 0.902 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.014 2.657 11.005 13.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.329 3.671 4 O -0.391 6.391 5 C -0.047 4.047 6 H 0.094 0.906 7 C 0.007 3.993 8 N -0.355 5.355 9 C 0.315 3.685 10 O -0.471 6.471 11 C -0.095 4.095 12 N -0.221 5.221 13 C -0.024 4.024 14 C -0.254 4.254 15 C -0.096 4.096 16 C -0.254 4.254 17 C 0.082 3.918 18 C -0.525 4.525 19 H 0.093 0.907 20 C -0.179 4.179 21 N -0.449 5.449 22 Si 0.801 3.199 23 H -0.181 1.181 24 H -0.190 1.190 25 H -0.191 1.191 26 C -0.209 4.209 27 C -0.105 4.105 28 H 0.076 0.924 29 H 0.147 0.853 30 H 0.095 0.905 31 H 0.141 0.859 32 H 0.114 0.886 33 H 0.254 0.746 34 H 0.093 0.907 35 H 0.145 0.855 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.661 3.561 11.201 14.030 hybrid contribution 0.535 -1.391 -1.166 1.892 sum -7.126 2.170 10.035 12.497 Atomic orbital electron populations 1.23607 0.74261 1.05820 1.02927 1.86563 1.25372 1.32338 1.83291 1.22803 0.90745 0.81680 0.71908 1.90647 1.66927 1.36647 1.44844 1.21617 0.89209 0.95531 0.98311 0.90629 1.21507 0.80481 1.04592 0.92679 1.45298 1.10568 1.63441 1.16160 1.20234 0.86442 0.75642 0.86190 1.90741 1.17497 1.54857 1.83996 1.22364 0.87297 1.05382 0.94423 1.63133 1.04122 1.34110 1.20709 1.21153 0.99448 0.95615 0.86146 1.19974 1.00468 0.98285 1.06646 1.20692 0.97774 0.93156 0.97956 1.21101 1.02650 0.99097 1.02600 1.17984 0.91260 0.92643 0.89939 1.19882 0.94833 1.08223 1.29572 0.90672 1.26728 0.95091 0.97971 0.98092 1.69868 1.00751 1.38051 1.36203 0.85191 0.79292 0.77825 0.77635 1.18101 1.19008 1.19125 1.21287 1.02502 0.93654 1.03425 1.20761 0.96464 0.97109 0.96145 0.92358 0.85344 0.90484 0.85914 0.88627 0.74638 0.90740 0.85472 0.88968 0.89637 0.87576 0.88628 0.90161 0.88355 0.87505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.67 16 2 O -0.36 -8.96 9.20 -51.38 -0.47 -9.43 16 3 C 0.49 13.23 4.13 71.24 0.29 13.52 16 4 O -0.50 -15.15 14.61 21.96 0.32 -14.83 16 5 C 0.06 1.73 1.76 44.10 0.08 1.81 16 6 H 0.08 2.45 6.92 -2.39 -0.02 2.43 16 7 C 0.13 2.59 6.69 86.46 0.58 3.17 16 8 N -0.70 -16.16 5.52 -466.10 -2.57 -18.74 16 9 C 0.53 16.44 7.81 87.68 0.69 17.13 16 10 O -0.59 -22.52 17.83 -3.04 -0.05 -22.58 16 11 C 0.04 1.10 5.25 85.42 0.45 1.55 16 12 N -0.50 -14.59 4.64 -884.63 -4.11 -18.70 16 13 C 0.10 3.30 5.11 85.56 0.44 3.74 16 14 C -0.25 -9.77 4.08 -19.67 -0.08 -9.85 16 15 C -0.08 -3.14 8.01 22.22 0.18 -2.96 16 16 C -0.23 -11.01 9.80 22.73 0.22 -10.78 16 17 C 0.08 4.41 5.57 -21.29 -0.12 4.29 16 18 C -0.50 -26.16 9.06 23.46 0.21 -25.95 16 19 H 0.08 3.84 7.90 -2.91 -0.02 3.82 16 20 C 0.04 1.80 5.16 85.26 0.44 2.24 16 21 N -0.82 -42.57 10.94 21.82 0.24 -42.33 16 22 Si 0.98 37.70 29.59 68.60 2.03 39.73 16 23 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 24 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 25 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 26 C -0.19 -9.61 8.69 22.73 0.20 -9.41 16 27 C -0.09 -3.71 7.76 22.22 0.17 -3.54 16 28 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 29 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 1.16 8.13 -2.39 -0.02 1.14 16 31 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.10 1.67 8.11 -2.39 -0.02 1.65 16 33 H 0.42 7.72 8.84 -92.71 -0.82 6.90 16 34 H 0.07 2.73 5.66 -2.39 -0.01 2.72 16 35 H 0.13 3.65 8.14 -2.39 -0.02 3.63 16 36 H 0.09 2.74 8.08 -2.39 -0.02 2.72 16 37 H 0.09 2.82 5.59 -2.39 -0.01 2.81 16 38 H 0.11 3.84 4.80 -2.91 -0.01 3.82 16 39 H 0.10 4.28 8.06 -2.91 -0.02 4.26 16 40 H 0.29 13.52 8.30 -92.70 -0.77 12.75 16 41 H 0.10 5.32 6.17 -2.91 -0.02 5.31 16 42 H 0.11 4.14 7.97 -2.91 -0.02 4.12 16 Total: -1.00 -65.70 340.15 0.57 -65.12 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: 0.25 Total: 35.12 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 4.94 Total: -13.37 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -6.44 Total: -79.76 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -0.21 Total: -46.84 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Total: -65.70 0.57 -65.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447923913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.392 kcal (2) G-P(sol) polarization free energy of solvation -65.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds