Wall clock time and date at job start Fri Apr 10 2020 18:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42098 * 110.54566 * 2 1 4 4 O 1.42105 * 110.54180 * 223.24987 * 2 1 3 5 5 N 1.65603 * 104.45170 * 111.62595 * 2 1 3 6 6 C 1.46506 * 119.99656 * 64.99800 * 5 2 1 7 7 H 1.09000 * 109.47212 * 25.00143 * 6 5 2 8 8 C 1.53005 * 109.46831 * 264.99975 * 6 5 2 9 9 C 1.53002 * 109.47197 * 300.00003 * 8 6 5 10 10 C 1.52993 * 109.47066 * 300.00152 * 9 8 6 11 11 C 1.53000 * 109.47165 * 60.00395 * 10 9 8 12 12 C 1.53001 * 109.46886 * 299.99212 * 11 10 9 13 13 H 1.08992 * 109.47514 * 300.00434 * 12 11 10 14 14 N 1.46500 * 109.47299 * 180.02562 * 12 11 10 15 15 C 1.34775 * 120.00198 * 85.00079 * 14 12 11 16 16 O 1.21284 * 119.99780 * 0.02562 * 15 14 12 17 17 C 1.50693 * 120.00470 * 180.02562 * 15 14 12 18 18 C 1.52999 * 109.47365 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.47346 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99888 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00082 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00044 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99830 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47033 * 60.00366 * 23 21 19 25 25 H 1.48507 * 109.46821 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47516 * 300.00063 * 23 21 19 27 27 H 1.09007 * 109.46756 * 308.37231 * 1 2 3 28 28 H 1.09000 * 109.47050 * 68.37340 * 1 2 3 29 29 H 1.08999 * 109.47208 * 188.37543 * 1 2 3 30 30 H 0.97001 * 120.00115 * 245.00025 * 5 2 1 31 31 H 1.09001 * 109.46812 * 60.00445 * 8 6 5 32 32 H 1.09002 * 109.46935 * 180.02562 * 8 6 5 33 33 H 1.08996 * 109.46698 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.46838 * 60.00684 * 9 8 6 35 35 H 1.09002 * 109.47726 * 299.99988 * 10 9 8 36 36 H 1.09000 * 109.46925 * 180.02562 * 10 9 8 37 37 H 1.09001 * 109.47194 * 179.97438 * 11 10 9 38 38 H 1.08992 * 109.47399 * 59.99717 * 11 10 9 39 39 H 0.97002 * 119.99914 * 265.01076 * 14 12 11 40 40 H 1.09000 * 109.47068 * 300.00090 * 17 15 14 41 41 H 1.08995 * 109.47624 * 60.00185 * 17 15 14 42 42 H 1.09000 * 109.46920 * 299.99959 * 18 17 15 43 43 H 1.09006 * 109.47048 * 59.99857 * 18 17 15 44 44 H 0.97003 * 119.99883 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5910 1.4907 6 6 1.8907 -1.9707 1.8507 7 1 1.7966 -2.5699 0.9450 8 6 0.5653 -1.9896 2.6149 9 6 0.6975 -1.1486 3.8862 10 6 1.8036 -1.7295 4.7692 11 6 3.1290 -1.7105 4.0051 12 6 2.9969 -2.5516 2.7339 13 1 2.7465 -3.5780 3.0017 14 7 4.2661 -2.5340 2.0025 15 6 5.2413 -3.4071 2.3238 16 8 5.0678 -4.2077 3.2182 17 6 6.5471 -3.3886 1.5719 18 6 7.4722 -4.4721 2.1297 19 6 8.7778 -4.4540 1.3774 20 1 8.9322 -3.7413 0.5807 21 6 9.7753 -5.3473 1.7061 22 7 9.5872 -6.2155 2.6759 23 14 11.3934 -5.3254 0.7730 24 1 12.0367 -3.9960 0.9288 25 1 12.2914 -6.3769 1.3146 26 1 11.1384 -5.5862 -0.6665 27 1 -0.3633 0.6380 0.8058 28 1 -0.3633 0.3788 -0.9553 29 1 -0.3633 -1.0167 0.1497 30 1 2.6921 -0.0237 2.1256 31 1 -0.2227 -1.5757 1.9857 32 1 0.3152 -3.0160 2.8831 33 1 -0.2466 -1.1624 4.4307 34 1 0.9478 -0.1220 3.6183 35 1 1.5533 -2.7560 5.0371 36 1 1.8975 -1.1306 5.6751 37 1 3.9172 -2.1240 4.6344 38 1 3.3794 -0.6841 3.7373 39 1 4.4047 -1.8938 1.2870 40 1 6.3605 -3.5795 0.5151 41 1 7.0190 -2.4129 1.6871 42 1 7.6588 -4.2816 3.1866 43 1 7.0001 -5.4478 2.0142 44 1 10.2889 -6.8442 2.9069 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487148915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:45 Heat of formation + Delta-G solvation = -131.941312 kcal Electronic energy + Delta-G solvation = -25671.580365 eV Core-core repulsion = 21943.124186 eV Total energy + Delta-G solvation = -3728.456179 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.21335 -38.34683 -37.38876 -36.25647 -34.04422 -33.84336 -33.38128 -31.08890 -30.36984 -29.69335 -28.79961 -25.58909 -23.05197 -22.82134 -21.24835 -20.55347 -19.52348 -19.27232 -18.19399 -17.01911 -16.62374 -16.55325 -16.05097 -15.62213 -15.40308 -15.04095 -14.75576 -14.46628 -14.35785 -13.84811 -13.64387 -13.38671 -13.24173 -13.05977 -12.83216 -12.59225 -12.40025 -12.28474 -12.17198 -12.12527 -11.81391 -11.47494 -11.43464 -11.17233 -11.08401 -10.88116 -10.83153 -10.58224 -10.51962 -9.89875 -9.86669 -9.61584 -9.13051 -8.95435 -8.75203 -8.27331 -5.91895 -3.95865 -0.09496 2.32998 3.28713 3.38339 3.42166 3.43689 3.45209 3.50761 3.81170 4.19924 4.32183 4.41450 4.50167 4.52501 4.58826 4.74767 4.89312 4.93593 5.11568 5.17029 5.19520 5.25624 5.40576 5.43015 5.49103 5.64437 5.71831 5.74348 5.89750 5.94010 6.13555 6.19127 6.30021 6.33101 6.60838 6.79020 6.95936 7.78885 7.91344 7.93760 8.11690 8.43891 8.82533 9.12594 9.67425 11.19040 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.003124 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.437401 B = 8960.973709 C =10138.303363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.676 4.676 2 S 2.610 3.390 3 O -0.958 6.958 4 O -0.950 6.950 5 N -1.113 6.113 6 C 0.140 3.860 7 H 0.101 0.899 8 C -0.141 4.141 9 C -0.119 4.119 10 C -0.118 4.118 11 C -0.131 4.131 12 C 0.146 3.854 13 H 0.099 0.901 14 N -0.739 5.739 15 C 0.512 3.488 16 O -0.535 6.535 17 C -0.133 4.133 18 C 0.039 3.961 19 C -0.527 4.527 20 H 0.055 0.945 21 C 0.058 3.942 22 N -0.891 5.891 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.419 0.581 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.399 0.601 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.234 14.419 -0.908 29.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.826 4.826 2 S 2.701 3.299 3 O -0.949 6.949 4 O -0.940 6.940 5 N -0.874 5.874 6 C 0.032 3.968 7 H 0.119 0.881 8 C -0.180 4.180 9 C -0.156 4.156 10 C -0.156 4.156 11 C -0.170 4.170 12 C 0.039 3.961 13 H 0.117 0.883 14 N -0.392 5.392 15 C 0.301 3.699 16 O -0.410 6.410 17 C -0.173 4.173 18 C 0.001 3.999 19 C -0.565 4.565 20 H 0.074 0.926 21 C -0.144 4.144 22 N -0.530 5.530 23 Si 0.721 3.279 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.202 1.202 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.256 0.744 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.233 0.767 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.041 0.959 43 H 0.042 0.958 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.751 13.812 -0.977 28.361 hybrid contribution 0.429 0.454 -0.226 0.664 sum -24.322 14.267 -1.203 28.223 Atomic orbital electron populations 1.30658 1.28749 1.11633 1.11520 1.04887 0.77573 0.73992 0.73441 1.93634 1.77837 1.37687 1.85720 1.93662 1.76694 1.61627 1.61986 1.55742 1.73828 1.21290 1.36491 1.21192 0.94609 0.81621 0.99369 0.88066 1.22161 0.96142 1.02108 0.97620 1.21512 0.98997 0.99500 0.95609 1.21514 0.94270 1.01710 0.98117 1.21937 0.98241 1.00108 0.96735 1.20986 0.83433 1.00704 0.90933 0.88330 1.46241 1.15078 1.38859 1.39068 1.21554 0.85795 0.78966 0.83574 1.90658 1.81016 1.38209 1.31140 1.21886 0.91786 1.03658 0.99923 1.18881 0.92060 0.92431 0.96515 1.21211 0.99390 1.17721 1.18201 0.92647 1.25018 0.98662 0.95480 0.95211 1.69989 1.33678 1.20009 1.29282 0.86651 0.83518 0.77616 0.80128 1.20263 1.21329 1.20239 0.85206 0.85435 0.85228 0.74383 0.91256 0.89930 0.91750 0.91678 0.91467 0.91663 0.90576 0.91905 0.76701 0.90136 0.90288 0.95887 0.95846 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -2.31 10.04 101.05 1.01 -1.30 16 2 S 2.61 19.12 6.08 -107.50 -0.65 18.47 16 3 O -0.96 -10.43 18.08 -57.54 -1.04 -11.47 16 4 O -0.95 -10.80 17.39 -57.54 -1.00 -11.80 16 5 N -1.11 -7.36 4.06 -4.88 -0.02 -7.38 16 6 C 0.14 1.03 2.62 -67.92 -0.18 0.85 16 7 H 0.10 0.75 7.48 -51.93 -0.39 0.37 16 8 C -0.14 -0.71 5.60 -26.73 -0.15 -0.86 16 9 C -0.12 -0.63 5.77 -26.73 -0.15 -0.79 16 10 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 11 C -0.13 -1.31 5.31 -26.73 -0.14 -1.45 16 12 C 0.15 1.60 2.22 -67.93 -0.15 1.45 16 13 H 0.10 1.24 7.57 -51.93 -0.39 0.85 16 14 N -0.74 -10.26 5.04 -53.81 -0.27 -10.53 16 15 C 0.51 9.82 7.79 -10.99 -0.09 9.73 16 16 O -0.53 -12.25 15.64 5.55 0.09 -12.17 16 17 C -0.13 -2.78 5.64 -27.89 -0.16 -2.94 16 18 C 0.04 1.06 4.26 -27.88 -0.12 0.94 16 19 C -0.53 -15.26 9.11 -34.44 -0.31 -15.57 16 20 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -27.78 13.29 55.43 0.74 -27.04 16 23 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 28 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.13 0.29 6.77 -51.92 -0.35 -0.06 16 30 H 0.42 2.54 6.78 -34.47 -0.23 2.30 16 31 H 0.07 0.21 5.78 -51.93 -0.30 -0.09 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.31 7.45 -51.93 -0.39 -0.08 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.54 6.50 -51.93 -0.34 0.21 16 39 H 0.40 4.91 8.14 -40.82 -0.33 4.58 16 40 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 43 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 362.18 15.07 5.46 5.46 Total: -1.00 -39.05 362.18 -9.33 -48.38 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.91 Total: 0.41 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -0.69 Total: -9.37 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.45 Total: -44.95 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -1.95 Total: -35.44 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 19.12 SS G_CDS: -0.65 Total: 18.47 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -39.05 -9.33 -48.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487148915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.566 kcal (2) G-P(sol) polarization free energy of solvation -39.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds