Wall clock time and date at job start Fri Apr 10 2020 18:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 110.54001 * 2 1 4 4 O 1.42094 * 110.54459 * 223.24974 * 2 1 3 5 5 N 1.65607 * 104.44904 * 111.62498 * 2 1 3 6 6 C 1.46924 * 120.63051 * 269.72253 * 5 2 1 7 7 C 1.53194 * 108.77334 * 233.88542 * 6 5 2 8 8 C 1.53038 * 109.31101 * 305.36035 * 7 6 5 9 9 C 1.53000 * 109.44956 * 181.38093 * 8 7 6 10 10 C 1.50704 * 109.46961 * 64.93807 * 9 8 7 11 11 O 1.21277 * 119.99817 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99514 * 179.97438 * 10 9 8 13 13 C 1.46509 * 119.99760 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47206 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.46822 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99833 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99623 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00222 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99655 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47197 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47395 * 119.99647 * 19 17 15 22 22 H 1.48500 * 109.46822 * 239.99198 * 19 17 15 23 23 C 1.53045 * 109.53516 * 61.36880 * 8 7 6 24 24 C 1.46926 * 120.62900 * 90.00281 * 5 2 1 25 25 H 1.08995 * 109.47054 * 308.37337 * 1 2 3 26 26 H 1.09000 * 109.46981 * 68.37802 * 1 2 3 27 27 H 1.09002 * 109.46488 * 188.37370 * 1 2 3 28 28 H 1.09004 * 109.58777 * 353.67051 * 6 5 2 29 29 H 1.08994 * 109.58607 * 114.09387 * 6 5 2 30 30 H 1.09005 * 109.49558 * 185.41228 * 7 6 5 31 31 H 1.09001 * 109.49919 * 65.31913 * 7 6 5 32 32 H 1.08994 * 109.46487 * 301.34997 * 8 7 6 33 33 H 1.09000 * 109.47300 * 184.94466 * 9 8 7 34 34 H 1.09009 * 109.46960 * 304.93991 * 9 8 7 35 35 H 0.96998 * 120.00822 * 0.02562 * 12 10 9 36 36 H 1.09001 * 109.46830 * 300.00559 * 13 12 10 37 37 H 1.09005 * 109.46742 * 59.99990 * 13 12 10 38 38 H 1.09000 * 109.46877 * 300.00112 * 14 13 12 39 39 H 1.09001 * 109.46700 * 59.99999 * 14 13 12 40 40 H 0.96996 * 120.00331 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.49685 * 178.67744 * 23 8 7 42 42 H 1.09001 * 109.52360 * 58.59815 * 23 8 7 43 43 H 1.09001 * 109.58178 * 245.90560 * 24 5 2 44 44 H 1.08998 * 109.58625 * 6.18576 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2273 -0.5910 1.4908 6 6 2.4200 0.3177 2.6292 7 6 3.8008 0.0574 3.2395 8 6 3.9270 -1.4266 3.5915 9 6 5.2920 -1.6837 4.2329 10 6 5.3750 -0.9520 5.5478 11 8 4.4348 -0.2904 5.9339 12 7 6.4938 -1.0337 6.2949 13 6 6.5743 -0.3228 7.5734 14 6 7.9394 -0.5798 8.2148 15 6 8.0219 0.1509 9.5302 16 1 7.1845 0.7401 9.8740 17 6 9.1667 0.0682 10.2941 18 7 10.1864 -0.6488 9.8751 19 14 9.2692 0.9745 11.9242 20 1 7.9987 1.7044 12.1655 21 1 9.4956 -0.0017 13.0201 22 1 10.3952 1.9418 11.8827 23 6 3.7949 -2.2673 2.3195 24 6 2.4141 -2.0334 1.6987 25 1 -0.3633 0.6379 0.8056 26 1 -0.3633 0.3787 -0.9554 27 1 -0.3632 -1.0168 0.1497 28 1 2.3608 1.3507 2.2863 29 1 1.6491 0.1343 3.3776 30 1 3.9183 0.6567 4.1423 31 1 4.5735 0.3277 2.5197 32 1 3.1389 -1.7020 4.2922 33 1 5.4178 -2.7529 4.4035 34 1 6.0789 -1.3269 3.5682 35 1 7.2456 -1.5631 5.9862 36 1 6.4487 0.7465 7.4031 37 1 5.7872 -0.6797 8.2377 38 1 8.0652 -1.6491 8.3850 39 1 8.7260 -0.2226 7.5502 40 1 10.9916 -0.7074 10.4127 41 1 3.9083 -3.3226 2.5675 42 1 4.5676 -1.9757 1.6082 43 1 1.6427 -2.4085 2.3713 44 1 2.3485 -2.5520 0.7422 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594004047.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:26 Heat of formation + Delta-G solvation = -128.028351 kcal Electronic energy + Delta-G solvation = -24688.635231 eV Core-core repulsion = 20960.348731 eV Total energy + Delta-G solvation = -3728.286500 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.81019 -38.30702 -37.49273 -36.25820 -34.94383 -33.78086 -32.85012 -31.25314 -30.09048 -29.84662 -28.19113 -24.87471 -23.63536 -23.21705 -21.04419 -20.54088 -19.86197 -19.05531 -18.03131 -16.80157 -16.64074 -16.40868 -16.24763 -15.41126 -15.13958 -14.95194 -14.63538 -14.47383 -14.19134 -14.09162 -13.81241 -13.60183 -13.50720 -13.23015 -12.93415 -12.44785 -12.39728 -12.35251 -12.19084 -12.07916 -11.80605 -11.40955 -11.35492 -11.20522 -11.06421 -11.00544 -10.69092 -10.63358 -10.48604 -10.31761 -9.75996 -9.45823 -9.30747 -9.08393 -8.54214 -8.35231 -6.10799 -4.13587 -0.11750 2.26952 3.02608 3.27277 3.34876 3.39635 3.52356 3.70322 3.75239 4.20885 4.40497 4.43611 4.48995 4.63512 4.69667 4.88069 4.95084 5.12291 5.19663 5.26086 5.26337 5.34825 5.41288 5.42447 5.48313 5.66844 5.71932 5.80379 5.85838 6.04223 6.13914 6.33328 6.34497 6.35296 6.45524 6.73337 6.94211 7.50774 7.60464 7.87592 8.03269 8.26763 8.67533 8.92807 9.51390 11.00823 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.037876 B = 0.002045 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.071052 B =13687.898402 C =13977.148462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.675 4.675 2 S 2.609 3.391 3 O -0.954 6.954 4 O -0.957 6.957 5 N -0.999 5.999 6 C 0.120 3.880 7 C -0.132 4.132 8 C -0.068 4.068 9 C -0.140 4.140 10 C 0.504 3.496 11 O -0.550 6.550 12 N -0.724 5.724 13 C 0.122 3.878 14 C 0.012 3.988 15 C -0.521 4.521 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.128 4.128 24 C 0.120 3.880 25 H 0.128 0.872 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.397 0.603 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.261 0.739 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.799 -4.072 -20.732 28.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.702 3.298 3 O -0.944 6.944 4 O -0.948 6.948 5 N -0.838 5.838 6 C -0.005 4.005 7 C -0.171 4.171 8 C -0.087 4.087 9 C -0.180 4.180 10 C 0.290 3.710 11 O -0.429 6.429 12 N -0.374 5.374 13 C -0.001 4.001 14 C -0.026 4.026 15 C -0.560 4.560 16 H 0.078 0.922 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.167 4.167 24 C -0.006 4.006 25 H 0.146 0.854 26 H 0.143 0.857 27 H 0.145 0.855 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.231 0.769 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.722 -3.365 -21.064 28.381 hybrid contribution -0.031 0.003 1.130 1.130 sum -18.753 -3.361 -19.934 27.574 Atomic orbital electron populations 1.30602 1.29062 1.11476 1.11268 1.04894 0.77616 0.74096 0.73185 1.93614 1.77388 1.37797 1.85625 1.93595 1.77488 1.61702 1.61975 1.57721 1.84055 1.14610 1.27448 1.21509 0.98438 0.93040 0.87483 1.22052 0.96156 0.96879 1.02019 1.20832 0.96506 0.95520 0.95846 1.21764 0.99601 1.01548 0.95079 1.20603 0.82749 0.81643 0.85979 1.90619 1.37281 1.42283 1.72746 1.46389 1.16837 1.51382 1.22791 1.21696 1.01051 0.95398 0.81919 1.19328 0.89771 0.97740 0.95728 1.21093 1.00623 1.30274 1.03969 0.92222 1.25006 0.95630 0.95410 0.98332 1.69958 1.04836 1.40164 1.38333 0.86456 0.78153 0.79559 0.83390 1.19592 1.20942 1.20930 1.21933 0.97081 1.00246 0.97400 1.21445 0.97863 0.79371 1.01881 0.85378 0.85656 0.85489 0.88983 0.91206 0.88340 0.91937 0.90109 0.89049 0.89119 0.76941 0.92656 0.92681 0.95996 0.95972 0.92892 0.90589 0.91158 0.91368 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -2.75 10.99 101.05 1.11 -1.64 16 2 S 2.61 20.76 6.10 -107.50 -0.66 20.11 16 3 O -0.95 -11.07 16.58 -57.54 -0.95 -12.02 16 4 O -0.96 -10.41 16.59 -57.54 -0.95 -11.36 16 5 N -1.00 -7.84 3.22 -113.53 -0.37 -8.21 16 6 C 0.12 1.07 6.43 -3.71 -0.02 1.04 16 7 C -0.13 -1.45 5.11 -26.61 -0.14 -1.59 16 8 C -0.07 -0.68 1.80 -90.58 -0.16 -0.84 16 9 C -0.14 -1.49 5.17 -27.88 -0.14 -1.63 16 10 C 0.50 7.78 7.54 -10.99 -0.08 7.70 16 11 O -0.55 -10.20 13.97 5.56 0.08 -10.12 16 12 N -0.72 -12.06 5.56 -60.29 -0.33 -12.39 16 13 C 0.12 2.54 5.61 -4.04 -0.02 2.51 16 14 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 15 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 16 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 19 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.13 -1.00 5.36 -26.61 -0.14 -1.14 16 24 C 0.12 0.82 6.43 -3.71 -0.02 0.80 16 25 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.12 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 28 H 0.09 0.81 6.86 -51.93 -0.36 0.45 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 1.32 5.93 -51.93 -0.31 1.01 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.87 7.95 -51.93 -0.41 0.46 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 35 H 0.40 5.72 8.47 -40.82 -0.35 5.38 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.58 6.86 -51.93 -0.36 0.22 16 LS Contribution 366.37 15.07 5.52 5.52 Total: -1.00 -35.73 366.37 -9.37 -45.10 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.24 Total: 0.19 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -0.18 Total: -7.80 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.04 Total: -45.89 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -1.83 Total: -33.50 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 20.76 SS G_CDS: -0.66 Total: 20.11 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.73 -9.37 -45.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594004047.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.926 kcal (2) G-P(sol) polarization free energy of solvation -35.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds