Wall clock time and date at job start Fri Apr 10 2020 18:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42102 * 110.54515 * 2 1 4 4 O 1.42100 * 110.54232 * 223.24211 * 2 1 3 5 5 N 1.65602 * 104.44835 * 111.62118 * 2 1 3 6 6 C 1.47588 * 134.49255 * 89.99979 * 5 2 1 7 7 C 1.53939 * 86.11490 * 155.35943 * 6 5 2 8 8 C 1.53006 * 113.74007 * 137.95564 * 7 6 5 9 9 N 1.46504 * 109.46883 * 174.99955 * 8 7 6 10 10 C 1.34775 * 119.99531 * 179.97438 * 9 8 7 11 11 O 1.21279 * 120.00300 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 8 13 13 C 1.53006 * 109.47126 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.46947 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46946 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00275 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99908 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99919 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99992 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47123 * 90.00328 * 20 18 16 22 22 H 1.48501 * 109.47275 * 210.00393 * 20 18 16 23 23 H 1.48509 * 109.47046 * 330.00079 * 20 18 16 24 24 C 1.47580 * 134.49272 * 269.99615 * 5 2 1 25 25 H 1.09007 * 109.46828 * 308.37992 * 1 2 3 26 26 H 1.08997 * 109.46574 * 68.37456 * 1 2 3 27 27 H 1.08995 * 109.47185 * 188.38068 * 1 2 3 28 28 H 1.09003 * 113.76693 * 41.05530 * 6 5 2 29 29 H 1.08998 * 113.76396 * 269.66254 * 6 5 2 30 30 H 1.09005 * 113.74232 * 269.15116 * 7 6 5 31 31 H 1.09001 * 109.47002 * 294.99452 * 8 7 6 32 32 H 1.08993 * 109.46955 * 54.99889 * 8 7 6 33 33 H 0.96992 * 119.99966 * 359.97438 * 9 8 7 34 34 H 1.08998 * 109.47224 * 299.99707 * 12 10 9 35 35 H 1.08993 * 109.47046 * 60.00641 * 12 10 9 36 36 H 1.09001 * 109.46998 * 300.00313 * 13 12 10 37 37 H 1.08996 * 109.46884 * 59.99429 * 13 12 10 38 38 H 1.09001 * 109.46832 * 299.99679 * 14 13 12 39 39 H 1.08996 * 109.46952 * 59.99698 * 14 13 12 40 40 H 1.08992 * 109.47549 * 300.00253 * 15 14 13 41 41 H 1.09004 * 109.47108 * 59.99946 * 15 14 13 42 42 H 0.96997 * 120.00191 * 179.97438 * 19 18 16 43 43 H 1.09012 * 113.76784 * 90.34263 * 24 5 2 44 44 H 1.08992 * 113.77167 * 318.94818 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3128 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9116 5 7 2.2273 -0.5909 1.4908 6 6 2.4853 -1.9387 2.0340 7 6 3.3356 -1.2304 3.1041 8 6 3.1412 -1.7896 4.5149 9 7 4.0756 -1.1339 5.4332 10 6 4.0845 -1.4691 6.7385 11 8 3.3193 -2.3139 7.1529 12 6 5.0460 -0.7950 7.6831 13 6 4.8515 -1.3541 9.0939 14 6 5.8273 -0.6693 10.0530 15 6 5.6323 -1.2280 11.4639 16 6 6.5938 -0.5539 12.4084 17 1 7.2755 0.1981 12.0393 18 6 6.6033 -0.8972 13.7438 19 7 7.4420 -0.3086 14.5681 20 14 5.4238 -2.1974 14.3822 21 1 6.0634 -3.5344 14.2896 22 1 5.0867 -1.9071 15.7990 23 1 4.1834 -2.1843 13.5656 24 6 2.4854 0.0187 2.8098 25 1 -0.3633 0.6381 0.8057 26 1 -0.3632 0.3787 -0.9553 27 1 -0.3633 -1.0166 0.1498 28 1 3.0627 -2.5782 1.3664 29 1 1.5972 -2.4292 2.4324 30 1 4.3853 -1.1233 2.8304 31 1 2.1185 -1.6023 4.8422 32 1 3.3302 -2.8630 4.5095 33 1 4.6878 -0.4585 5.1017 34 1 6.0686 -0.9830 7.3560 35 1 4.8577 0.2785 7.6882 36 1 3.8289 -1.1665 9.4213 37 1 5.0399 -2.4277 9.0884 38 1 6.8500 -0.8566 9.7257 39 1 5.6383 0.4041 10.0583 40 1 4.6096 -1.0405 11.7908 41 1 5.8209 -2.3016 11.4588 42 1 7.4485 -0.5498 15.5075 43 1 1.5972 0.1032 3.4362 44 1 3.0627 0.9419 2.7617 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588164748.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:12 Heat of formation + Delta-G solvation = -124.218381 kcal Electronic energy + Delta-G solvation = -23489.073096 eV Core-core repulsion = 19760.951809 eV Total energy + Delta-G solvation = -3728.121287 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.93249 -40.00707 -38.18163 -37.04454 -36.68382 -35.57148 -34.56826 -32.06404 -30.72033 -30.21889 -27.78649 -27.13700 -25.84076 -23.54371 -21.75114 -21.64969 -20.84665 -19.72073 -18.83468 -18.60460 -17.86065 -17.37532 -17.17788 -17.03952 -16.84403 -16.31087 -16.01185 -15.56230 -15.11810 -14.80894 -14.59498 -14.44131 -14.19283 -14.00004 -13.96264 -13.66263 -13.59759 -13.43951 -13.39798 -13.23650 -13.15208 -12.82223 -12.54931 -12.29221 -12.15819 -12.02084 -11.86451 -11.73343 -11.64431 -11.47242 -11.30658 -11.23482 -10.74429 -10.70381 -10.01102 -9.97284 -8.28086 -6.31151 -0.74841 1.36349 1.37766 1.50631 1.57386 1.75990 2.29553 2.37500 2.93976 3.02012 3.07394 3.47950 3.59117 3.88502 3.97717 4.05174 4.06632 4.11227 4.21464 4.29698 4.60232 4.61819 4.67457 4.69429 4.72989 4.79676 4.82888 4.88697 4.90206 4.93241 4.99144 5.20213 5.23878 5.29165 5.34143 5.49090 5.59229 5.65287 5.69348 5.71371 6.31454 6.65865 6.77103 7.33696 7.38036 8.88483 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.043280 B = 0.001623 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.795525 B =17249.954149 C =17489.573327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.635 3.365 3 O -0.996 6.996 4 O -0.996 6.996 5 N -1.044 6.044 6 C 0.131 3.869 7 C -0.120 4.120 8 C 0.128 3.872 9 N -0.719 5.719 10 C 0.513 3.487 11 O -0.587 6.587 12 C -0.134 4.134 13 C -0.098 4.098 14 C -0.095 4.095 15 C -0.017 4.017 16 C -0.531 4.531 17 H 0.036 0.964 18 C 0.003 3.997 19 N -0.951 5.951 20 Si 0.948 3.052 21 H -0.267 1.267 22 H -0.282 1.282 23 H -0.251 1.251 24 C 0.124 3.876 25 H 0.144 0.856 26 H 0.139 0.861 27 H 0.145 0.855 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.417 0.583 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.014 0.986 41 H 0.013 0.987 42 H 0.266 0.734 43 H 0.105 0.895 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.433 -1.045 -33.732 37.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.810 4.810 2 S 2.735 3.265 3 O -0.987 6.987 4 O -0.987 6.987 5 N -0.883 5.883 6 C 0.006 3.994 7 C -0.141 4.141 8 C 0.003 3.997 9 N -0.373 5.373 10 C 0.301 3.699 11 O -0.467 6.467 12 C -0.173 4.173 13 C -0.136 4.136 14 C -0.133 4.133 15 C -0.055 4.055 16 C -0.569 4.569 17 H 0.055 0.945 18 C -0.194 4.194 19 N -0.592 5.592 20 Si 0.772 3.228 21 H -0.193 1.193 22 H -0.208 1.208 23 H -0.175 1.175 24 C -0.001 4.001 25 H 0.162 0.838 26 H 0.157 0.843 27 H 0.164 0.836 28 H 0.107 0.893 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.254 0.746 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.074 0.926 43 H 0.123 0.877 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.379 -1.268 -34.214 37.954 hybrid contribution -0.463 -0.130 0.825 0.955 sum -16.842 -1.398 -33.389 37.423 Atomic orbital electron populations 1.30433 1.24437 1.13274 1.12888 1.03859 0.78719 0.72196 0.71754 1.93557 1.79665 1.39464 1.86031 1.93554 1.79659 1.62703 1.62749 1.60115 1.85323 1.18670 1.24215 1.22937 0.99376 0.84159 0.92935 1.23365 1.01477 0.96469 0.92812 1.21370 0.93693 0.97378 0.87224 1.45920 1.40523 1.43397 1.07412 1.21038 0.83633 0.81806 0.83425 1.90693 1.43122 1.34977 1.77938 1.21681 1.00134 1.02354 0.93150 1.21275 0.99076 0.99641 0.93581 1.21350 0.98669 0.99476 0.93775 1.19583 0.95548 0.95839 0.94519 1.21572 1.19586 1.22110 0.93667 0.94541 1.26009 0.97314 0.98709 0.97339 1.70061 1.39364 1.44959 1.04802 0.85683 0.80314 0.79299 0.77512 1.19252 1.20795 1.17471 1.23110 0.99312 0.97409 0.80241 0.83779 0.84252 0.83624 0.89255 0.87152 0.86619 0.90985 0.91512 0.74576 0.86816 0.86649 0.92993 0.93039 0.92560 0.92497 0.96742 0.96911 0.92554 0.87670 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.51 10.99 113.37 1.25 -0.26 16 2 S 2.64 28.80 6.57 -56.49 -0.37 28.43 16 3 O -1.00 -19.04 18.02 -127.65 -2.30 -21.34 16 4 O -1.00 -18.73 18.02 -127.65 -2.30 -21.03 16 5 N -1.04 -7.99 3.99 -529.65 -2.12 -10.10 16 6 C 0.13 0.66 8.48 86.48 0.73 1.39 16 7 C -0.12 -0.64 3.94 -10.14 -0.04 -0.68 16 8 C 0.13 1.22 5.53 86.38 0.48 1.70 16 9 N -0.72 -8.72 5.56 -463.05 -2.57 -11.29 16 10 C 0.51 10.99 7.83 87.66 0.69 11.68 16 11 O -0.59 -18.25 15.98 -3.03 -0.05 -18.30 16 12 C -0.13 -2.74 5.70 29.85 0.17 -2.57 16 13 C -0.10 -3.01 4.50 30.60 0.14 -2.87 16 14 C -0.10 -3.57 5.15 30.59 0.16 -3.41 16 15 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 16 C -0.53 -31.18 9.66 25.60 0.25 -30.93 16 17 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 18 C 0.00 0.17 5.47 84.66 0.46 0.63 16 19 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 20 Si 0.95 45.62 27.47 68.60 1.88 47.50 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 24 C 0.12 0.67 8.47 86.48 0.73 1.40 16 25 H 0.14 -0.05 8.14 -2.39 -0.02 -0.07 16 26 H 0.14 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.15 -0.11 8.14 -2.39 -0.02 -0.13 16 28 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.11 0.09 8.10 -2.39 -0.02 0.07 16 30 H 0.12 0.55 8.14 -2.38 -0.02 0.54 16 31 H 0.07 0.74 7.84 -2.39 -0.02 0.72 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 33 H 0.42 2.56 8.47 -92.71 -0.79 1.78 16 34 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 37 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 38 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 40 H 0.01 0.69 7.20 -2.39 -0.02 0.67 16 41 H 0.01 0.60 7.57 -2.38 -0.02 0.58 16 42 H 0.27 15.73 8.31 -92.71 -0.77 14.95 16 43 H 0.11 0.23 7.89 -2.38 -0.02 0.21 16 44 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -88.93 379.23 -2.25 -91.18 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: 0.14 Total: -0.30 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 5.13 Total: -24.64 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -4.39 Total: -81.50 kcal Atomic # 8 Polarization: -56.02 SS G_CDS: -4.65 Total: -60.67 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.88 Total: 47.50 kcal Atomic # 16 Polarization: 28.80 SS G_CDS: -0.37 Total: 28.43 kcal Total: -88.93 -2.25 -91.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164748.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.039 kcal (2) G-P(sol) polarization free energy of solvation -88.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds