Wall clock time and date at job start Fri Apr 10 2020 18:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42105 * 110.54275 * 2 1 4 4 O 1.42101 * 110.54298 * 223.25103 * 2 1 3 5 5 N 1.65599 * 104.44825 * 111.62486 * 2 1 3 6 6 C 1.47425 * 125.64709 * 269.69089 * 5 2 1 7 7 C 1.55127 * 104.71873 * 155.82255 * 6 5 2 8 8 C 1.55155 * 101.49081 * 37.29326 * 7 6 5 9 9 H 1.09000 * 110.72114 * 82.69342 * 8 7 6 10 10 N 1.46499 * 110.87385 * 205.89831 * 8 7 6 11 11 C 1.34772 * 120.00128 * 268.61035 * 10 8 7 12 12 O 1.21280 * 120.00313 * 0.02562 * 11 10 8 13 13 C 1.50701 * 120.00010 * 180.02562 * 11 10 8 14 14 C 1.52996 * 109.47382 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47366 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47157 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47172 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99839 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99884 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00028 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00377 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47210 * 89.99379 * 21 19 17 23 23 H 1.48498 * 109.47293 * 209.99872 * 21 19 17 24 24 H 1.48508 * 109.46951 * 329.99571 * 21 19 17 25 25 C 1.47023 * 125.64529 * 90.00207 * 5 2 1 26 26 H 1.09003 * 109.47352 * 68.37645 * 1 2 3 27 27 H 1.09004 * 109.47032 * 188.37317 * 1 2 3 28 28 H 1.09000 * 109.47124 * 308.37589 * 1 2 3 29 29 H 1.09003 * 110.36753 * 274.74498 * 6 5 2 30 30 H 1.08997 * 110.36765 * 37.07511 * 6 5 2 31 31 H 1.09004 * 111.19132 * 279.19204 * 7 6 5 32 32 H 1.08998 * 110.91003 * 155.27792 * 7 6 5 33 33 H 0.97008 * 119.99774 * 88.61037 * 10 8 7 34 34 H 1.09000 * 109.47077 * 299.99874 * 13 11 10 35 35 H 1.09000 * 109.47345 * 59.99812 * 13 11 10 36 36 H 1.09000 * 109.47066 * 300.00070 * 14 13 11 37 37 H 1.09000 * 109.46880 * 59.99716 * 14 13 11 38 38 H 1.09000 * 109.47112 * 300.00075 * 15 14 13 39 39 H 1.08993 * 109.46964 * 60.00028 * 15 14 13 40 40 H 1.09006 * 109.47191 * 299.99807 * 16 15 14 41 41 H 1.09000 * 109.47403 * 59.99557 * 16 15 14 42 42 H 0.96996 * 120.00320 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.88515 * 300.43533 * 25 5 2 44 44 H 1.08998 * 109.88571 * 61.60600 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5910 1.4908 6 6 2.4478 0.2167 2.7042 7 6 2.1851 -0.7597 3.8807 8 6 2.7809 -2.0803 3.3253 9 1 3.8601 -2.1097 3.4757 10 7 2.1412 -3.2431 3.9457 11 6 2.6681 -3.7873 5.0604 12 8 3.6716 -3.3141 5.5503 13 6 2.0103 -4.9838 5.6981 14 6 2.8027 -5.4005 6.9388 15 6 2.1345 -6.6149 7.5866 16 6 2.9266 -7.0312 8.8277 17 6 2.2688 -8.2278 9.4654 18 1 1.3750 -8.6488 9.0294 19 6 2.8082 -8.7848 10.6055 20 7 2.2339 -9.8287 11.1624 21 14 4.3538 -8.0560 11.3601 22 1 3.9780 -7.0121 12.3471 23 1 5.1245 -9.1270 12.0414 24 1 5.1878 -7.4495 10.2914 25 6 2.4410 -2.0074 1.8217 26 1 -0.3634 0.3787 -0.9553 27 1 -0.3633 -1.0168 0.1497 28 1 -0.3633 0.6380 0.8056 29 1 3.4738 0.5834 2.7345 30 1 1.7452 1.0493 2.7387 31 1 1.1176 -0.8642 4.0752 32 1 2.7145 -0.4391 4.7779 33 1 1.3383 -3.6213 3.5540 34 1 0.9910 -4.7272 5.9868 35 1 1.9895 -5.8093 4.9866 36 1 3.8218 -5.6573 6.6497 37 1 2.8239 -4.5752 7.6505 38 1 1.1155 -6.3578 7.8758 39 1 2.1130 -7.4403 6.8751 40 1 3.9458 -7.2883 8.5389 41 1 2.9479 -6.2056 9.5390 42 1 2.6130 -10.2204 11.9646 43 1 1.5338 -2.5766 1.6188 44 1 3.2692 -2.4044 1.2348 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593275724.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:21 Heat of formation + Delta-G solvation = -120.101449 kcal Electronic energy + Delta-G solvation = -24046.183735 eV Core-core repulsion = 20318.240971 eV Total energy + Delta-G solvation = -3727.942764 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.25147 -38.57712 -37.65039 -36.47822 -35.11776 -34.43022 -32.60349 -30.90176 -30.15592 -30.02744 -28.88760 -25.89531 -23.15169 -22.54391 -21.34156 -20.48384 -20.04654 -19.49309 -18.30102 -17.41122 -16.98474 -16.62678 -16.36734 -16.34317 -15.76140 -15.24811 -14.51357 -14.27137 -14.23861 -14.03027 -13.86462 -13.79707 -13.57727 -13.47735 -12.73757 -12.66717 -12.65033 -12.56402 -12.41063 -12.10762 -12.04674 -11.92206 -11.76881 -11.61663 -11.39314 -11.13139 -10.76094 -10.56030 -10.04987 -9.84385 -9.66703 -9.64799 -9.45128 -9.33486 -9.13105 -8.50279 -6.01467 -3.99026 -0.36236 1.99652 2.55571 2.90423 3.31492 3.34519 3.41735 3.47494 3.49305 3.83174 4.12711 4.17869 4.39868 4.49174 4.57525 4.65781 4.74319 4.78274 4.90786 5.05051 5.17803 5.20722 5.25225 5.33414 5.36091 5.40988 5.52043 5.61091 5.73487 5.77916 5.99991 6.11687 6.17577 6.38782 6.65846 6.79913 6.97251 7.25174 7.36725 7.49513 7.83789 8.10307 8.57186 9.03419 9.61868 11.11971 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.042151 B = 0.001824 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.115134 B =15351.195972 C =15629.680816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.673 4.673 2 S 2.628 3.372 3 O -0.950 6.950 4 O -0.951 6.951 5 N -1.014 6.014 6 C 0.123 3.877 7 C -0.144 4.144 8 C 0.136 3.864 9 H 0.108 0.892 10 N -0.731 5.731 11 C 0.516 3.484 12 O -0.533 6.533 13 C -0.139 4.139 14 C -0.106 4.106 15 C -0.103 4.103 16 C -0.016 4.016 17 C -0.520 4.520 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.264 1.264 25 C 0.116 3.884 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.401 0.599 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.016 0.984 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.071 0.929 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.773 22.446 -24.282 33.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.823 4.823 2 S 2.722 3.278 3 O -0.941 6.941 4 O -0.941 6.941 5 N -0.852 5.852 6 C -0.002 4.002 7 C -0.184 4.184 8 C 0.029 3.971 9 H 0.126 0.874 10 N -0.385 5.385 11 C 0.303 3.697 12 O -0.408 6.408 13 C -0.179 4.179 14 C -0.144 4.144 15 C -0.140 4.140 16 C -0.053 4.053 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.137 4.137 20 N -0.545 5.545 21 Si 0.708 3.292 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 C -0.010 4.010 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.236 0.764 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.443 22.956 -24.534 33.892 hybrid contribution -0.453 -0.032 0.585 0.741 sum -4.897 22.924 -23.949 33.512 Atomic orbital electron populations 1.30576 1.28530 1.11685 1.11517 1.04463 0.77596 0.73864 0.71903 1.93626 1.77615 1.37534 1.85301 1.93624 1.77576 1.61805 1.61104 1.58625 1.84728 1.14935 1.26914 1.22053 1.02271 0.93490 0.82433 1.23292 1.02356 0.94602 0.98183 1.21913 0.99565 0.85413 0.90236 0.87401 1.46053 1.31106 1.32251 1.29064 1.21119 0.84286 0.84737 0.79522 1.90713 1.25066 1.62857 1.62138 1.21784 1.01150 0.95260 0.99675 1.21486 0.99143 0.99272 0.94542 1.21475 0.99198 0.95116 0.98237 1.19579 0.95956 0.96532 0.93243 1.21178 1.12384 1.12164 1.10023 0.91123 1.25052 0.97132 0.94716 0.96773 1.69920 1.40602 1.22842 1.21139 0.86767 0.83937 0.78876 0.79667 1.20329 1.21463 1.18902 1.21893 1.02053 0.81178 0.95914 0.85300 0.85318 0.85334 0.90444 0.90283 0.90093 0.89114 0.76411 0.88929 0.88864 0.91756 0.91801 0.92887 0.92825 0.96613 0.97066 0.92816 0.91071 0.89761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -1.52 10.99 101.05 1.11 -0.41 16 2 S 2.63 15.66 6.29 -107.50 -0.68 14.98 16 3 O -0.95 -8.93 17.60 -57.54 -1.01 -9.94 16 4 O -0.95 -9.03 17.60 -57.54 -1.01 -10.05 16 5 N -1.01 -5.58 3.62 -111.29 -0.40 -5.98 16 6 C 0.12 0.64 6.90 -2.41 -0.02 0.62 16 7 C -0.14 -0.83 6.79 -24.47 -0.17 -1.00 16 8 C 0.14 0.94 3.31 -66.10 -0.22 0.72 16 9 H 0.11 0.97 7.55 -51.93 -0.39 0.57 16 10 N -0.73 -5.32 5.18 -52.03 -0.27 -5.59 16 11 C 0.52 5.88 7.83 -10.99 -0.09 5.79 16 12 O -0.53 -8.35 15.63 5.56 0.09 -8.27 16 13 C -0.14 -1.54 5.70 -27.88 -0.16 -1.70 16 14 C -0.11 -1.68 4.50 -26.73 -0.12 -1.81 16 15 C -0.10 -1.95 5.15 -26.73 -0.14 -2.09 16 16 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 17 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 18 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 19 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 20 N -0.91 -28.18 13.96 55.43 0.77 -27.41 16 21 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 25 C 0.12 0.63 6.64 -3.06 -0.02 0.61 16 26 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 27 H 0.13 0.14 8.14 -51.92 -0.42 -0.28 16 28 H 0.13 0.14 8.14 -51.92 -0.42 -0.28 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.40 1.70 8.37 -40.82 -0.34 1.36 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 37 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 41 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.07 0.22 7.72 -51.93 -0.40 -0.18 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -39.01 373.69 -9.31 -48.32 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -7.40 Total: -5.99 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -0.36 Total: -13.23 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.10 Total: -38.97 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -1.94 Total: -28.26 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Atomic # 16 Polarization: 15.66 SS G_CDS: -0.68 Total: 14.98 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.01 -9.31 -48.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593275724.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.778 kcal (2) G-P(sol) polarization free energy of solvation -39.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds