Wall clock time and date at job start Fri Apr 10 2020 18:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00313 * 2 1 4 4 C 1.52997 * 109.47396 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47212 * 64.99584 * 4 3 2 6 6 C 1.46494 * 120.00080 * 275.00347 * 5 4 3 7 7 C 1.50697 * 109.47607 * 84.99862 * 6 5 4 8 8 H 1.08003 * 119.99367 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00325 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99491 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00078 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46861 * 89.99899 * 11 9 7 13 13 H 1.48500 * 109.47003 * 209.99763 * 11 9 7 14 14 H 1.48499 * 109.47122 * 329.99982 * 11 9 7 15 15 S 1.65596 * 119.99655 * 94.99926 * 5 4 3 16 16 O 1.42103 * 106.40201 * 203.53703 * 15 5 4 17 17 O 1.42095 * 106.40562 * 336.46073 * 15 5 4 18 18 N 1.65601 * 107.21751 * 90.00120 * 15 5 4 19 19 C 1.45309 * 118.83137 * 89.99991 * 18 15 5 20 20 C 1.51704 * 112.00648 * 235.87132 * 19 18 15 21 21 C 1.51279 * 112.95358 * 318.23541 * 20 19 18 22 22 H 1.08994 * 114.34237 * 163.72556 * 21 20 19 23 23 C 1.52116 * 120.85096 * 308.62909 * 21 20 19 24 24 C 1.51968 * 120.67391 * 20.74919 * 21 20 19 25 25 H 1.08997 * 117.35535 * 142.22302 * 24 21 20 26 26 C 1.45534 * 118.82760 * 269.72809 * 18 15 5 27 27 H 1.08997 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46799 * 300.00326 * 1 2 3 29 29 H 1.08998 * 109.47187 * 59.99969 * 1 2 3 30 30 H 1.09001 * 109.46993 * 59.99365 * 3 2 1 31 31 H 1.09004 * 109.46505 * 300.00140 * 3 2 1 32 32 H 1.09002 * 109.47153 * 304.99576 * 4 3 2 33 33 H 1.09001 * 109.46832 * 184.99767 * 4 3 2 34 34 H 1.08998 * 109.46996 * 205.00499 * 6 5 4 35 35 H 1.09004 * 109.47165 * 324.99422 * 6 5 4 36 36 H 0.97007 * 119.99732 * 180.02562 * 10 9 7 37 37 H 1.09003 * 108.97347 * 356.51556 * 19 18 15 38 38 H 1.08997 * 108.98115 * 115.30513 * 19 18 15 39 39 H 1.09003 * 108.78869 * 79.13236 * 20 19 18 40 40 H 1.09003 * 108.79172 * 197.33526 * 20 19 18 41 41 H 1.08999 * 117.54114 * 217.65461 * 23 21 20 42 42 H 1.08999 * 117.54128 * 2.91902 * 23 21 20 43 43 H 1.09008 * 109.21518 * 260.83398 * 26 18 15 44 44 H 1.08996 * 109.21768 * 20.15894 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0003 -0.8951 -1.3781 7 6 2.6348 -1.3877 -1.7826 8 1 1.8293 -0.6840 -1.9318 9 6 2.4139 -2.7368 -1.9622 10 7 3.3950 -3.5936 -1.7809 11 14 0.7210 -3.3475 -2.4628 12 1 0.6276 -3.3878 -3.9444 13 1 0.5050 -4.7110 -1.9158 14 1 -0.3152 -2.4289 -1.9263 15 16 4.4453 1.5128 -2.5263 16 8 4.2757 0.7255 -3.6970 17 8 3.8177 2.7740 -2.3402 18 7 6.0733 1.7730 -2.3696 19 6 6.9954 0.8398 -2.9943 20 6 7.9749 0.2536 -1.9952 21 6 8.5054 1.2793 -1.0179 22 1 8.9795 0.8539 -0.1334 23 6 9.0996 2.5906 -1.5091 24 6 7.7517 2.5751 -0.7685 25 1 7.7372 2.9577 0.2520 26 6 6.5294 2.9315 -1.6161 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8515 0.5683 0.8410 33 1 3.9785 2.1765 0.0889 34 1 4.7294 -1.1824 -2.1357 35 1 4.2775 -1.3373 -0.4211 36 1 3.2397 -4.5427 -1.9076 37 1 6.4256 0.0294 -3.4491 38 1 7.5536 1.3602 -3.7724 39 1 7.4753 -0.5379 -1.4366 40 1 8.8142 -0.1799 -2.5391 41 1 9.9641 2.9839 -0.9742 42 1 9.0830 2.7808 -2.5822 43 1 6.7906 3.7306 -2.3099 44 1 5.7269 3.2731 -0.9625 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595358984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:36 Heat of formation + Delta-G solvation = -82.226408 kcal Electronic energy + Delta-G solvation = -27334.501082 eV Core-core repulsion = 23608.200703 eV Total energy + Delta-G solvation = -3726.300379 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.39950 -37.47423 -36.69541 -35.20337 -35.08534 -34.40066 -32.36523 -31.47155 -29.31200 -26.56307 -26.08530 -25.35010 -24.04815 -22.59787 -21.73068 -21.51330 -19.43124 -17.77348 -17.37227 -17.00458 -16.49386 -15.89831 -15.53071 -15.48974 -15.07020 -14.75580 -14.35157 -14.19302 -14.12792 -13.96705 -13.35714 -12.88075 -12.66334 -12.51556 -12.26781 -12.09071 -11.98988 -11.68582 -11.51307 -11.44189 -11.39787 -11.10280 -11.05878 -10.84788 -10.77929 -10.67695 -10.50416 -10.23252 -10.01333 -9.86210 -9.79821 -9.52827 -8.82103 -8.64512 -8.22148 -7.97249 -5.85107 -3.79515 1.18722 3.40376 3.41742 3.48015 3.49625 3.73411 4.08166 4.50721 4.61605 4.63381 4.68846 4.80447 4.87513 5.07509 5.13392 5.31842 5.43474 5.48760 5.53226 5.58883 5.66069 5.69132 5.73497 5.78472 5.82079 5.89760 5.93655 6.01497 6.02389 6.02765 6.15722 6.30949 6.33309 6.37172 6.40816 6.53807 6.89842 7.34823 7.54092 7.72020 7.98400 8.15887 8.44385 9.20522 9.79369 11.25408 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016899 B = 0.005452 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.511186 B = 5134.185611 C = 5834.936415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.332 6.332 3 C 0.041 3.959 4 C 0.141 3.859 5 N -0.986 5.986 6 C 0.263 3.737 7 C -0.482 4.482 8 H 0.070 0.930 9 C 0.055 3.945 10 N -0.908 5.908 11 Si 0.889 3.111 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.274 1.274 15 S 2.772 3.228 16 O -0.960 6.960 17 O -0.997 6.997 18 N -1.002 6.002 19 C 0.120 3.880 20 C -0.106 4.106 21 C -0.122 4.122 22 H 0.098 0.902 23 C -0.181 4.181 24 C -0.164 4.164 25 H 0.110 0.890 26 C 0.156 3.844 27 H 0.080 0.920 28 H 0.025 0.975 29 H 0.030 0.970 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.033 0.967 36 H 0.258 0.742 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.285 11.792 4.295 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.250 6.250 3 C -0.038 4.038 4 C 0.014 3.986 5 N -0.828 5.828 6 C 0.141 3.859 7 C -0.522 4.522 8 H 0.088 0.912 9 C -0.145 4.145 10 N -0.550 5.550 11 Si 0.718 3.282 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.199 1.199 15 S 2.782 3.218 16 O -0.944 6.944 17 O -0.981 6.981 18 N -0.840 5.840 19 C -0.006 4.006 20 C -0.145 4.145 21 C -0.141 4.141 22 H 0.116 0.884 23 C -0.218 4.218 24 C -0.184 4.184 25 H 0.128 0.872 26 C 0.030 3.970 27 H 0.098 0.902 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.118 0.882 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.907 11.767 3.575 14.620 hybrid contribution -0.880 -0.373 0.189 0.974 sum 7.027 11.394 3.764 13.906 Atomic orbital electron populations 1.22635 0.83666 1.02139 0.98176 1.88541 1.17170 1.24628 1.94643 1.22920 0.95075 0.86646 0.99195 1.21027 0.92534 0.96940 0.88139 1.57778 1.78193 1.19412 1.27416 1.19027 0.97901 0.71359 0.97578 1.21515 0.95929 0.91932 1.42788 0.91168 1.24831 0.96553 0.96800 0.96272 1.69922 1.31353 1.02148 1.51538 0.86659 0.85234 0.77715 0.78567 1.21064 1.21676 1.19862 1.02329 0.72589 0.72721 0.74186 1.93622 1.84383 1.70342 1.46029 1.93519 1.74222 1.43327 1.87052 1.57570 1.25956 1.34237 1.66195 1.20705 0.92661 0.92808 0.94435 1.20748 0.98889 0.97650 0.97192 1.21410 1.01973 0.89560 1.01119 0.88406 1.23097 0.96363 1.01744 1.00587 1.22529 0.92943 1.03048 0.99889 0.87238 1.20475 0.95941 0.87013 0.93547 0.90152 0.95684 0.95102 0.94071 0.93639 0.90095 0.90797 0.95053 0.94911 0.93281 0.88208 0.92232 0.90329 0.90524 0.89040 0.88752 0.91709 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.90 101.05 1.10 1.65 16 2 O -0.33 -6.98 6.62 -35.23 -0.23 -7.21 16 3 C 0.04 0.73 6.22 37.16 0.23 0.96 16 4 C 0.14 2.42 5.81 -4.04 -0.02 2.40 16 5 N -0.99 -20.13 2.86 -115.67 -0.33 -20.46 16 6 C 0.26 6.48 5.04 -5.20 -0.03 6.46 16 7 C -0.48 -13.29 7.22 -34.44 -0.25 -13.54 16 8 H 0.07 1.96 6.09 -52.48 -0.32 1.64 16 9 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.91 -26.73 13.29 55.43 0.74 -26.00 16 11 Si 0.89 22.19 29.54 -169.99 -5.02 17.16 16 12 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 14 H -0.27 -6.51 7.04 56.52 0.40 -6.11 16 15 S 2.77 54.94 5.87 -107.50 -0.63 54.31 16 16 O -0.96 -22.82 15.57 -57.17 -0.89 -23.71 16 17 O -1.00 -20.25 15.84 -57.17 -0.91 -21.16 16 18 N -1.00 -15.53 3.36 -116.74 -0.39 -15.92 16 19 C 0.12 1.73 6.01 -5.34 -0.03 1.70 16 20 C -0.11 -1.32 6.09 -28.26 -0.17 -1.49 16 21 C -0.12 -1.34 5.91 -92.46 -0.55 -1.89 16 22 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 23 C -0.18 -1.73 9.77 -26.76 -0.26 -2.00 16 24 C -0.16 -1.77 6.36 -90.75 -0.58 -2.35 16 25 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 26 C 0.16 1.98 6.10 -4.59 -0.03 1.95 16 27 H 0.08 1.47 8.08 -51.93 -0.42 1.05 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.33 8.00 -51.93 -0.42 0.92 16 33 H 0.07 1.04 7.29 -51.93 -0.38 0.67 16 34 H 0.03 0.82 7.61 -51.93 -0.40 0.43 16 35 H 0.03 0.84 8.00 -51.93 -0.42 0.43 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.10 1.66 6.78 -51.93 -0.35 1.31 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.92 8.12 -51.93 -0.42 0.50 16 43 H 0.06 0.76 8.12 -51.92 -0.42 0.34 16 44 H 0.08 1.02 6.97 -51.93 -0.36 0.66 16 LS Contribution 359.88 15.07 5.42 5.42 Total: -1.00 -33.28 359.88 -10.19 -43.48 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -7.27 Total: -1.24 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -0.68 Total: -4.68 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: 0.01 Total: -62.38 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -2.03 Total: -52.07 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: 54.94 SS G_CDS: -0.63 Total: 54.31 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.28 -10.19 -43.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595358984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.750 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds