Wall clock time and date at job start Fri Apr 10 2020 18:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42105 * 110.54275 * 2 1 4 4 O 1.42101 * 110.54298 * 223.25103 * 2 1 3 5 5 N 1.65599 * 104.44825 * 111.62486 * 2 1 3 6 6 C 1.47425 * 125.64709 * 269.69089 * 5 2 1 7 7 C 1.55127 * 104.71873 * 155.82255 * 6 5 2 8 8 C 1.55155 * 101.49081 * 37.29326 * 7 6 5 9 9 H 1.09000 * 110.72114 * 82.69342 * 8 7 6 10 10 N 1.46499 * 110.87385 * 205.89831 * 8 7 6 11 11 C 1.34772 * 120.00128 * 268.61035 * 10 8 7 12 12 O 1.21280 * 120.00313 * 0.02562 * 11 10 8 13 13 C 1.50701 * 120.00010 * 180.02562 * 11 10 8 14 14 C 1.52996 * 109.47382 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47366 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47157 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47172 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99839 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99884 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00028 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00377 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47210 * 89.99379 * 21 19 17 23 23 H 1.48498 * 109.47293 * 209.99872 * 21 19 17 24 24 H 1.48508 * 109.46951 * 329.99571 * 21 19 17 25 25 C 1.47023 * 125.64529 * 90.00207 * 5 2 1 26 26 H 1.09003 * 109.47352 * 68.37645 * 1 2 3 27 27 H 1.09004 * 109.47032 * 188.37317 * 1 2 3 28 28 H 1.09000 * 109.47124 * 308.37589 * 1 2 3 29 29 H 1.09003 * 110.36753 * 274.74498 * 6 5 2 30 30 H 1.08997 * 110.36765 * 37.07511 * 6 5 2 31 31 H 1.09004 * 111.19132 * 279.19204 * 7 6 5 32 32 H 1.08998 * 110.91003 * 155.27792 * 7 6 5 33 33 H 0.97008 * 119.99774 * 88.61037 * 10 8 7 34 34 H 1.09000 * 109.47077 * 299.99874 * 13 11 10 35 35 H 1.09000 * 109.47345 * 59.99812 * 13 11 10 36 36 H 1.09000 * 109.47066 * 300.00070 * 14 13 11 37 37 H 1.09000 * 109.46880 * 59.99716 * 14 13 11 38 38 H 1.09000 * 109.47112 * 300.00075 * 15 14 13 39 39 H 1.08993 * 109.46964 * 60.00028 * 15 14 13 40 40 H 1.09006 * 109.47191 * 299.99807 * 16 15 14 41 41 H 1.09000 * 109.47403 * 59.99557 * 16 15 14 42 42 H 0.96996 * 120.00320 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.88515 * 300.43533 * 25 5 2 44 44 H 1.08998 * 109.88571 * 61.60600 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5910 1.4908 6 6 2.4478 0.2167 2.7042 7 6 2.1851 -0.7597 3.8807 8 6 2.7809 -2.0803 3.3253 9 1 3.8601 -2.1097 3.4757 10 7 2.1412 -3.2431 3.9457 11 6 2.6681 -3.7873 5.0604 12 8 3.6716 -3.3141 5.5503 13 6 2.0103 -4.9838 5.6981 14 6 2.8027 -5.4005 6.9388 15 6 2.1345 -6.6149 7.5866 16 6 2.9266 -7.0312 8.8277 17 6 2.2688 -8.2278 9.4654 18 1 1.3750 -8.6488 9.0294 19 6 2.8082 -8.7848 10.6055 20 7 2.2339 -9.8287 11.1624 21 14 4.3538 -8.0560 11.3601 22 1 3.9780 -7.0121 12.3471 23 1 5.1245 -9.1270 12.0414 24 1 5.1878 -7.4495 10.2914 25 6 2.4410 -2.0074 1.8217 26 1 -0.3634 0.3787 -0.9553 27 1 -0.3633 -1.0168 0.1497 28 1 -0.3633 0.6380 0.8056 29 1 3.4738 0.5834 2.7345 30 1 1.7452 1.0493 2.7387 31 1 1.1176 -0.8642 4.0752 32 1 2.7145 -0.4391 4.7779 33 1 1.3383 -3.6213 3.5540 34 1 0.9910 -4.7272 5.9868 35 1 1.9895 -5.8093 4.9866 36 1 3.8218 -5.6573 6.6497 37 1 2.8239 -4.5752 7.6505 38 1 1.1155 -6.3578 7.8758 39 1 2.1130 -7.4403 6.8751 40 1 3.9458 -7.2883 8.5389 41 1 2.9479 -6.2056 9.5390 42 1 2.6130 -10.2204 11.9646 43 1 1.5338 -2.5766 1.6188 44 1 3.2692 -2.4044 1.2348 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593275724.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:20 Heat of formation + Delta-G solvation = -151.276595 kcal Electronic energy + Delta-G solvation = -24047.535590 eV Core-core repulsion = 20318.240971 eV Total energy + Delta-G solvation = -3729.294620 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.01043 -39.21968 -38.22434 -37.05344 -36.64633 -35.17390 -34.57378 -32.05671 -31.02263 -30.26339 -29.60944 -27.43255 -24.11507 -23.44807 -22.14448 -21.68069 -21.32926 -19.95963 -18.84578 -18.76280 -18.09704 -17.57023 -16.99592 -16.90893 -16.78365 -16.30478 -15.79521 -15.53875 -15.05554 -14.84113 -14.63440 -14.34059 -14.08961 -14.00141 -13.88967 -13.79758 -13.68959 -13.46625 -13.25564 -13.18089 -13.03402 -12.82831 -12.62845 -12.47538 -12.30305 -12.03921 -12.01248 -11.88049 -11.74217 -11.48100 -11.31153 -11.24013 -10.76853 -10.74710 -10.13790 -9.94994 -8.28587 -6.31397 -0.77257 1.35493 1.37259 1.49837 1.56364 1.69930 2.22768 2.36763 2.93665 3.05220 3.06852 3.37307 3.72978 3.89662 4.04943 4.07011 4.11378 4.17642 4.21039 4.28375 4.32981 4.47941 4.65576 4.69799 4.78050 4.81483 4.86045 4.91700 4.92425 5.00812 5.07676 5.14535 5.19045 5.23493 5.31305 5.33027 5.54589 5.64270 5.68808 5.70868 6.30958 6.60401 6.76829 7.33111 7.33628 8.87858 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.042151 B = 0.001824 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.115134 B =15351.195972 C =15629.680816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.647 4.647 2 S 2.631 3.369 3 O -0.993 6.993 4 O -0.994 6.994 5 N -1.015 6.015 6 C 0.121 3.879 7 C -0.136 4.136 8 C 0.132 3.868 9 H 0.081 0.919 10 N -0.709 5.709 11 C 0.516 3.484 12 O -0.584 6.584 13 C -0.131 4.131 14 C -0.098 4.098 15 C -0.094 4.094 16 C -0.018 4.018 17 C -0.529 4.529 18 H 0.038 0.962 19 C 0.002 3.998 20 N -0.950 5.950 21 Si 0.947 3.053 22 H -0.267 1.267 23 H -0.283 1.283 24 H -0.252 1.252 25 C 0.117 3.883 26 H 0.144 0.856 27 H 0.150 0.850 28 H 0.149 0.851 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.420 0.580 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.012 0.988 41 H 0.013 0.987 42 H 0.266 0.734 43 H 0.103 0.897 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.339 23.798 -25.375 35.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.730 3.270 3 O -0.984 6.984 4 O -0.985 6.985 5 N -0.853 5.853 6 C -0.005 4.005 7 C -0.176 4.176 8 C 0.025 3.975 9 H 0.099 0.901 10 N -0.363 5.363 11 C 0.305 3.695 12 O -0.463 6.463 13 C -0.170 4.170 14 C -0.137 4.137 15 C -0.132 4.132 16 C -0.056 4.056 17 C -0.567 4.567 18 H 0.056 0.944 19 C -0.194 4.194 20 N -0.591 5.591 21 Si 0.771 3.229 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.176 1.176 25 C -0.009 4.009 26 H 0.162 0.838 27 H 0.169 0.831 28 H 0.168 0.832 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.259 0.741 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.031 0.969 41 H 0.031 0.969 42 H 0.074 0.926 43 H 0.121 0.879 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.004 24.317 -25.678 35.871 hybrid contribution -0.088 -0.486 0.878 1.007 sum -6.092 23.831 -24.800 34.930 Atomic orbital electron populations 1.30342 1.22580 1.13849 1.13365 1.04131 0.79512 0.72242 0.71161 1.93569 1.79857 1.39268 1.85729 1.93567 1.79827 1.62580 1.62524 1.58457 1.85416 1.14865 1.26580 1.22095 1.02302 0.94001 0.82062 1.23220 1.03077 0.93685 0.97630 1.21889 0.98279 0.85858 0.91512 0.90131 1.45800 1.31165 1.31717 1.27584 1.21126 0.83618 0.84644 0.80149 1.90705 1.27356 1.64379 1.63871 1.21679 1.01391 0.95967 0.98013 1.21282 0.98817 0.97263 0.96304 1.21339 0.98894 0.96625 0.96296 1.19591 0.96085 0.94604 0.95287 1.21555 1.11520 1.13490 1.10142 0.94410 1.26004 1.00768 0.95156 0.97501 1.70061 1.42600 1.24517 1.21969 0.85696 0.79743 0.78350 0.79100 1.19194 1.20858 1.17631 1.21883 1.03188 0.81574 0.94256 0.83770 0.83124 0.83226 0.91809 0.88089 0.88198 0.90590 0.74131 0.86293 0.86553 0.93236 0.92958 0.92333 0.92500 0.96924 0.96899 0.92564 0.87857 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -0.26 10.99 113.37 1.25 0.99 16 2 S 2.63 27.92 6.29 -56.49 -0.36 27.56 16 3 O -0.99 -18.39 17.60 -127.65 -2.25 -20.64 16 4 O -0.99 -18.49 17.60 -127.65 -2.25 -20.74 16 5 N -1.02 -9.62 3.62 -506.01 -1.83 -11.45 16 6 C 0.12 1.11 6.90 86.93 0.60 1.70 16 7 C -0.14 -1.36 6.79 32.06 0.22 -1.14 16 8 C 0.13 1.67 3.31 46.18 0.15 1.83 16 9 H 0.08 1.50 7.55 -2.39 -0.02 1.48 16 10 N -0.71 -8.55 5.18 -436.92 -2.26 -10.82 16 11 C 0.52 10.88 7.83 87.66 0.69 11.57 16 12 O -0.58 -18.24 15.63 -3.03 -0.05 -18.29 16 13 C -0.13 -2.55 5.70 29.85 0.17 -2.38 16 14 C -0.10 -2.99 4.50 30.59 0.14 -2.85 16 15 C -0.09 -3.46 5.15 30.59 0.16 -3.30 16 16 C -0.02 -0.87 4.04 29.85 0.12 -0.75 16 17 C -0.53 -30.81 9.66 25.60 0.25 -30.56 16 18 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 19 C 0.00 0.14 5.47 84.65 0.46 0.60 16 20 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 21 Si 0.95 45.64 27.47 68.60 1.88 47.52 16 22 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.25 -11.57 6.54 99.48 0.65 -10.92 16 25 C 0.12 1.07 6.64 86.73 0.58 1.65 16 26 H 0.14 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H 0.15 -0.46 8.14 -2.39 -0.02 -0.48 16 28 H 0.15 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.42 1.89 8.37 -92.70 -0.78 1.11 16 34 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.12 1.77 8.14 -2.39 -0.02 1.76 16 36 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 37 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.01 0.60 7.20 -2.38 -0.02 0.58 16 41 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 42 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 43 H 0.10 0.28 7.72 -2.39 -0.02 0.26 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -88.00 373.69 -1.88 -89.88 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: 0.15 Total: -0.53 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 4.78 Total: -22.64 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -3.80 Total: -82.12 kcal Atomic # 8 Polarization: -55.13 SS G_CDS: -4.54 Total: -59.67 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.52 kcal Atomic # 16 Polarization: 27.92 SS G_CDS: -0.36 Total: 27.56 kcal Total: -88.00 -1.88 -89.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593275724.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.398 kcal (2) G-P(sol) polarization free energy of solvation -87.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds