Wall clock time and date at job start Fri Apr 10 2020 18:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42894 * 114.00104 * 2 1 4 4 C 1.52995 * 109.47131 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46972 * 64.99970 * 4 3 2 6 6 C 1.36938 * 120.00127 * 270.00310 * 5 4 3 7 7 H 1.07997 * 120.00084 * 145.89198 * 6 5 4 8 8 C 1.38816 * 119.99947 * 325.88315 * 6 5 4 9 9 N 1.31622 * 119.99922 * 336.89227 * 8 6 5 10 10 Si 1.86801 * 119.99852 * 156.88556 * 8 6 5 11 11 H 1.48498 * 109.46854 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46968 * 120.00621 * 10 8 6 13 13 H 1.48497 * 109.47123 * 240.00762 * 10 8 6 14 14 C 1.46507 * 119.99933 * 90.00426 * 5 4 3 15 15 C 1.52992 * 109.47253 * 89.32551 * 14 5 4 16 16 N 1.46503 * 109.46833 * 180.02562 * 15 14 5 17 17 C 1.34520 * 124.45733 * 269.97428 * 16 15 14 18 18 O 1.21446 * 125.71334 * 0.03880 * 17 16 15 19 19 C 1.47821 * 108.58199 * 180.02562 * 17 16 15 20 20 C 1.38565 * 134.29703 * 180.02562 * 19 17 16 21 21 C 1.38609 * 119.71777 * 179.97438 * 20 19 17 22 22 C 1.38231 * 120.45785 * 0.02623 * 21 20 19 23 23 C 1.38603 * 120.46037 * 359.95841 * 22 21 20 24 24 C 1.38570 * 119.72658 * 0.02994 * 23 22 21 25 25 C 1.34523 * 124.46517 * 90.00133 * 16 15 14 26 26 O 1.21446 * 125.70539 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.47074 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46711 * 300.00111 * 1 2 3 29 29 H 1.08998 * 109.46761 * 60.00049 * 1 2 3 30 30 H 1.08997 * 109.46994 * 60.00005 * 3 2 1 31 31 H 1.09003 * 109.47280 * 300.00006 * 3 2 1 32 32 H 1.09003 * 109.47682 * 305.00096 * 4 3 2 33 33 H 1.08995 * 109.47697 * 184.99794 * 4 3 2 34 34 H 0.96997 * 119.99289 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.46734 * 329.32028 * 14 5 4 36 36 H 1.09000 * 109.46530 * 209.32643 * 14 5 4 37 37 H 1.08997 * 109.47327 * 60.00298 * 15 14 5 38 38 H 1.09007 * 109.47102 * 299.99625 * 15 14 5 39 39 H 1.07999 * 120.14070 * 359.68277 * 20 19 17 40 40 H 1.07999 * 119.76997 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.76763 * 179.97438 * 22 21 20 42 42 H 1.08005 * 120.14121 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5638 -1.2509 6 6 4.0977 -0.7976 -1.3345 7 1 3.8765 -1.3034 -2.2627 8 6 4.5049 -1.5276 -0.2262 9 7 5.1951 -0.9426 0.7298 10 14 4.0731 -3.3400 -0.0915 11 1 3.2982 -3.7545 -1.2885 12 1 5.3207 -4.1411 -0.0081 13 1 3.2577 -3.5652 1.1290 14 6 4.2884 1.3997 -2.4130 15 6 5.7645 1.7997 -2.3723 16 7 6.0760 2.6361 -3.5342 17 6 6.5001 2.1638 -4.7202 18 8 6.6820 0.9946 -4.9936 19 6 6.7073 3.3061 -5.6352 20 6 7.1257 3.4289 -6.9505 21 6 7.2138 4.6853 -7.5291 22 6 6.8879 5.8155 -6.8030 23 6 6.4676 5.7080 -5.4866 24 6 6.3744 4.4584 -4.8949 25 6 5.9761 3.9774 -3.5553 26 8 5.6193 4.6763 -2.6284 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8509 0.5684 0.8427 33 1 3.9786 2.1763 0.0902 34 1 5.4793 -1.4527 1.5043 35 1 3.6683 2.2960 -2.3927 36 1 4.0885 0.8403 -3.3269 37 1 6.3845 0.9035 -2.3927 38 1 5.9643 2.3592 -1.4584 39 1 7.3865 2.5497 -7.5209 40 1 7.5402 4.7820 -8.5540 41 1 6.9610 6.7891 -7.2647 42 1 6.2139 6.5944 -4.9241 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453596469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:21 Heat of formation + Delta-G solvation = -51.490152 kcal Electronic energy + Delta-G solvation = -26611.590296 eV Core-core repulsion = 22751.178790 eV Total energy + Delta-G solvation = -3860.411506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.34860 -39.76102 -39.49499 -38.90329 -37.51880 -36.77731 -34.07619 -32.87183 -32.08148 -30.98531 -29.25783 -27.17316 -26.24284 -26.17022 -24.65742 -23.41788 -23.15426 -21.91975 -20.86561 -18.89382 -18.68618 -18.33424 -17.78947 -17.25782 -17.14030 -16.70529 -16.46512 -16.40742 -15.74406 -15.67946 -15.46606 -15.37459 -15.17857 -15.00775 -14.97605 -14.34074 -14.16123 -13.64716 -13.45967 -13.20296 -13.16300 -12.79361 -12.68179 -12.61840 -12.40467 -12.26988 -12.04609 -11.82801 -11.59004 -11.55512 -11.38925 -11.04517 -10.51316 -10.37665 -10.18015 -10.15884 -8.66707 -7.83374 -5.39334 -0.99255 0.03552 1.00716 1.27886 1.44796 1.48432 1.57828 1.85401 2.53631 2.62755 2.66062 3.16070 3.23026 3.30734 3.57981 3.64168 3.90263 4.10283 4.22454 4.23413 4.25561 4.36234 4.39321 4.43445 4.50582 4.52237 4.59287 4.67060 4.73153 4.79338 4.83961 4.88674 4.90238 5.01939 5.07252 5.25926 5.30581 5.66040 5.66746 5.75288 5.75435 6.12708 6.38834 6.54838 6.62199 7.14592 7.80640 8.30304 9.15220 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.003516 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.559779 B = 7961.684988 C = 8770.629793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.057 3.943 4 C 0.136 3.864 5 N -0.582 5.582 6 C -0.247 4.247 7 H 0.046 0.954 8 C -0.021 4.021 9 N -0.914 5.914 10 Si 0.953 3.047 11 H -0.275 1.275 12 H -0.292 1.292 13 H -0.289 1.289 14 C 0.147 3.853 15 C 0.107 3.893 16 N -0.578 5.578 17 C 0.562 3.438 18 O -0.499 6.499 19 C -0.157 4.157 20 C -0.046 4.046 21 C -0.080 4.080 22 C -0.080 4.080 23 C -0.043 4.043 24 C -0.157 4.157 25 C 0.567 3.433 26 O -0.496 6.496 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.035 0.965 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.251 0.749 35 H 0.051 0.949 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.153 0.847 40 H 0.184 0.816 41 H 0.186 0.814 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.244 16.828 -16.284 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C -0.022 4.022 4 C 0.010 3.990 5 N -0.302 5.302 6 C -0.377 4.377 7 H 0.064 0.936 8 C -0.218 4.218 9 N -0.559 5.559 10 Si 0.782 3.218 11 H -0.200 1.200 12 H -0.220 1.220 13 H -0.215 1.215 14 C 0.019 3.981 15 C -0.016 4.016 16 N -0.320 5.320 17 C 0.353 3.647 18 O -0.373 6.373 19 C -0.161 4.161 20 C -0.065 4.065 21 C -0.098 4.098 22 C -0.098 4.098 23 C -0.062 4.062 24 C -0.160 4.160 25 C 0.358 3.642 26 O -0.370 6.370 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.170 0.830 40 H 0.202 0.798 41 H 0.203 0.797 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.289 16.267 -15.699 22.643 hybrid contribution -0.403 -1.310 0.972 1.680 sum 0.887 14.957 -14.727 21.009 Atomic orbital electron populations 1.22837 0.81536 1.02718 1.00061 1.88139 1.19660 1.28514 1.95178 1.23163 0.96499 0.84113 0.98425 1.21085 0.90046 0.96366 0.91456 1.43876 1.74835 1.02333 1.09188 1.18990 1.38353 0.82562 0.97842 0.93649 1.25499 0.96977 1.00890 0.98480 1.70061 1.37348 1.37095 1.11387 0.85454 0.77167 0.81675 0.77511 1.19969 1.21969 1.21539 1.21124 0.91469 0.94060 0.91407 1.22479 1.00636 0.93268 0.85180 1.46919 1.60858 1.09385 1.14795 1.19092 0.74588 0.88704 0.82270 1.90784 1.47970 1.19973 1.78596 1.20509 1.06782 0.91779 0.97017 1.21179 0.94042 1.00732 0.90542 1.21970 0.95621 0.90037 1.02135 1.21981 0.94338 1.01548 0.91891 1.21190 0.94475 0.94685 0.95830 1.20514 1.06232 0.96550 0.92737 1.18977 0.75334 0.81138 0.88723 1.90753 1.43673 1.60447 1.42176 0.89807 0.93340 0.94020 0.93005 0.94723 0.90270 0.93206 0.93974 0.93115 0.94339 0.91169 0.90385 0.82978 0.79848 0.79724 0.82558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -17.91 10.18 -148.98 -1.52 -19.42 16 3 C 0.06 2.37 6.28 71.98 0.45 2.82 16 4 C 0.14 6.65 5.73 86.38 0.49 7.14 16 5 N -0.58 -30.26 2.43 -702.00 -1.71 -31.96 16 6 C -0.25 -14.25 8.98 84.03 0.75 -13.50 16 7 H 0.05 2.71 7.93 -2.91 -0.02 2.69 16 8 C -0.02 -1.23 4.95 84.86 0.42 -0.81 16 9 N -0.91 -54.48 11.33 21.65 0.25 -54.23 16 10 Si 0.95 47.77 29.61 68.60 2.03 49.80 16 11 H -0.27 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 13 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 14 C 0.15 6.72 5.99 86.38 0.52 7.23 16 15 C 0.11 4.70 6.07 86.38 0.52 5.22 16 16 N -0.58 -21.60 2.62 -762.97 -2.00 -23.60 16 17 C 0.56 19.90 8.02 86.82 0.70 20.60 16 18 O -0.50 -20.90 17.68 -3.54 -0.06 -20.96 16 19 C -0.16 -3.95 6.41 -20.00 -0.13 -4.08 16 20 C -0.05 -0.73 10.09 22.44 0.23 -0.50 16 21 C -0.08 -0.59 10.04 22.36 0.22 -0.37 16 22 C -0.08 -0.56 10.03 22.36 0.22 -0.34 16 23 C -0.04 -0.63 10.09 22.44 0.23 -0.41 16 24 C -0.16 -3.81 6.41 -20.00 -0.13 -3.94 16 25 C 0.57 19.00 8.02 86.81 0.70 19.70 16 26 O -0.50 -18.80 17.68 -3.55 -0.06 -18.86 16 27 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 4.44 5.33 -2.39 -0.01 4.43 16 33 H 0.05 2.27 8.07 -2.39 -0.02 2.25 16 34 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 35 H 0.05 2.16 8.08 -2.39 -0.02 2.14 16 36 H 0.04 1.82 8.03 -2.39 -0.02 1.80 16 37 H 0.07 3.46 7.97 -2.39 -0.02 3.44 16 38 H 0.08 3.51 7.96 -2.38 -0.02 3.49 16 39 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 40 H 0.18 -0.13 8.06 -2.91 -0.02 -0.15 16 41 H 0.19 -0.25 8.06 -2.91 -0.02 -0.27 16 42 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -77.50 365.58 4.40 -73.10 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.03 Total: 5.31 kcal Atomic # 6 Polarization: 34.39 SS G_CDS: 6.45 Total: 40.84 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -3.46 Total: -109.80 kcal Atomic # 8 Polarization: -57.61 SS G_CDS: -1.64 Total: -59.25 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -77.50 4.40 -73.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453596469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.608 kcal (2) G-P(sol) polarization free energy of solvation -77.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds