Wall clock time and date at job start Fri Apr 10 2020 18:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42097 * 110.54269 * 2 1 4 4 O 1.42103 * 110.53869 * 223.25114 * 2 1 3 5 5 N 1.65595 * 104.44945 * 111.62548 * 2 1 3 6 6 C 1.47027 * 125.64809 * 89.97833 * 5 2 1 7 7 C 1.54324 * 107.26999 * 178.97652 * 6 5 2 8 8 C 1.55161 * 102.94015 * 337.79916 * 7 6 5 9 9 H 1.09002 * 111.00787 * 277.39111 * 8 7 6 10 10 N 1.46504 * 110.99987 * 153.58178 * 8 7 6 11 11 C 1.34774 * 120.00240 * 89.58383 * 10 8 7 12 12 O 1.21283 * 119.99643 * 359.97438 * 11 10 8 13 13 C 1.50694 * 119.99993 * 179.97438 * 11 10 8 14 14 C 1.53001 * 109.47168 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47355 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47355 * 179.97438 * 15 14 13 17 17 C 1.50694 * 109.47168 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.47463 * 125.63230 * 269.97127 * 5 2 1 26 26 H 1.09000 * 109.47007 * 308.37528 * 1 2 3 27 27 H 1.09000 * 109.47539 * 68.37747 * 1 2 3 28 28 H 1.08999 * 109.47150 * 188.37470 * 1 2 3 29 29 H 1.08998 * 109.88404 * 59.55136 * 6 5 2 30 30 H 1.09000 * 109.88255 * 298.38703 * 6 5 2 31 31 H 1.09000 * 110.71581 * 219.44399 * 7 6 5 32 32 H 1.08992 * 110.87948 * 96.23889 * 7 6 5 33 33 H 0.97005 * 119.99919 * 269.58166 * 10 8 7 34 34 H 1.08994 * 109.47211 * 59.99931 * 13 11 10 35 35 H 1.09003 * 109.47615 * 299.99937 * 13 11 10 36 36 H 1.09002 * 109.46926 * 60.00175 * 14 13 11 37 37 H 1.08992 * 109.47494 * 300.00169 * 14 13 11 38 38 H 1.09002 * 109.46807 * 60.00291 * 15 14 13 39 39 H 1.08998 * 109.47285 * 299.99893 * 15 14 13 40 40 H 1.09007 * 109.46922 * 59.99890 * 16 15 14 41 41 H 1.09003 * 109.46836 * 300.00646 * 16 15 14 42 42 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 43 43 H 1.09010 * 110.34772 * 85.25221 * 25 5 2 44 44 H 1.09007 * 110.40453 * 322.92201 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5910 1.4907 6 6 2.4406 -2.0075 1.8219 7 6 2.8316 -2.0755 3.3132 8 6 3.3684 -0.6476 3.5971 9 1 4.4090 -0.5525 3.2871 10 7 3.2108 -0.2990 5.0113 11 6 4.1910 -0.5883 5.8899 12 8 5.2033 -1.1376 5.5099 13 6 4.0291 -0.2293 7.3445 14 6 5.2749 -0.6643 8.1189 15 6 5.1108 -0.2991 9.5956 16 6 6.3563 -0.7347 10.3702 17 6 6.1944 -0.3757 11.8247 18 1 5.2932 0.1139 12.1631 19 6 7.1970 -0.6721 12.7237 20 7 8.2943 -1.2687 12.3118 21 14 6.9966 -0.2264 14.5266 22 1 8.2055 -0.6493 15.2784 23 1 6.8208 1.2424 14.6568 24 1 5.8041 -0.9185 15.0780 25 6 2.4422 0.2167 2.7056 26 1 -0.3633 0.6380 0.8057 27 1 -0.3634 0.3787 -0.9553 28 1 -0.3633 -1.0167 0.1497 29 1 3.2446 -2.4145 1.2087 30 1 1.5222 -2.5699 1.6535 31 1 3.6118 -2.8196 3.4737 32 1 1.9617 -2.2909 3.9335 33 1 2.4010 0.1400 5.3153 34 1 3.1542 -0.7380 7.7491 35 1 3.8992 0.8488 7.4405 36 1 6.1501 -0.1558 7.7144 37 1 5.4043 -1.7422 8.0231 38 1 4.2355 -0.8073 10.0004 39 1 4.9817 0.7789 9.6912 40 1 7.2319 -0.2270 9.9654 41 1 6.4850 -1.8129 10.2745 42 1 8.9997 -1.4769 12.9442 43 1 1.4939 0.4014 3.2106 44 1 2.9290 1.1591 2.4543 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593275725.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:23 Heat of formation + Delta-G solvation = -154.700128 kcal Electronic energy + Delta-G solvation = -23962.892329 eV Core-core repulsion = 20233.449254 eV Total energy + Delta-G solvation = -3729.443075 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.00909 -39.22114 -38.22903 -37.05352 -36.61168 -35.20007 -34.57769 -31.81035 -30.95304 -30.25295 -29.53069 -27.30449 -24.40320 -23.46708 -22.25564 -21.68214 -21.30623 -19.92972 -18.79804 -18.40366 -18.05480 -17.71308 -16.99818 -16.88323 -16.76443 -16.48188 -15.75987 -15.47648 -14.98802 -14.71713 -14.50484 -14.43253 -14.13360 -13.93409 -13.91360 -13.75137 -13.57532 -13.30956 -13.25042 -13.17462 -13.01420 -12.78697 -12.67924 -12.43230 -12.35191 -12.12637 -12.08614 -12.00580 -11.80434 -11.34152 -11.32918 -11.15198 -10.74527 -10.52899 -10.10476 -9.97919 -8.17104 -6.29319 -0.77529 1.41358 1.45422 1.53239 1.55368 1.68604 2.22170 2.43363 2.94535 3.06402 3.15423 3.37049 3.73951 3.90199 4.03049 4.07564 4.10866 4.19218 4.20521 4.28060 4.33542 4.53476 4.69204 4.73563 4.79073 4.84669 4.90050 4.91404 4.93014 5.02271 5.06110 5.15831 5.23286 5.29484 5.36469 5.41327 5.54399 5.60546 5.80740 5.90188 6.26930 6.61021 6.89320 7.33731 7.40199 8.94819 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.048214 B = 0.001718 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.607723 B =16298.198826 C =16448.969974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.628 3.372 3 O -0.995 6.995 4 O -0.996 6.996 5 N -1.016 6.016 6 C 0.121 3.879 7 C -0.136 4.136 8 C 0.128 3.872 9 H 0.070 0.930 10 N -0.706 5.706 11 C 0.514 3.486 12 O -0.588 6.588 13 C -0.127 4.127 14 C -0.097 4.097 15 C -0.095 4.095 16 C 0.017 3.983 17 C -0.542 4.542 18 H 0.067 0.933 19 C -0.008 4.008 20 N -0.938 5.938 21 Si 0.970 3.030 22 H -0.286 1.286 23 H -0.265 1.265 24 H -0.264 1.264 25 C 0.115 3.885 26 H 0.152 0.848 27 H 0.144 0.856 28 H 0.151 0.849 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.423 0.577 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.039 0.961 37 H 0.042 0.958 38 H 0.062 0.938 39 H 0.061 0.939 40 H -0.017 1.017 41 H -0.016 1.016 42 H 0.262 0.738 43 H 0.114 0.886 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.635 2.902 -24.943 35.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.727 3.273 3 O -0.986 6.986 4 O -0.987 6.987 5 N -0.854 5.854 6 C -0.004 4.004 7 C -0.176 4.176 8 C 0.020 3.980 9 H 0.089 0.911 10 N -0.359 5.359 11 C 0.302 3.698 12 O -0.467 6.467 13 C -0.166 4.166 14 C -0.136 4.136 15 C -0.133 4.133 16 C -0.020 4.020 17 C -0.580 4.580 18 H 0.085 0.915 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.794 3.206 22 H -0.212 1.212 23 H -0.189 1.189 24 H -0.188 1.188 25 C -0.011 4.011 26 H 0.171 0.829 27 H 0.162 0.838 28 H 0.169 0.831 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.261 0.739 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.001 0.999 41 H 0.002 0.998 42 H 0.071 0.929 43 H 0.132 0.868 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.161 2.756 -25.937 35.554 hybrid contribution 0.112 -0.078 1.169 1.177 sum -24.048 2.678 -24.769 34.626 Atomic orbital electron populations 1.30312 1.22064 1.13900 1.13484 1.04172 0.79713 0.72180 0.71197 1.93564 1.79948 1.39319 1.85740 1.93563 1.79954 1.62661 1.62488 1.58408 1.85671 1.15446 1.25898 1.21769 1.02437 0.80687 0.95536 1.23012 1.02313 0.96596 0.95644 1.22008 0.99841 0.95144 0.80968 0.91147 1.45662 1.21204 1.62197 1.06881 1.21210 0.82226 0.77021 0.89326 1.90717 1.31176 1.43993 1.80828 1.21666 1.00481 1.05196 0.89270 1.21251 0.97249 1.00268 0.94796 1.21447 0.98068 1.00598 0.93185 1.19071 0.93915 0.94383 0.94622 1.21738 1.03126 1.38640 0.94467 0.91468 1.26115 0.94900 0.95076 1.04458 1.70132 1.07972 1.43058 1.36672 0.85428 0.77661 0.79095 0.78400 1.21195 1.18929 1.18848 1.22240 1.00601 0.93757 0.84470 0.82937 0.83765 0.83096 0.92297 0.88124 0.91476 0.87881 0.73874 0.85918 0.86199 0.94181 0.93920 0.91896 0.92058 0.99882 0.99755 0.92909 0.86796 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -0.31 10.99 113.37 1.25 0.94 16 2 S 2.63 30.55 6.29 -56.49 -0.36 30.20 16 3 O -0.99 -19.58 17.28 -127.65 -2.21 -21.79 16 4 O -1.00 -19.93 17.60 -127.65 -2.25 -22.18 16 5 N -1.02 -10.62 3.62 -506.31 -1.83 -12.45 16 6 C 0.12 1.25 6.90 86.73 0.60 1.85 16 7 C -0.14 -1.68 6.65 31.78 0.21 -1.47 16 8 C 0.13 1.94 3.37 46.38 0.16 2.10 16 9 H 0.07 1.60 7.63 -2.39 -0.02 1.58 16 10 N -0.71 -9.94 5.22 -435.96 -2.27 -12.22 16 11 C 0.51 12.37 7.83 87.66 0.69 13.06 16 12 O -0.59 -20.87 15.67 -3.04 -0.05 -20.92 16 13 C -0.13 -2.77 5.70 29.85 0.17 -2.60 16 14 C -0.10 -3.40 4.50 30.59 0.14 -3.26 16 15 C -0.10 -3.80 5.15 30.59 0.16 -3.64 16 16 C 0.02 0.94 4.97 29.85 0.15 1.09 16 17 C -0.54 -31.25 9.11 25.60 0.23 -31.02 16 18 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 19 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 20 N -0.94 -59.10 13.29 21.45 0.28 -58.82 16 21 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 22 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 25 C 0.12 1.08 6.71 86.85 0.58 1.67 16 26 H 0.15 -0.50 8.14 -2.39 -0.02 -0.52 16 27 H 0.14 -0.20 8.14 -2.39 -0.02 -0.22 16 28 H 0.15 -0.45 8.14 -2.39 -0.02 -0.47 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.42 2.33 8.54 -92.70 -0.79 1.54 16 34 H 0.12 1.97 8.14 -2.39 -0.02 1.96 16 35 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.04 1.56 8.10 -2.39 -0.02 1.54 16 37 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 39 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 40 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 41 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 42 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 43 H 0.11 0.15 8.00 -2.38 -0.02 0.13 16 44 H 0.08 0.99 7.67 -2.38 -0.02 0.97 16 Total: -1.00 -90.99 377.10 -1.67 -92.67 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: 0.19 Total: 0.19 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 4.79 Total: -21.32 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -3.82 Total: -83.49 kcal Atomic # 8 Polarization: -60.38 SS G_CDS: -4.50 Total: -64.88 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: 30.55 SS G_CDS: -0.36 Total: 30.20 kcal Total: -90.99 -1.67 -92.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593275725.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.033 kcal (2) G-P(sol) polarization free energy of solvation -90.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds