Wall clock time and date at job start Fri Apr 10 2020 18:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42097 * 110.54269 * 2 1 4 4 O 1.42103 * 110.53869 * 223.25114 * 2 1 3 5 5 N 1.65595 * 104.44945 * 111.62548 * 2 1 3 6 6 C 1.47027 * 125.64809 * 89.97833 * 5 2 1 7 7 C 1.54324 * 107.26999 * 178.97652 * 6 5 2 8 8 C 1.55161 * 102.94015 * 337.79916 * 7 6 5 9 9 H 1.09002 * 111.00787 * 277.39111 * 8 7 6 10 10 N 1.46504 * 110.99987 * 153.58178 * 8 7 6 11 11 C 1.34774 * 120.00240 * 89.58383 * 10 8 7 12 12 O 1.21283 * 119.99643 * 359.97438 * 11 10 8 13 13 C 1.50694 * 119.99993 * 179.97438 * 11 10 8 14 14 C 1.53001 * 109.47168 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47355 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47355 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.47168 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.47463 * 125.63230 * 269.97127 * 5 2 1 26 26 H 1.09000 * 109.47007 * 308.37528 * 1 2 3 27 27 H 1.09000 * 109.47539 * 68.37747 * 1 2 3 28 28 H 1.08999 * 109.47150 * 188.37470 * 1 2 3 29 29 H 1.08998 * 109.88404 * 59.55136 * 6 5 2 30 30 H 1.09000 * 109.88255 * 298.38703 * 6 5 2 31 31 H 1.09000 * 110.71581 * 219.44399 * 7 6 5 32 32 H 1.08992 * 110.87948 * 96.23889 * 7 6 5 33 33 H 0.97005 * 119.99919 * 269.58166 * 10 8 7 34 34 H 1.08994 * 109.47211 * 59.99931 * 13 11 10 35 35 H 1.09003 * 109.47615 * 299.99937 * 13 11 10 36 36 H 1.09002 * 109.46926 * 60.00175 * 14 13 11 37 37 H 1.08992 * 109.47494 * 300.00169 * 14 13 11 38 38 H 1.09002 * 109.46807 * 60.00291 * 15 14 13 39 39 H 1.08998 * 109.47285 * 299.99893 * 15 14 13 40 40 H 1.09007 * 109.46922 * 59.99890 * 16 15 14 41 41 H 1.09003 * 109.46836 * 300.00646 * 16 15 14 42 42 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 43 43 H 1.09010 * 110.34772 * 85.25221 * 25 5 2 44 44 H 1.09007 * 110.40453 * 322.92201 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5910 1.4907 6 6 2.4406 -2.0075 1.8219 7 6 2.8316 -2.0755 3.3132 8 6 3.3684 -0.6476 3.5971 9 1 4.4090 -0.5525 3.2871 10 7 3.2108 -0.2990 5.0113 11 6 4.1910 -0.5883 5.8899 12 8 5.2033 -1.1376 5.5099 13 6 4.0291 -0.2293 7.3445 14 6 5.2749 -0.6643 8.1189 15 6 5.1108 -0.2991 9.5956 16 6 6.3563 -0.7347 10.3702 17 6 6.1944 -0.3757 11.8247 18 1 5.2932 0.1139 12.1631 19 6 7.1970 -0.6721 12.7237 20 7 8.2943 -1.2687 12.3118 21 14 6.9966 -0.2264 14.5266 22 1 8.2055 -0.6493 15.2784 23 1 6.8208 1.2424 14.6568 24 1 5.8041 -0.9185 15.0780 25 6 2.4422 0.2167 2.7056 26 1 -0.3633 0.6380 0.8057 27 1 -0.3634 0.3787 -0.9553 28 1 -0.3633 -1.0167 0.1497 29 1 3.2446 -2.4145 1.2087 30 1 1.5222 -2.5699 1.6535 31 1 3.6118 -2.8196 3.4737 32 1 1.9617 -2.2909 3.9335 33 1 2.4010 0.1400 5.3153 34 1 3.1542 -0.7380 7.7491 35 1 3.8992 0.8488 7.4405 36 1 6.1501 -0.1558 7.7144 37 1 5.4043 -1.7422 8.0231 38 1 4.2355 -0.8073 10.0004 39 1 4.9817 0.7789 9.6912 40 1 7.2319 -0.2270 9.9654 41 1 6.4850 -1.8129 10.2745 42 1 8.9997 -1.4769 12.9442 43 1 1.4939 0.4014 3.2106 44 1 2.9290 1.1591 2.4543 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593275725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:24 Heat of formation + Delta-G solvation = -123.674991 kcal Electronic energy + Delta-G solvation = -23961.546978 eV Core-core repulsion = 20233.449254 eV Total energy + Delta-G solvation = -3728.097724 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.15957 -38.51280 -37.62415 -36.44785 -34.96181 -34.36444 -32.62555 -30.81271 -30.02925 -29.86005 -28.70290 -25.60941 -23.14565 -22.63087 -21.35987 -20.45825 -19.97374 -19.42117 -18.29105 -17.32161 -17.00910 -16.36617 -16.32751 -16.11898 -15.64288 -15.10836 -14.47743 -14.38230 -14.20285 -14.01301 -13.85948 -13.69891 -13.66362 -13.38721 -12.70499 -12.62370 -12.55466 -12.51756 -12.27641 -12.00976 -11.84941 -11.68690 -11.59088 -11.58565 -11.25335 -10.96902 -10.53876 -10.53151 -10.41161 -9.87842 -9.61445 -9.58618 -9.28850 -9.22383 -8.98998 -8.29824 -5.94697 -3.97304 -0.34009 2.01740 2.64432 2.97267 3.34479 3.35392 3.39911 3.41973 3.53378 3.89401 4.17702 4.19183 4.43718 4.49133 4.61117 4.69094 4.79847 4.85878 4.99499 5.05683 5.26312 5.29231 5.34862 5.38117 5.40557 5.46001 5.58144 5.71501 5.78442 5.86764 6.13060 6.23868 6.30113 6.54074 6.83576 7.01607 7.19791 7.33916 7.74209 7.90443 8.06576 8.19341 8.48225 9.10202 9.66173 11.16527 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.048214 B = 0.001718 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.607723 B =16298.198826 C =16448.969974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.673 4.673 2 S 2.629 3.371 3 O -0.950 6.950 4 O -0.950 6.950 5 N -1.013 6.013 6 C 0.121 3.879 7 C -0.142 4.142 8 C 0.136 3.864 9 H 0.107 0.893 10 N -0.731 5.731 11 C 0.515 3.485 12 O -0.530 6.530 13 C -0.138 4.138 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.288 1.288 23 H -0.277 1.277 24 H -0.278 1.278 25 C 0.110 3.890 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.401 0.599 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.072 0.928 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.112 1.817 -25.673 33.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.823 4.823 2 S 2.722 3.278 3 O -0.941 6.941 4 O -0.940 6.940 5 N -0.851 5.851 6 C -0.004 4.004 7 C -0.182 4.182 8 C 0.029 3.971 9 H 0.125 0.875 10 N -0.385 5.385 11 C 0.303 3.697 12 O -0.405 6.405 13 C -0.178 4.178 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.560 4.560 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.720 3.280 22 H -0.213 1.213 23 H -0.203 1.203 24 H -0.203 1.203 25 C -0.016 4.016 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.236 0.764 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.618 1.641 -26.649 33.132 hybrid contribution -1.274 0.276 1.455 1.953 sum -20.892 1.917 -25.194 32.785 Atomic orbital electron populations 1.30577 1.28578 1.11623 1.11512 1.04424 0.77560 0.73854 0.71915 1.93623 1.77571 1.37555 1.85312 1.93623 1.77550 1.61851 1.60982 1.58575 1.84868 1.15498 1.26169 1.21735 1.01474 0.80440 0.96736 1.23074 1.02305 0.98288 0.94525 1.22005 1.00873 0.93252 0.80936 0.87536 1.45966 1.21542 1.63610 1.07350 1.21143 0.82341 0.77590 0.88661 1.90722 1.28701 1.41115 1.79976 1.21798 1.02497 1.03219 0.90289 1.21456 0.95120 1.01792 0.95807 1.21650 1.00958 0.99814 0.92375 1.19094 0.91936 0.96687 0.94022 1.21244 1.02586 1.38716 0.93409 0.92819 1.25048 0.95377 0.95345 0.98826 1.69965 1.06915 1.41783 1.34753 0.86666 0.77367 0.78792 0.85180 1.21328 1.20301 1.20320 1.22203 0.99435 0.95014 0.84915 0.85329 0.85319 0.85356 0.90332 0.91355 0.89226 0.90109 0.76438 0.89087 0.89025 0.91773 0.91797 0.93501 0.93468 0.96582 0.96602 0.92988 0.90974 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -1.59 10.99 101.05 1.11 -0.48 16 2 S 2.63 16.59 6.29 -107.50 -0.68 15.92 16 3 O -0.95 -9.34 17.28 -57.54 -0.99 -10.34 16 4 O -0.95 -9.36 17.60 -57.54 -1.01 -10.37 16 5 N -1.01 -6.00 3.62 -111.39 -0.40 -6.40 16 6 C 0.12 0.69 6.90 -3.06 -0.02 0.67 16 7 C -0.14 -0.94 6.65 -24.89 -0.17 -1.11 16 8 C 0.14 1.07 3.37 -65.78 -0.22 0.85 16 9 H 0.11 1.10 7.63 -51.93 -0.40 0.70 16 10 N -0.73 -5.87 5.22 -51.73 -0.27 -6.14 16 11 C 0.51 6.38 7.83 -10.99 -0.09 6.29 16 12 O -0.53 -8.97 15.67 5.56 0.09 -8.88 16 13 C -0.14 -1.67 5.70 -27.89 -0.16 -1.82 16 14 C -0.10 -1.79 4.50 -26.73 -0.12 -1.91 16 15 C -0.11 -2.22 5.15 -26.73 -0.14 -2.36 16 16 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 17 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -27.43 13.29 55.43 0.74 -26.69 16 21 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.11 0.63 6.71 -2.51 -0.02 0.61 16 26 H 0.13 0.15 8.14 -51.92 -0.42 -0.28 16 27 H 0.13 0.19 8.14 -51.92 -0.42 -0.24 16 28 H 0.13 0.15 8.14 -51.92 -0.42 -0.27 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.40 1.91 8.54 -40.82 -0.35 1.56 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 37 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.07 0.21 8.00 -51.92 -0.42 -0.20 16 44 H 0.09 0.59 7.67 -51.93 -0.40 0.19 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -38.90 377.10 -9.67 -48.57 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -7.44 Total: -5.53 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -0.37 Total: -12.62 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.06 Total: -39.23 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -1.92 Total: -29.59 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 16.59 SS G_CDS: -0.68 Total: 15.92 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.90 -9.67 -48.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593275725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.105 kcal (2) G-P(sol) polarization free energy of solvation -38.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds