Wall clock time and date at job start Fri Apr 10 2020 18:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42098 * 110.54566 * 2 1 4 4 O 1.42105 * 110.54180 * 223.24987 * 2 1 3 5 5 N 1.65603 * 104.45170 * 111.62595 * 2 1 3 6 6 C 1.46506 * 119.99656 * 64.99800 * 5 2 1 7 7 H 1.09000 * 109.47212 * 25.00143 * 6 5 2 8 8 C 1.53005 * 109.46831 * 264.99975 * 6 5 2 9 9 C 1.53002 * 109.47197 * 300.00003 * 8 6 5 10 10 C 1.52993 * 109.47066 * 300.00152 * 9 8 6 11 11 C 1.53000 * 109.47165 * 60.00395 * 10 9 8 12 12 C 1.53001 * 109.46886 * 299.99212 * 11 10 9 13 13 H 1.08992 * 109.47514 * 300.00434 * 12 11 10 14 14 N 1.46500 * 109.47299 * 180.02562 * 12 11 10 15 15 C 1.34775 * 120.00198 * 85.00079 * 14 12 11 16 16 O 1.21284 * 119.99780 * 0.02562 * 15 14 12 17 17 C 1.50693 * 120.00470 * 180.02562 * 15 14 12 18 18 C 1.52999 * 109.47365 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.47346 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99888 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00082 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00044 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99830 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47033 * 60.00366 * 23 21 19 25 25 H 1.48507 * 109.46821 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47516 * 300.00063 * 23 21 19 27 27 H 1.09007 * 109.46756 * 308.37231 * 1 2 3 28 28 H 1.09000 * 109.47050 * 68.37340 * 1 2 3 29 29 H 1.08999 * 109.47208 * 188.37543 * 1 2 3 30 30 H 0.97001 * 120.00115 * 245.00025 * 5 2 1 31 31 H 1.09001 * 109.46812 * 60.00445 * 8 6 5 32 32 H 1.09002 * 109.46935 * 180.02562 * 8 6 5 33 33 H 1.08996 * 109.46698 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.46838 * 60.00684 * 9 8 6 35 35 H 1.09002 * 109.47726 * 299.99988 * 10 9 8 36 36 H 1.09000 * 109.46925 * 180.02562 * 10 9 8 37 37 H 1.09001 * 109.47194 * 179.97438 * 11 10 9 38 38 H 1.08992 * 109.47399 * 59.99717 * 11 10 9 39 39 H 0.97002 * 119.99914 * 265.01076 * 14 12 11 40 40 H 1.09000 * 109.47068 * 300.00090 * 17 15 14 41 41 H 1.08995 * 109.47624 * 60.00185 * 17 15 14 42 42 H 1.09000 * 109.46920 * 299.99959 * 18 17 15 43 43 H 1.09006 * 109.47048 * 59.99857 * 18 17 15 44 44 H 0.97003 * 119.99883 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5910 1.4907 6 6 1.8907 -1.9707 1.8507 7 1 1.7966 -2.5699 0.9450 8 6 0.5653 -1.9896 2.6149 9 6 0.6975 -1.1486 3.8862 10 6 1.8036 -1.7295 4.7692 11 6 3.1290 -1.7105 4.0051 12 6 2.9969 -2.5516 2.7339 13 1 2.7465 -3.5780 3.0017 14 7 4.2661 -2.5340 2.0025 15 6 5.2413 -3.4071 2.3238 16 8 5.0678 -4.2077 3.2182 17 6 6.5471 -3.3886 1.5719 18 6 7.4722 -4.4721 2.1297 19 6 8.7778 -4.4540 1.3774 20 1 8.9322 -3.7413 0.5807 21 6 9.7753 -5.3473 1.7061 22 7 9.5872 -6.2155 2.6759 23 14 11.3934 -5.3254 0.7730 24 1 12.0367 -3.9960 0.9288 25 1 12.2914 -6.3769 1.3146 26 1 11.1384 -5.5862 -0.6665 27 1 -0.3633 0.6380 0.8058 28 1 -0.3633 0.3788 -0.9553 29 1 -0.3633 -1.0167 0.1497 30 1 2.6921 -0.0237 2.1256 31 1 -0.2227 -1.5757 1.9857 32 1 0.3152 -3.0160 2.8831 33 1 -0.2466 -1.1624 4.4307 34 1 0.9478 -0.1220 3.6183 35 1 1.5533 -2.7560 5.0371 36 1 1.8975 -1.1306 5.6751 37 1 3.9172 -2.1240 4.6344 38 1 3.3794 -0.6841 3.7373 39 1 4.4047 -1.8938 1.2870 40 1 6.3605 -3.5795 0.5151 41 1 7.0190 -2.4129 1.6871 42 1 7.6588 -4.2816 3.1866 43 1 7.0001 -5.4478 2.0142 44 1 10.2889 -6.8442 2.9069 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487148915.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:44 Heat of formation + Delta-G solvation = -163.972203 kcal Electronic energy + Delta-G solvation = -25672.969329 eV Core-core repulsion = 21943.124186 eV Total energy + Delta-G solvation = -3729.845143 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.26059 -39.57090 -38.08447 -36.95191 -35.60164 -35.11798 -34.52220 -33.03230 -31.04646 -30.08673 -29.75933 -27.53445 -24.27041 -23.58868 -22.70069 -21.38407 -20.88599 -19.86684 -18.94405 -18.70029 -17.68603 -17.39366 -17.11619 -16.83444 -16.45667 -16.44677 -15.92360 -15.70624 -15.22476 -14.75980 -14.42046 -14.34545 -14.10616 -13.91087 -13.76539 -13.67291 -13.56801 -13.23604 -13.19689 -13.10375 -12.99148 -12.79258 -12.53704 -12.46159 -12.21820 -11.98989 -11.92679 -11.73479 -11.64907 -11.42027 -11.32947 -11.19600 -10.74486 -10.56805 -10.35364 -9.99107 -8.18723 -6.32839 -0.61655 1.40932 1.45726 1.53428 1.71204 1.78608 2.25165 2.44444 2.95380 3.13785 3.31753 3.52141 3.79040 3.97991 4.04744 4.09050 4.12555 4.22015 4.27254 4.38597 4.43843 4.50322 4.52363 4.56481 4.63889 4.82632 4.94579 5.02304 5.04210 5.14654 5.22910 5.23449 5.34130 5.41748 5.47096 5.55183 5.62178 5.62560 5.84379 6.09030 6.17531 6.58677 6.84814 7.34265 7.37502 8.93677 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.003124 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.437401 B = 8960.973709 C =10138.303363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 2.613 3.387 3 O -0.999 6.999 4 O -0.999 6.999 5 N -1.111 6.111 6 C 0.148 3.852 7 H 0.103 0.897 8 C -0.138 4.138 9 C -0.115 4.115 10 C -0.115 4.115 11 C -0.128 4.128 12 C 0.138 3.862 13 H 0.079 0.921 14 N -0.717 5.717 15 C 0.514 3.486 16 O -0.582 6.582 17 C -0.126 4.126 18 C 0.046 3.954 19 C -0.547 4.547 20 H 0.072 0.928 21 C -0.005 4.005 22 N -0.936 5.936 23 Si 0.974 3.026 24 H -0.263 1.263 25 H -0.285 1.285 26 H -0.263 1.263 27 H 0.156 0.844 28 H 0.143 0.857 29 H 0.151 0.849 30 H 0.422 0.578 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.078 0.922 39 H 0.409 0.591 40 H 0.098 0.902 41 H 0.099 0.901 42 H -0.016 1.016 43 H -0.016 1.016 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.442 16.547 -2.338 32.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.710 3.290 3 O -0.990 6.990 4 O -0.989 6.989 5 N -0.871 5.871 6 C 0.040 3.960 7 H 0.121 0.879 8 C -0.177 4.177 9 C -0.152 4.152 10 C -0.154 4.154 11 C -0.167 4.167 12 C 0.032 3.968 13 H 0.097 0.903 14 N -0.370 5.370 15 C 0.302 3.698 16 O -0.461 6.461 17 C -0.165 4.165 18 C 0.009 3.991 19 C -0.585 4.585 20 H 0.090 0.910 21 C -0.203 4.203 22 N -0.576 5.576 23 Si 0.798 3.202 24 H -0.188 1.188 25 H -0.211 1.211 26 H -0.188 1.188 27 H 0.175 0.825 28 H 0.161 0.839 29 H 0.169 0.831 30 H 0.260 0.740 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.245 0.755 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.002 0.998 43 H 0.002 0.998 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -26.951 15.995 -2.434 31.435 hybrid contribution 1.012 -0.196 0.257 1.062 sum -25.939 15.799 -2.176 30.450 Atomic orbital electron populations 1.30441 1.22642 1.13901 1.13689 1.04502 0.79592 0.72321 0.72578 1.93581 1.80089 1.39252 1.86071 1.93602 1.79245 1.62549 1.63528 1.55566 1.74596 1.20893 1.36084 1.21135 0.94263 0.81662 0.98954 0.87904 1.22213 0.95127 1.02681 0.97718 1.21524 0.98585 0.99904 0.95233 1.21507 0.93607 1.01651 0.98590 1.21880 0.98783 1.00220 0.95782 1.21262 0.82912 1.00457 0.92122 0.90330 1.46021 1.15086 1.37117 1.38740 1.21180 0.86287 0.79423 0.82901 1.90642 1.81863 1.40467 1.33172 1.21670 0.91986 1.02269 1.00612 1.18646 0.93256 0.92648 0.94597 1.21691 1.00011 1.18152 1.18650 0.90972 1.26124 1.03255 0.94804 0.96109 1.70167 1.35251 1.20974 1.31207 0.85374 0.77872 0.78161 0.78830 1.18768 1.21051 1.18811 0.82529 0.83858 0.83088 0.74034 0.87831 0.89753 0.89936 0.90368 0.92410 0.91137 0.94662 0.90378 0.75452 0.88394 0.88249 0.99791 0.99800 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.30 10.04 113.37 1.14 -0.17 16 2 S 2.61 32.98 6.08 -56.49 -0.34 32.64 16 3 O -1.00 -20.53 18.08 -127.65 -2.31 -22.84 16 4 O -1.00 -21.78 17.39 -127.65 -2.22 -24.00 16 5 N -1.11 -12.33 4.06 -169.37 -0.69 -13.02 16 6 C 0.15 1.89 2.62 44.99 0.12 2.01 16 7 H 0.10 1.34 7.48 -2.39 -0.02 1.32 16 8 C -0.14 -0.91 5.60 30.60 0.17 -0.74 16 9 C -0.12 -0.83 5.77 30.59 0.18 -0.65 16 10 C -0.12 -1.60 5.92 30.59 0.18 -1.42 16 11 C -0.13 -2.58 5.31 30.59 0.16 -2.41 16 12 C 0.14 3.04 2.22 44.99 0.10 3.14 16 13 H 0.08 2.09 7.57 -2.39 -0.02 2.07 16 14 N -0.72 -20.28 5.04 -442.54 -2.23 -22.51 16 15 C 0.51 20.63 7.79 87.66 0.68 21.31 16 16 O -0.58 -28.62 15.64 -3.04 -0.05 -28.67 16 17 C -0.13 -5.41 5.64 29.85 0.17 -5.24 16 18 C 0.05 2.67 4.26 29.85 0.13 2.79 16 19 C -0.55 -32.34 9.11 25.60 0.23 -32.11 16 20 H 0.07 3.93 7.74 -2.91 -0.02 3.90 16 21 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 22 N -0.94 -60.47 13.29 21.45 0.28 -60.19 16 23 Si 0.97 45.55 29.54 68.60 2.03 47.57 16 24 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 25 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 26 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 27 H 0.16 -0.36 8.14 -2.39 -0.02 -0.38 16 28 H 0.14 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.15 -0.21 6.77 -2.39 -0.02 -0.23 16 30 H 0.42 4.29 6.78 -96.74 -0.66 3.64 16 31 H 0.10 0.03 5.78 -2.39 -0.01 0.02 16 32 H 0.08 0.59 8.14 -2.39 -0.02 0.58 16 33 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.08 0.40 7.45 -2.39 -0.02 0.38 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 1.30 6.50 -2.39 -0.02 1.28 16 39 H 0.41 9.94 8.14 -92.71 -0.75 9.19 16 40 H 0.10 3.86 8.14 -2.39 -0.02 3.84 16 41 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 42 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 43 H -0.02 -1.06 8.10 -2.38 -0.02 -1.08 16 44 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -90.89 362.18 -2.20 -93.09 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -0.40 Total: 11.26 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 3.72 Total: -13.34 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -2.63 Total: -95.72 kcal Atomic # 8 Polarization: -70.93 SS G_CDS: -4.58 Total: -75.50 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 32.98 SS G_CDS: -0.34 Total: 32.64 kcal Total: -90.89 -2.20 -93.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487148915.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.884 kcal (2) G-P(sol) polarization free energy of solvation -90.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds