Wall clock time and date at job start Fri Apr 10 2020 18:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42102 * 110.54001 * 2 1 4 4 O 1.42094 * 110.54459 * 223.24974 * 2 1 3 5 5 N 1.65607 * 104.44904 * 111.62498 * 2 1 3 6 6 C 1.46924 * 120.63051 * 269.72253 * 5 2 1 7 7 C 1.53194 * 108.77334 * 233.88542 * 6 5 2 8 8 C 1.53038 * 109.31101 * 305.36035 * 7 6 5 9 9 C 1.53000 * 109.44956 * 181.38093 * 8 7 6 10 10 C 1.50704 * 109.46961 * 64.93807 * 9 8 7 11 11 O 1.21277 * 119.99817 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99514 * 179.97438 * 10 9 8 13 13 C 1.46509 * 119.99760 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47206 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.46822 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99833 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99623 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00222 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99655 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47197 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47395 * 119.99647 * 19 17 15 22 22 H 1.48500 * 109.46822 * 239.99198 * 19 17 15 23 23 C 1.53045 * 109.53516 * 61.36880 * 8 7 6 24 24 C 1.46926 * 120.62900 * 90.00281 * 5 2 1 25 25 H 1.08995 * 109.47054 * 308.37337 * 1 2 3 26 26 H 1.09000 * 109.46981 * 68.37802 * 1 2 3 27 27 H 1.09002 * 109.46488 * 188.37370 * 1 2 3 28 28 H 1.09004 * 109.58777 * 353.67051 * 6 5 2 29 29 H 1.08994 * 109.58607 * 114.09387 * 6 5 2 30 30 H 1.09005 * 109.49558 * 185.41228 * 7 6 5 31 31 H 1.09001 * 109.49919 * 65.31913 * 7 6 5 32 32 H 1.08994 * 109.46487 * 301.34997 * 8 7 6 33 33 H 1.09000 * 109.47300 * 184.94466 * 9 8 7 34 34 H 1.09009 * 109.46960 * 304.93991 * 9 8 7 35 35 H 0.96998 * 120.00822 * 0.02562 * 12 10 9 36 36 H 1.09001 * 109.46830 * 300.00559 * 13 12 10 37 37 H 1.09005 * 109.46742 * 59.99990 * 13 12 10 38 38 H 1.09000 * 109.46877 * 300.00112 * 14 13 12 39 39 H 1.09001 * 109.46700 * 59.99999 * 14 13 12 40 40 H 0.96996 * 120.00331 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.49685 * 178.67744 * 23 8 7 42 42 H 1.09001 * 109.52360 * 58.59815 * 23 8 7 43 43 H 1.09001 * 109.58178 * 245.90560 * 24 5 2 44 44 H 1.08998 * 109.58625 * 6.18576 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2273 -0.5910 1.4908 6 6 2.4200 0.3177 2.6292 7 6 3.8008 0.0574 3.2395 8 6 3.9270 -1.4266 3.5915 9 6 5.2920 -1.6837 4.2329 10 6 5.3750 -0.9520 5.5478 11 8 4.4348 -0.2904 5.9339 12 7 6.4938 -1.0337 6.2949 13 6 6.5743 -0.3228 7.5734 14 6 7.9394 -0.5798 8.2148 15 6 8.0219 0.1509 9.5302 16 1 7.1845 0.7401 9.8740 17 6 9.1667 0.0682 10.2941 18 7 10.1864 -0.6488 9.8751 19 14 9.2692 0.9745 11.9242 20 1 7.9987 1.7044 12.1655 21 1 9.4956 -0.0017 13.0201 22 1 10.3952 1.9418 11.8827 23 6 3.7949 -2.2673 2.3195 24 6 2.4141 -2.0334 1.6987 25 1 -0.3633 0.6379 0.8056 26 1 -0.3633 0.3787 -0.9554 27 1 -0.3632 -1.0168 0.1497 28 1 2.3608 1.3507 2.2863 29 1 1.6491 0.1343 3.3776 30 1 3.9183 0.6567 4.1423 31 1 4.5735 0.3277 2.5197 32 1 3.1389 -1.7020 4.2922 33 1 5.4178 -2.7529 4.4035 34 1 6.0789 -1.3269 3.5682 35 1 7.2456 -1.5631 5.9862 36 1 6.4487 0.7465 7.4031 37 1 5.7872 -0.6797 8.2377 38 1 8.0652 -1.6491 8.3850 39 1 8.7260 -0.2226 7.5502 40 1 10.9916 -0.7074 10.4127 41 1 3.9083 -3.3226 2.5675 42 1 4.5676 -1.9757 1.6082 43 1 1.6427 -2.4085 2.3713 44 1 2.3485 -2.5520 0.7422 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594004047.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:26 Heat of formation + Delta-G solvation = -155.203607 kcal Electronic energy + Delta-G solvation = -24689.813639 eV Core-core repulsion = 20960.348731 eV Total energy + Delta-G solvation = -3729.464908 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.93865 -39.20260 -38.21736 -36.98894 -36.56852 -34.79039 -34.61483 -31.92160 -31.73751 -30.28946 -29.27886 -26.64654 -24.37740 -24.16574 -22.78734 -21.50449 -20.97075 -19.70962 -18.69193 -18.56354 -17.80168 -17.27802 -17.04451 -16.69378 -16.54217 -16.42100 -15.57164 -15.46018 -15.25802 -14.90064 -14.76138 -14.49792 -14.30811 -13.99528 -13.94515 -13.87221 -13.31592 -13.19502 -13.16194 -13.06099 -12.95415 -12.80680 -12.62829 -12.50737 -12.22393 -12.04276 -11.97503 -11.78590 -11.63997 -11.51012 -11.38708 -11.22434 -10.61692 -10.57722 -9.93881 -9.85834 -8.24883 -6.35275 -0.68539 1.40319 1.41374 1.54442 1.68173 1.77714 2.32310 2.50194 2.98248 3.09767 3.18402 3.65016 3.81457 3.87366 3.99715 4.10667 4.17309 4.31008 4.35524 4.49104 4.51210 4.57295 4.59245 4.63836 4.72779 4.86981 4.91193 4.93990 4.97151 5.00558 5.05069 5.16074 5.28770 5.33819 5.41927 5.52871 5.58019 5.58905 5.74270 5.79950 6.16511 6.72549 6.78670 7.34175 7.39417 8.87080 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.037876 B = 0.002045 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.071052 B =13687.898402 C =13977.148462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.610 3.390 3 O -1.000 7.000 4 O -0.992 6.992 5 N -1.001 6.001 6 C 0.123 3.877 7 C -0.135 4.135 8 C -0.065 4.065 9 C -0.130 4.130 10 C 0.502 3.498 11 O -0.582 6.582 12 N -0.724 5.724 13 C 0.142 3.858 14 C 0.022 3.978 15 C -0.546 4.546 16 H 0.058 0.942 17 C 0.005 3.995 18 N -0.927 5.927 19 Si 0.965 3.035 20 H -0.266 1.266 21 H -0.276 1.276 22 H -0.277 1.277 23 C -0.125 4.125 24 C 0.113 3.887 25 H 0.144 0.856 26 H 0.142 0.858 27 H 0.151 0.849 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.409 0.591 36 H 0.042 0.958 37 H 0.045 0.955 38 H 0.008 0.992 39 H 0.006 0.994 40 H 0.266 0.734 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.604 -5.013 -21.161 29.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.803 4.803 2 S 2.708 3.292 3 O -0.991 6.991 4 O -0.983 6.983 5 N -0.839 5.839 6 C -0.002 4.002 7 C -0.174 4.174 8 C -0.084 4.084 9 C -0.170 4.170 10 C 0.290 3.710 11 O -0.463 6.463 12 N -0.375 5.375 13 C 0.018 3.982 14 C -0.016 4.016 15 C -0.584 4.584 16 H 0.076 0.924 17 C -0.193 4.193 18 N -0.566 5.566 19 Si 0.790 3.210 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.203 1.203 23 C -0.164 4.164 24 C -0.011 4.011 25 H 0.163 0.837 26 H 0.160 0.840 27 H 0.169 0.831 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.138 0.862 34 H 0.123 0.877 35 H 0.245 0.755 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.027 0.973 39 H 0.025 0.975 40 H 0.075 0.925 41 H 0.117 0.883 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.480 -4.326 -21.520 30.021 hybrid contribution 0.467 0.294 1.223 1.341 sum -20.013 -4.033 -20.298 28.788 Atomic orbital electron populations 1.30360 1.23286 1.13670 1.13016 1.04611 0.79515 0.72526 0.72548 1.93554 1.79666 1.39790 1.86085 1.93545 1.79550 1.62192 1.62994 1.57580 1.84811 1.14901 1.26626 1.21413 0.97508 0.93199 0.88062 1.22011 0.97400 0.97481 1.00548 1.20820 0.95760 0.95020 0.96772 1.21820 1.00679 1.02423 0.92084 1.21472 0.81458 0.81046 0.87005 1.90610 1.38312 1.43600 1.73737 1.46254 1.18114 1.51494 1.21621 1.21149 0.98417 0.95043 0.83613 1.19138 0.91254 0.96337 0.94835 1.21509 1.00841 1.30689 1.05380 0.92383 1.25889 0.95226 0.96182 1.02048 1.70059 1.05410 1.41302 1.39852 0.85389 0.78353 0.78398 0.78857 1.18968 1.20152 1.20281 1.21931 0.97621 1.00999 0.95854 1.21637 0.97927 0.78747 1.02796 0.83726 0.83981 0.83109 0.89460 0.89761 0.91257 0.92928 0.90649 0.86216 0.87693 0.75530 0.93959 0.93689 0.97325 0.97530 0.92548 0.88346 0.92018 0.89078 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.11 10.99 113.37 1.25 -1.86 16 2 S 2.61 38.91 6.10 -56.49 -0.34 38.57 16 3 O -1.00 -23.53 16.58 -127.65 -2.12 -25.65 16 4 O -0.99 -20.89 16.59 -127.65 -2.12 -23.01 16 5 N -1.00 -14.32 3.22 -513.09 -1.65 -15.97 16 6 C 0.12 2.13 6.43 86.36 0.56 2.68 16 7 C -0.14 -3.00 5.11 30.67 0.16 -2.84 16 8 C -0.06 -1.20 1.80 -10.77 -0.02 -1.22 16 9 C -0.13 -2.57 5.17 29.85 0.15 -2.41 16 10 C 0.50 15.34 7.54 87.66 0.66 16.00 16 11 O -0.58 -21.83 13.97 -3.02 -0.04 -21.88 16 12 N -0.72 -24.12 5.56 -463.04 -2.57 -26.69 16 13 C 0.14 6.04 5.61 86.38 0.48 6.53 16 14 C 0.02 1.10 5.09 29.85 0.15 1.25 16 15 C -0.55 -30.56 9.11 25.60 0.23 -30.33 16 16 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 17 C 0.01 0.29 5.46 84.66 0.46 0.76 16 18 N -0.93 -54.38 13.29 21.45 0.28 -54.09 16 19 Si 0.97 43.68 29.54 68.60 2.03 45.70 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 C -0.13 -1.68 5.36 30.67 0.16 -1.51 16 24 C 0.11 1.29 6.43 86.36 0.56 1.85 16 25 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 28 H 0.09 1.57 6.86 -2.38 -0.02 1.55 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.94 5.93 -2.38 -0.01 1.93 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.51 7.95 -2.39 -0.02 1.49 16 33 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.41 11.64 8.47 -92.71 -0.79 10.85 16 36 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.04 1.99 8.14 -2.38 -0.02 1.98 16 38 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.10 1.02 6.86 -2.39 -0.02 1.00 16 Total: -1.00 -78.90 366.37 -1.53 -80.43 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.20 Total: 13.71 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 4.81 Total: -11.12 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -3.94 Total: -96.76 kcal Atomic # 8 Polarization: -66.25 SS G_CDS: -4.28 Total: -70.53 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 38.91 SS G_CDS: -0.34 Total: 38.57 kcal Total: -78.90 -1.53 -80.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594004047.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.778 kcal (2) G-P(sol) polarization free energy of solvation -78.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds