Wall clock time and date at job start Fri Apr 10 2020 18:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42102 * 110.54515 * 2 1 4 4 O 1.42100 * 110.54232 * 223.24211 * 2 1 3 5 5 N 1.65602 * 104.44835 * 111.62118 * 2 1 3 6 6 C 1.47588 * 134.49255 * 89.99979 * 5 2 1 7 7 C 1.53939 * 86.11490 * 155.35943 * 6 5 2 8 8 C 1.53006 * 113.74007 * 137.95564 * 7 6 5 9 9 N 1.46504 * 109.46883 * 174.99955 * 8 7 6 10 10 C 1.34775 * 119.99531 * 179.97438 * 9 8 7 11 11 O 1.21279 * 120.00300 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 8 13 13 C 1.53006 * 109.47126 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.46947 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46946 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00275 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99908 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99919 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99992 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47123 * 90.00328 * 20 18 16 22 22 H 1.48501 * 109.47275 * 210.00393 * 20 18 16 23 23 H 1.48509 * 109.47046 * 330.00079 * 20 18 16 24 24 C 1.47580 * 134.49272 * 269.99615 * 5 2 1 25 25 H 1.09007 * 109.46828 * 308.37992 * 1 2 3 26 26 H 1.08997 * 109.46574 * 68.37456 * 1 2 3 27 27 H 1.08995 * 109.47185 * 188.38068 * 1 2 3 28 28 H 1.09003 * 113.76693 * 41.05530 * 6 5 2 29 29 H 1.08998 * 113.76396 * 269.66254 * 6 5 2 30 30 H 1.09005 * 113.74232 * 269.15116 * 7 6 5 31 31 H 1.09001 * 109.47002 * 294.99452 * 8 7 6 32 32 H 1.08993 * 109.46955 * 54.99889 * 8 7 6 33 33 H 0.96992 * 119.99966 * 359.97438 * 9 8 7 34 34 H 1.08998 * 109.47224 * 299.99707 * 12 10 9 35 35 H 1.08993 * 109.47046 * 60.00641 * 12 10 9 36 36 H 1.09001 * 109.46998 * 300.00313 * 13 12 10 37 37 H 1.08996 * 109.46884 * 59.99429 * 13 12 10 38 38 H 1.09001 * 109.46832 * 299.99679 * 14 13 12 39 39 H 1.08996 * 109.46952 * 59.99698 * 14 13 12 40 40 H 1.08992 * 109.47549 * 300.00253 * 15 14 13 41 41 H 1.09004 * 109.47108 * 59.99946 * 15 14 13 42 42 H 0.96997 * 120.00191 * 179.97438 * 19 18 16 43 43 H 1.09012 * 113.76784 * 90.34263 * 24 5 2 44 44 H 1.08992 * 113.77167 * 318.94818 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3128 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9116 5 7 2.2273 -0.5909 1.4908 6 6 2.4853 -1.9387 2.0340 7 6 3.3356 -1.2304 3.1041 8 6 3.1412 -1.7896 4.5149 9 7 4.0756 -1.1339 5.4332 10 6 4.0845 -1.4691 6.7385 11 8 3.3193 -2.3139 7.1529 12 6 5.0460 -0.7950 7.6831 13 6 4.8515 -1.3541 9.0939 14 6 5.8273 -0.6693 10.0530 15 6 5.6323 -1.2280 11.4639 16 6 6.5938 -0.5539 12.4084 17 1 7.2755 0.1981 12.0393 18 6 6.6033 -0.8972 13.7438 19 7 7.4420 -0.3086 14.5681 20 14 5.4238 -2.1974 14.3822 21 1 6.0634 -3.5344 14.2896 22 1 5.0867 -1.9071 15.7990 23 1 4.1834 -2.1843 13.5656 24 6 2.4854 0.0187 2.8098 25 1 -0.3633 0.6381 0.8057 26 1 -0.3632 0.3787 -0.9553 27 1 -0.3633 -1.0166 0.1498 28 1 3.0627 -2.5782 1.3664 29 1 1.5972 -2.4292 2.4324 30 1 4.3853 -1.1233 2.8304 31 1 2.1185 -1.6023 4.8422 32 1 3.3302 -2.8630 4.5095 33 1 4.6878 -0.4585 5.1017 34 1 6.0686 -0.9830 7.3560 35 1 4.8577 0.2785 7.6882 36 1 3.8289 -1.1665 9.4213 37 1 5.0399 -2.4277 9.0884 38 1 6.8500 -0.8566 9.7257 39 1 5.6383 0.4041 10.0583 40 1 4.6096 -1.0405 11.7908 41 1 5.8209 -2.3016 11.4588 42 1 7.4485 -0.5498 15.5075 43 1 1.5972 0.1032 3.4362 44 1 3.0627 0.9419 2.7617 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588164748.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:13 Heat of formation + Delta-G solvation = -92.010538 kcal Electronic energy + Delta-G solvation = -23487.676459 eV Core-core repulsion = 19760.951809 eV Total energy + Delta-G solvation = -3726.724651 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.35682 -39.35064 -37.60808 -36.46858 -35.23659 -34.72096 -32.58892 -30.81789 -30.10842 -29.63662 -26.87516 -26.47338 -24.91811 -22.03188 -21.21672 -20.07804 -20.02122 -19.31989 -18.19210 -17.26239 -16.81236 -16.68569 -16.58554 -16.36048 -15.93353 -15.33890 -14.81439 -14.38236 -14.17896 -14.13003 -13.79874 -13.76831 -13.63588 -13.34465 -13.12325 -12.64631 -12.63518 -12.55388 -12.38769 -12.13707 -12.09603 -11.74996 -11.69169 -11.47011 -11.27517 -11.10756 -10.73715 -10.53768 -10.00446 -9.82428 -9.71973 -9.64516 -9.41651 -9.28008 -9.11458 -8.49106 -6.00219 -3.97651 -0.34838 1.93847 2.63963 2.95082 3.32153 3.35350 3.42133 3.42389 3.48146 3.80657 3.90777 4.22090 4.23397 4.24055 4.50242 4.61166 4.81542 4.82087 4.89948 5.01334 5.04957 5.16763 5.22697 5.25483 5.29668 5.34784 5.38030 5.63673 5.79019 5.80256 6.03242 6.15224 6.21012 6.41738 6.68573 6.82540 6.99565 7.32853 7.38685 7.51393 7.85205 8.16967 8.58715 9.04894 9.63157 11.13280 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.043280 B = 0.001623 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.795525 B =17249.954149 C =17489.573327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.677 4.677 2 S 2.629 3.371 3 O -0.951 6.951 4 O -0.952 6.952 5 N -1.038 6.038 6 C 0.133 3.867 7 C -0.130 4.130 8 C 0.126 3.874 9 N -0.739 5.739 10 C 0.513 3.487 11 O -0.537 6.537 12 C -0.139 4.139 13 C -0.106 4.106 14 C -0.103 4.103 15 C -0.016 4.016 16 C -0.520 4.520 17 H 0.071 0.929 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.265 1.265 24 C 0.127 3.873 25 H 0.127 0.873 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.402 0.598 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.088 0.912 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.481 -0.430 -32.495 35.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.827 4.827 2 S 2.723 3.277 3 O -0.942 6.942 4 O -0.943 6.943 5 N -0.877 5.877 6 C 0.007 3.993 7 C -0.151 4.151 8 C 0.001 3.999 9 N -0.392 5.392 10 C 0.300 3.700 11 O -0.413 6.413 12 C -0.179 4.179 13 C -0.144 4.144 14 C -0.141 4.141 15 C -0.053 4.053 16 C -0.558 4.558 17 H 0.089 0.911 18 C -0.136 4.136 19 N -0.545 5.545 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.189 1.189 24 C 0.001 3.999 25 H 0.145 0.855 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.130 0.870 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.236 0.764 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.107 0.893 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.485 -0.683 -32.919 35.971 hybrid contribution -1.084 -0.384 0.469 1.242 sum -15.569 -1.067 -32.450 36.007 Atomic orbital electron populations 1.30632 1.29180 1.11463 1.11375 1.04405 0.77238 0.73837 0.72190 1.93619 1.77630 1.37537 1.85398 1.93614 1.77656 1.61945 1.61064 1.60325 1.84814 1.18029 1.24501 1.22766 0.98534 0.84589 0.93368 1.23467 1.01099 0.96404 0.94150 1.21308 0.94122 0.97765 0.86673 1.46076 1.40671 1.43874 1.08618 1.21087 0.84247 0.82420 0.82219 1.90706 1.41083 1.32679 1.76863 1.21779 0.98840 1.01351 0.95960 1.21481 1.00945 1.00553 0.91444 1.21479 0.97484 0.99245 0.95858 1.19577 0.97134 0.96069 0.92522 1.21193 1.19390 1.22695 0.92503 0.91106 1.25046 0.95399 0.96212 0.96973 1.69917 1.37328 1.43006 1.04258 0.86771 0.82345 0.82234 0.77915 1.20329 1.21475 1.18912 1.22958 0.98607 0.97670 0.80627 0.85471 0.85497 0.85491 0.88958 0.89260 0.86989 0.91019 0.90826 0.76419 0.88949 0.88945 0.91837 0.91824 0.92854 0.92835 0.96633 0.97067 0.92827 0.89346 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -1.72 10.99 101.05 1.11 -0.61 16 2 S 2.63 15.37 6.57 -107.50 -0.71 14.67 16 3 O -0.95 -9.09 18.02 -57.54 -1.04 -10.13 16 4 O -0.95 -8.95 18.02 -57.54 -1.04 -9.98 16 5 N -1.04 -4.78 3.99 -118.76 -0.47 -5.26 16 6 C 0.13 0.46 8.48 -2.97 -0.03 0.43 16 7 C -0.13 -0.48 3.94 -89.70 -0.35 -0.83 16 8 C 0.13 0.74 5.53 -4.04 -0.02 0.71 16 9 N -0.74 -5.38 5.56 -60.29 -0.33 -5.72 16 10 C 0.51 6.00 7.83 -10.98 -0.09 5.91 16 11 O -0.54 -8.62 15.98 5.56 0.09 -8.54 16 12 C -0.14 -1.60 5.70 -27.88 -0.16 -1.76 16 13 C -0.11 -1.71 4.50 -26.73 -0.12 -1.83 16 14 C -0.10 -1.98 5.15 -26.73 -0.14 -2.12 16 15 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 16 C -0.52 -15.03 9.66 -34.44 -0.33 -15.37 16 17 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.91 -28.27 13.96 55.43 0.77 -27.50 16 20 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 24 C 0.13 0.48 8.47 -2.98 -0.03 0.45 16 25 H 0.13 0.20 8.14 -51.92 -0.42 -0.22 16 26 H 0.13 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.13 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.16 8.10 -51.93 -0.42 -0.27 16 30 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.45 7.84 -51.93 -0.41 0.04 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.40 1.84 8.47 -40.82 -0.35 1.50 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 37 H 0.06 1.09 8.10 -51.93 -0.42 0.66 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 41 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 42 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 43 H 0.09 0.22 7.89 -51.92 -0.41 -0.19 16 44 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 379.23 15.07 5.71 5.71 Total: -1.00 -40.10 379.23 -9.47 -49.57 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -7.43 Total: -6.70 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -0.36 Total: -13.69 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: -0.04 Total: -38.47 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -1.99 Total: -28.65 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Atomic # 16 Polarization: 15.37 SS G_CDS: -0.71 Total: 14.67 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -40.10 -9.47 -49.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164748.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.438 kcal (2) G-P(sol) polarization free energy of solvation -40.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds