Wall clock time and date at job start Fri Apr 10 2020 18:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00313 * 2 1 4 4 C 1.52997 * 109.47396 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47212 * 64.99584 * 4 3 2 6 6 C 1.46494 * 120.00080 * 275.00347 * 5 4 3 7 7 C 1.50697 * 109.47607 * 84.99862 * 6 5 4 8 8 H 1.08003 * 119.99367 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00325 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99491 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00078 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46861 * 89.99899 * 11 9 7 13 13 H 1.48500 * 109.47003 * 209.99763 * 11 9 7 14 14 H 1.48499 * 109.47122 * 329.99982 * 11 9 7 15 15 S 1.65596 * 119.99655 * 94.99926 * 5 4 3 16 16 O 1.42103 * 106.40201 * 203.53703 * 15 5 4 17 17 O 1.42095 * 106.40562 * 336.46073 * 15 5 4 18 18 N 1.65601 * 107.21751 * 90.00120 * 15 5 4 19 19 C 1.45309 * 118.83137 * 89.99991 * 18 15 5 20 20 C 1.51704 * 112.00648 * 235.87132 * 19 18 15 21 21 C 1.51279 * 112.95358 * 318.23541 * 20 19 18 22 22 H 1.08994 * 114.34237 * 163.72556 * 21 20 19 23 23 C 1.52116 * 120.85096 * 308.62909 * 21 20 19 24 24 C 1.51968 * 120.67391 * 20.74919 * 21 20 19 25 25 H 1.08997 * 117.35535 * 142.22302 * 24 21 20 26 26 C 1.45534 * 118.82760 * 269.72809 * 18 15 5 27 27 H 1.08997 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46799 * 300.00326 * 1 2 3 29 29 H 1.08998 * 109.47187 * 59.99969 * 1 2 3 30 30 H 1.09001 * 109.46993 * 59.99365 * 3 2 1 31 31 H 1.09004 * 109.46505 * 300.00140 * 3 2 1 32 32 H 1.09002 * 109.47153 * 304.99576 * 4 3 2 33 33 H 1.09001 * 109.46832 * 184.99767 * 4 3 2 34 34 H 1.08998 * 109.46996 * 205.00499 * 6 5 4 35 35 H 1.09004 * 109.47165 * 324.99422 * 6 5 4 36 36 H 0.97007 * 119.99732 * 180.02562 * 10 9 7 37 37 H 1.09003 * 108.97347 * 356.51556 * 19 18 15 38 38 H 1.08997 * 108.98115 * 115.30513 * 19 18 15 39 39 H 1.09003 * 108.78869 * 79.13236 * 20 19 18 40 40 H 1.09003 * 108.79172 * 197.33526 * 20 19 18 41 41 H 1.08999 * 117.54114 * 217.65461 * 23 21 20 42 42 H 1.08999 * 117.54128 * 2.91902 * 23 21 20 43 43 H 1.09008 * 109.21518 * 260.83398 * 26 18 15 44 44 H 1.08996 * 109.21768 * 20.15894 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0003 -0.8951 -1.3781 7 6 2.6348 -1.3877 -1.7826 8 1 1.8293 -0.6840 -1.9318 9 6 2.4139 -2.7368 -1.9622 10 7 3.3950 -3.5936 -1.7809 11 14 0.7210 -3.3475 -2.4628 12 1 0.6276 -3.3878 -3.9444 13 1 0.5050 -4.7110 -1.9158 14 1 -0.3152 -2.4289 -1.9263 15 16 4.4453 1.5128 -2.5263 16 8 4.2757 0.7255 -3.6970 17 8 3.8177 2.7740 -2.3402 18 7 6.0733 1.7730 -2.3696 19 6 6.9954 0.8398 -2.9943 20 6 7.9749 0.2536 -1.9952 21 6 8.5054 1.2793 -1.0179 22 1 8.9795 0.8539 -0.1334 23 6 9.0996 2.5906 -1.5091 24 6 7.7517 2.5751 -0.7685 25 1 7.7372 2.9577 0.2520 26 6 6.5294 2.9315 -1.6161 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8515 0.5683 0.8410 33 1 3.9785 2.1765 0.0889 34 1 4.7294 -1.1824 -2.1357 35 1 4.2775 -1.3373 -0.4211 36 1 3.2397 -4.5427 -1.9076 37 1 6.4256 0.0294 -3.4491 38 1 7.5536 1.3602 -3.7724 39 1 7.4753 -0.5379 -1.4366 40 1 8.8142 -0.1799 -2.5391 41 1 9.9641 2.9839 -0.9742 42 1 9.0830 2.7808 -2.5822 43 1 6.7906 3.7306 -2.3099 44 1 5.7269 3.2731 -0.9625 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595358984.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:35 Heat of formation + Delta-G solvation = -105.276448 kcal Electronic energy + Delta-G solvation = -27335.500606 eV Core-core repulsion = 23608.200703 eV Total energy + Delta-G solvation = -3727.299904 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.36047 -38.98151 -38.35740 -36.87669 -36.74894 -35.49040 -34.43203 -32.51900 -30.94854 -28.39083 -27.11629 -26.86022 -25.15194 -24.46484 -23.26218 -22.34258 -20.70832 -19.14985 -18.71605 -18.61871 -18.28875 -17.36603 -16.97019 -16.64376 -16.51856 -16.35204 -15.89366 -15.65112 -15.37771 -15.06637 -14.93431 -14.39013 -14.01191 -13.91986 -13.87102 -13.63091 -13.32817 -13.18657 -12.98393 -12.94821 -12.92454 -12.64819 -12.54359 -12.48925 -12.24132 -12.10461 -11.97469 -11.83358 -11.74046 -11.37805 -10.87301 -10.65566 -10.43003 -10.19542 -9.97061 -9.68495 -8.01476 -6.01200 -0.36067 1.40704 1.43772 1.51816 1.99430 2.49191 2.58682 2.90054 3.09632 3.34799 3.40754 3.65251 3.79209 3.87468 4.02735 4.10072 4.18334 4.27402 4.28307 4.40597 4.49655 4.54388 4.59524 4.63449 4.63938 4.78359 4.83209 4.89536 4.93942 4.95226 5.05041 5.05964 5.14125 5.27675 5.32971 5.36935 5.38208 5.57230 5.72824 5.92371 6.04953 6.33862 6.58548 7.03032 7.60256 9.08054 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016899 B = 0.005452 C = 0.004798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.511186 B = 5134.185611 C = 5834.936415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.370 6.370 3 C 0.036 3.964 4 C 0.131 3.869 5 N -0.991 5.991 6 C 0.283 3.717 7 C -0.483 4.483 8 H 0.064 0.936 9 C 0.003 3.997 10 N -0.939 5.939 11 Si 0.938 3.062 12 H -0.289 1.289 13 H -0.285 1.285 14 H -0.257 1.257 15 S 2.783 3.217 16 O -1.008 7.008 17 O -1.003 7.003 18 N -0.993 5.993 19 C 0.115 3.885 20 C -0.102 4.102 21 C -0.135 4.135 22 H 0.109 0.891 23 C -0.161 4.161 24 C -0.169 4.169 25 H 0.130 0.870 26 C 0.145 3.855 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.029 0.971 30 H 0.081 0.919 31 H 0.030 0.970 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.009 0.991 35 H 0.019 0.981 36 H 0.257 0.743 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.015 13.785 5.555 17.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.288 6.288 3 C -0.043 4.043 4 C 0.006 3.994 5 N -0.831 5.831 6 C 0.159 3.841 7 C -0.523 4.523 8 H 0.082 0.918 9 C -0.193 4.193 10 N -0.583 5.583 11 Si 0.765 3.235 12 H -0.215 1.215 13 H -0.211 1.211 14 H -0.181 1.181 15 S 2.793 3.207 16 O -0.992 6.992 17 O -0.986 6.986 18 N -0.833 5.833 19 C -0.011 4.011 20 C -0.141 4.141 21 C -0.153 4.153 22 H 0.127 0.873 23 C -0.198 4.198 24 C -0.189 4.189 25 H 0.148 0.852 26 C 0.020 3.980 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.027 0.973 35 H 0.037 0.963 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.131 0.869 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.611 13.793 4.853 16.969 hybrid contribution -1.053 -0.888 -0.197 1.392 sum 7.557 12.905 4.656 15.663 Atomic orbital electron populations 1.22725 0.82407 1.01990 0.99805 1.88447 1.18825 1.26635 1.94940 1.23088 0.95211 0.85713 1.00273 1.21378 0.92635 0.98588 0.86845 1.57646 1.79121 1.17568 1.28798 1.18501 0.95925 0.73847 0.95809 1.21791 0.96882 0.91919 1.41718 0.91770 1.25546 0.99733 0.97263 0.96776 1.70027 1.32999 1.02256 1.52970 0.85870 0.82105 0.77715 0.77830 1.21539 1.21098 1.18097 1.01776 0.73532 0.72072 0.73307 1.93556 1.85642 1.71524 1.48440 1.93498 1.75162 1.43007 1.86973 1.57228 1.24246 1.35235 1.66633 1.20808 0.92488 0.92176 0.95610 1.20692 0.98698 0.97635 0.97076 1.21420 1.02912 0.89695 1.01317 0.87313 1.23160 0.96244 0.99719 1.00705 1.22580 0.92544 1.02990 1.00766 0.85191 1.20818 0.97140 0.86004 0.94042 0.91246 0.92181 0.95263 0.90137 0.95186 0.89395 0.87295 0.97275 0.96299 0.93379 0.91296 0.89970 0.92660 0.88723 0.86897 0.88836 0.90335 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 10.90 113.37 1.24 2.18 16 2 O -0.37 -15.29 6.62 -148.98 -0.99 -16.27 16 3 C 0.04 1.22 6.22 71.98 0.45 1.67 16 4 C 0.13 4.34 5.81 86.38 0.50 4.84 16 5 N -0.99 -40.70 2.86 -519.85 -1.48 -42.18 16 6 C 0.28 14.39 5.04 85.63 0.43 14.82 16 7 C -0.48 -27.28 7.22 25.60 0.18 -27.09 16 8 H 0.06 3.65 6.09 -2.91 -0.02 3.63 16 9 C 0.00 0.17 5.46 84.65 0.46 0.63 16 10 N -0.94 -56.79 13.29 21.45 0.28 -56.51 16 11 Si 0.94 46.02 29.54 68.60 2.03 48.04 16 12 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 13 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 14 H -0.26 -11.77 7.04 99.48 0.70 -11.07 16 15 S 2.78 110.94 5.87 -56.49 -0.33 110.61 16 16 O -1.01 -49.66 15.57 -128.00 -1.99 -51.66 16 17 O -1.00 -39.88 15.84 -128.00 -2.03 -41.91 16 18 N -0.99 -30.06 3.36 -523.27 -1.76 -31.82 16 19 C 0.11 3.31 6.01 86.18 0.52 3.83 16 20 C -0.10 -2.48 6.09 29.61 0.18 -2.30 16 21 C -0.13 -2.63 5.91 -11.99 -0.07 -2.71 16 22 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 23 C -0.16 -2.51 9.77 30.57 0.30 -2.21 16 24 C -0.17 -3.10 6.36 -10.88 -0.07 -3.17 16 25 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 26 C 0.14 3.32 6.10 86.54 0.53 3.85 16 27 H 0.07 2.49 8.08 -2.39 -0.02 2.47 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 2.78 8.00 -2.39 -0.02 2.76 16 33 H 0.11 2.79 7.29 -2.39 -0.02 2.77 16 34 H 0.01 0.51 7.61 -2.39 -0.02 0.50 16 35 H 0.02 1.01 8.00 -2.39 -0.02 0.99 16 36 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 37 H 0.07 2.43 6.78 -2.39 -0.02 2.41 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.09 1.50 8.12 -2.39 -0.02 1.48 16 43 H 0.08 1.61 8.12 -2.38 -0.02 1.59 16 44 H 0.09 1.92 6.97 -2.39 -0.02 1.91 16 Total: -1.00 -73.43 359.88 -0.65 -74.08 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.97 Total: 13.26 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 4.65 Total: -5.65 kcal Atomic # 7 Polarization: -127.55 SS G_CDS: -2.96 Total: -130.51 kcal Atomic # 8 Polarization: -104.83 SS G_CDS: -5.01 Total: -109.83 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Atomic # 16 Polarization: 110.94 SS G_CDS: -0.33 Total: 110.61 kcal Total: -73.43 -0.65 -74.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595358984.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.193 kcal (2) G-P(sol) polarization free energy of solvation -73.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds