Wall clock time and date at job start Fri Apr 10 2020 18:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42894 * 114.00104 * 2 1 4 4 C 1.52995 * 109.47131 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46972 * 64.99970 * 4 3 2 6 6 C 1.36938 * 120.00127 * 270.00310 * 5 4 3 7 7 H 1.07997 * 120.00084 * 145.89198 * 6 5 4 8 8 C 1.38816 * 119.99947 * 325.88315 * 6 5 4 9 9 N 1.31622 * 119.99922 * 336.89227 * 8 6 5 10 10 Si 1.86801 * 119.99852 * 156.88556 * 8 6 5 11 11 H 1.48498 * 109.46854 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46968 * 120.00621 * 10 8 6 13 13 H 1.48497 * 109.47123 * 240.00762 * 10 8 6 14 14 C 1.46507 * 119.99933 * 90.00426 * 5 4 3 15 15 C 1.52992 * 109.47253 * 89.32551 * 14 5 4 16 16 N 1.46503 * 109.46833 * 180.02562 * 15 14 5 17 17 C 1.34520 * 124.45733 * 269.97428 * 16 15 14 18 18 O 1.21446 * 125.71334 * 0.03880 * 17 16 15 19 19 C 1.47821 * 108.58199 * 180.02562 * 17 16 15 20 20 C 1.38565 * 134.29703 * 180.02562 * 19 17 16 21 21 C 1.38609 * 119.71777 * 179.97438 * 20 19 17 22 22 C 1.38231 * 120.45785 * 0.02623 * 21 20 19 23 23 C 1.38603 * 120.46037 * 359.95841 * 22 21 20 24 24 C 1.38570 * 119.72658 * 0.02994 * 23 22 21 25 25 C 1.34523 * 124.46517 * 90.00133 * 16 15 14 26 26 O 1.21446 * 125.70539 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.47074 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46711 * 300.00111 * 1 2 3 29 29 H 1.08998 * 109.46761 * 60.00049 * 1 2 3 30 30 H 1.08997 * 109.46994 * 60.00005 * 3 2 1 31 31 H 1.09003 * 109.47280 * 300.00006 * 3 2 1 32 32 H 1.09003 * 109.47682 * 305.00096 * 4 3 2 33 33 H 1.08995 * 109.47697 * 184.99794 * 4 3 2 34 34 H 0.96997 * 119.99289 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.46734 * 329.32028 * 14 5 4 36 36 H 1.09000 * 109.46530 * 209.32643 * 14 5 4 37 37 H 1.08997 * 109.47327 * 60.00298 * 15 14 5 38 38 H 1.09007 * 109.47102 * 299.99625 * 15 14 5 39 39 H 1.07999 * 120.14070 * 359.68277 * 20 19 17 40 40 H 1.07999 * 119.76997 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.76763 * 179.97438 * 22 21 20 42 42 H 1.08005 * 120.14121 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5638 -1.2509 6 6 4.0977 -0.7976 -1.3345 7 1 3.8765 -1.3034 -2.2627 8 6 4.5049 -1.5276 -0.2262 9 7 5.1951 -0.9426 0.7298 10 14 4.0731 -3.3400 -0.0915 11 1 3.2982 -3.7545 -1.2885 12 1 5.3207 -4.1411 -0.0081 13 1 3.2577 -3.5652 1.1290 14 6 4.2884 1.3997 -2.4130 15 6 5.7645 1.7997 -2.3723 16 7 6.0760 2.6361 -3.5342 17 6 6.5001 2.1638 -4.7202 18 8 6.6820 0.9946 -4.9936 19 6 6.7073 3.3061 -5.6352 20 6 7.1257 3.4289 -6.9505 21 6 7.2138 4.6853 -7.5291 22 6 6.8879 5.8155 -6.8030 23 6 6.4676 5.7080 -5.4866 24 6 6.3744 4.4584 -4.8949 25 6 5.9761 3.9774 -3.5553 26 8 5.6193 4.6763 -2.6284 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8509 0.5684 0.8427 33 1 3.9786 2.1763 0.0902 34 1 5.4793 -1.4527 1.5043 35 1 3.6683 2.2960 -2.3927 36 1 4.0885 0.8403 -3.3269 37 1 6.3845 0.9035 -2.3927 38 1 5.9643 2.3592 -1.4584 39 1 7.3865 2.5497 -7.5209 40 1 7.5402 4.7820 -8.5540 41 1 6.9610 6.7891 -7.2647 42 1 6.2139 6.5944 -4.9241 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453596469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:22 Heat of formation + Delta-G solvation = -30.284840 kcal Electronic energy + Delta-G solvation = -26610.670765 eV Core-core repulsion = 22751.178790 eV Total energy + Delta-G solvation = -3859.491975 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.14923 -38.58706 -38.40232 -37.21728 -35.89028 -35.21925 -32.54204 -31.34660 -31.14989 -29.45141 -27.58561 -25.63467 -25.04701 -24.64114 -23.10697 -22.15626 -22.02748 -20.17095 -19.60536 -17.75665 -17.12493 -16.79481 -16.36245 -16.05753 -15.64005 -15.24165 -15.05774 -14.71674 -14.57811 -14.37053 -14.19881 -14.00193 -13.79491 -13.63749 -13.25226 -12.98090 -12.61138 -12.52090 -12.25007 -11.84747 -11.70946 -11.35837 -10.91756 -10.77532 -10.70790 -10.46951 -10.36411 -10.16453 -10.04715 -9.84070 -9.69168 -9.57231 -9.44680 -9.29973 -8.79507 -8.39949 -6.61972 -5.72061 -3.24292 -0.00799 0.75842 1.98179 2.60233 3.13133 3.42871 3.47999 3.55168 3.59603 3.60516 4.32962 4.41866 4.58222 4.61957 4.72355 4.82052 4.99787 5.14673 5.37475 5.45119 5.52627 5.65138 5.76468 5.77061 5.80680 5.83835 5.92600 5.94543 6.02424 6.10759 6.17061 6.23001 6.32638 6.34539 6.47661 6.59459 6.72113 6.87913 7.05693 7.37986 7.69052 7.86863 7.92004 8.09997 8.56675 9.22077 9.86331 10.38502 11.29930 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.003516 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.559779 B = 7961.684988 C = 8770.629793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.049 3.951 4 C 0.137 3.863 5 N -0.569 5.569 6 C -0.243 4.243 7 H 0.061 0.939 8 C 0.019 3.981 9 N -0.891 5.891 10 Si 0.902 3.098 11 H -0.277 1.277 12 H -0.294 1.294 13 H -0.288 1.288 14 C 0.137 3.863 15 C 0.088 3.912 16 N -0.567 5.567 17 C 0.567 3.433 18 O -0.455 6.455 19 C -0.135 4.135 20 C -0.050 4.050 21 C -0.101 4.101 22 C -0.102 4.102 23 C -0.050 4.050 24 C -0.137 4.137 25 C 0.569 3.431 26 O -0.465 6.465 27 H 0.074 0.926 28 H 0.026 0.974 29 H 0.028 0.972 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.111 0.889 33 H 0.042 0.958 34 H 0.253 0.747 35 H 0.038 0.962 36 H 0.050 0.950 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 14.112 -13.362 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.031 4.031 4 C 0.011 3.989 5 N -0.288 5.288 6 C -0.372 4.372 7 H 0.079 0.921 8 C -0.181 4.181 9 N -0.535 5.535 10 Si 0.732 3.268 11 H -0.202 1.202 12 H -0.222 1.222 13 H -0.215 1.215 14 C 0.009 3.991 15 C -0.033 4.033 16 N -0.309 5.309 17 C 0.354 3.646 18 O -0.326 6.326 19 C -0.138 4.138 20 C -0.069 4.069 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.069 4.069 24 C -0.141 4.141 25 C 0.357 3.643 26 O -0.337 6.337 27 H 0.093 0.907 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.128 0.872 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.499 13.514 -12.748 18.639 hybrid contribution -0.480 -0.620 0.224 0.815 sum 1.020 12.894 -12.524 18.004 Atomic orbital electron populations 1.22633 0.84306 1.01455 0.98388 1.88219 1.16507 1.27653 1.94815 1.23356 0.98678 0.84124 0.96894 1.21155 0.87767 0.96897 0.93114 1.43783 1.74057 1.02728 1.08235 1.18984 1.38823 0.81065 0.98331 0.92090 1.24961 0.96688 0.97874 0.98528 1.69952 1.36335 1.36120 1.11057 0.86253 0.77559 0.85211 0.77803 1.20218 1.22168 1.21485 1.21240 0.90557 0.94309 0.92963 1.23139 1.02158 0.93971 0.84026 1.46977 1.60192 1.08604 1.15118 1.18387 0.76043 0.88076 0.82050 1.90826 1.45835 1.18018 1.77910 1.20785 1.03096 0.94255 0.95713 1.20808 0.95344 0.98530 0.92184 1.21422 0.98283 0.91723 1.00451 1.21414 0.97575 0.99439 0.93573 1.20790 0.95667 0.95870 0.94526 1.20763 1.03245 0.94953 0.95113 1.18380 0.76478 0.82077 0.87339 1.90787 1.42042 1.60174 1.40706 0.90738 0.95538 0.95327 0.95560 0.95546 0.87175 0.94012 0.93688 0.94398 0.93179 0.88189 0.89446 0.84138 0.84334 0.84353 0.84209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -8.03 10.18 -35.23 -0.36 -8.39 16 3 C 0.05 1.02 6.28 37.15 0.23 1.25 16 4 C 0.14 3.24 5.73 -4.04 -0.02 3.22 16 5 N -0.57 -14.17 2.43 -173.24 -0.42 -14.59 16 6 C -0.24 -6.71 8.98 -15.06 -0.14 -6.84 16 7 H 0.06 1.73 7.93 -52.49 -0.42 1.32 16 8 C 0.02 0.53 4.95 -17.43 -0.09 0.45 16 9 N -0.89 -25.58 11.33 55.49 0.63 -24.95 16 10 Si 0.90 22.64 29.61 -169.99 -5.03 17.60 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 14 C 0.14 2.98 5.99 -4.04 -0.02 2.95 16 15 C 0.09 1.79 6.07 -4.04 -0.02 1.77 16 16 N -0.57 -9.95 2.62 -117.62 -0.31 -10.26 16 17 C 0.57 9.49 8.02 -12.46 -0.10 9.39 16 18 O -0.46 -8.90 17.68 5.41 0.10 -8.80 16 19 C -0.13 -1.73 6.41 -104.83 -0.67 -2.41 16 20 C -0.05 -0.47 10.09 -39.32 -0.40 -0.86 16 21 C -0.10 -0.67 10.04 -39.45 -0.40 -1.06 16 22 C -0.10 -0.67 10.03 -39.45 -0.40 -1.06 16 23 C -0.05 -0.45 10.09 -39.32 -0.40 -0.85 16 24 C -0.14 -1.74 6.41 -104.84 -0.67 -2.41 16 25 C 0.57 9.23 8.02 -12.46 -0.10 9.13 16 26 O -0.47 -8.54 17.68 5.41 0.10 -8.45 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.11 2.97 5.33 -51.93 -0.28 2.69 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.04 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.05 1.11 8.03 -51.93 -0.42 0.70 16 37 H 0.10 2.25 7.97 -51.93 -0.41 1.83 16 38 H 0.09 1.82 7.96 -51.92 -0.41 1.41 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 41 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 42 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -32.92 365.58 -7.58 -40.51 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -5.72 Total: -2.47 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: -2.08 Total: 14.28 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.10 Total: -49.80 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.17 Total: -25.64 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.60 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.92 -7.58 -40.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453596469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.223 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds