Wall clock time and date at job start Fri Apr 10 2020 18:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00106 * 2 1 4 4 C 1.52999 * 109.47118 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47508 * 65.00263 * 4 3 2 6 6 C 1.46502 * 119.99642 * 275.00636 * 5 4 3 7 7 C 1.50707 * 109.46676 * 274.98979 * 6 5 4 8 8 H 1.07993 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99767 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00119 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99974 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47109 * 60.00339 * 11 9 7 13 13 H 1.48500 * 109.47165 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47232 * 300.00012 * 11 9 7 15 15 S 1.65594 * 120.00109 * 94.99546 * 5 4 3 16 16 O 1.42102 * 106.40422 * 336.46832 * 15 5 4 17 17 O 1.42099 * 106.40452 * 203.54555 * 15 5 4 18 18 N 1.65600 * 107.21567 * 90.00626 * 15 5 4 19 19 C 1.45308 * 118.81959 * 90.00300 * 18 15 5 20 20 C 1.51718 * 111.93113 * 235.96487 * 19 18 15 21 21 C 1.52094 * 112.48446 * 318.54175 * 20 19 18 22 22 H 1.08996 * 114.90383 * 230.50670 * 21 20 19 23 23 C 1.53816 * 115.92396 * 89.39923 * 21 20 19 24 24 C 1.51966 * 121.26671 * 20.60771 * 21 20 19 25 25 H 1.08993 * 115.77543 * 209.49296 * 24 21 20 26 26 C 1.45523 * 118.81728 * 269.97490 * 18 15 5 27 27 H 1.09003 * 109.47389 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47234 * 299.99727 * 1 2 3 29 29 H 1.09002 * 109.47076 * 59.99835 * 1 2 3 30 30 H 1.09004 * 109.47106 * 60.00243 * 3 2 1 31 31 H 1.08994 * 109.47499 * 300.00269 * 3 2 1 32 32 H 1.09002 * 109.47174 * 305.00307 * 4 3 2 33 33 H 1.09007 * 109.47213 * 185.00433 * 4 3 2 34 34 H 1.08990 * 109.47808 * 34.99128 * 6 5 4 35 35 H 1.09002 * 109.47156 * 154.99566 * 6 5 4 36 36 H 0.97006 * 119.99947 * 179.97438 * 10 9 7 37 37 H 1.09002 * 108.97601 * 356.57022 * 19 18 15 38 38 H 1.09000 * 108.97756 * 115.36128 * 19 18 15 39 39 H 1.08997 * 108.88454 * 79.38017 * 20 19 18 40 40 H 1.09000 * 108.88618 * 197.84918 * 20 19 18 41 41 H 1.08999 * 117.53908 * 140.05142 * 23 21 20 42 42 H 1.08994 * 117.54431 * 354.76617 * 23 21 20 43 43 H 1.09001 * 109.12327 * 260.55580 * 26 18 15 44 44 H 1.09003 * 109.11765 * 19.69551 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0003 -0.8950 -1.3782 7 6 5.2994 -1.4247 -0.8276 8 1 6.0329 -0.7425 -0.4242 9 6 5.5512 -2.7802 -0.8389 10 7 4.6580 -3.6109 -1.3306 11 14 7.1611 -3.4368 -0.1558 12 1 7.2809 -3.0616 1.2760 13 1 7.1866 -4.9160 -0.2842 14 1 8.2957 -2.8547 -0.9167 15 16 4.4454 1.5130 -2.5262 16 8 3.8178 2.7742 -2.3400 17 8 4.2757 0.7258 -3.6970 18 7 6.0733 1.7730 -2.3695 19 6 6.9951 0.8397 -2.9945 20 6 7.9724 0.2525 -1.9935 21 6 8.4920 1.2903 -1.0105 22 1 9.5765 1.3203 -0.9052 23 6 7.6653 1.4734 0.2736 24 6 7.7393 2.5866 -0.7607 25 1 8.3511 3.4430 -0.4779 26 6 6.5293 2.9284 -1.6114 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8514 0.5681 0.8409 33 1 3.9786 2.1765 0.0890 34 1 3.1678 -1.3219 -0.8191 35 1 3.9117 -1.1709 -2.4290 36 1 4.8354 -4.5645 -1.3389 37 1 6.4251 0.0300 -3.4501 38 1 7.5540 1.3604 -3.7719 39 1 7.4741 -0.5421 -1.4383 40 1 8.8176 -0.1738 -2.5340 41 1 8.2094 1.6161 1.2072 42 1 6.7291 0.9210 0.3534 43 1 6.7939 3.7279 -2.3035 44 1 5.7230 3.2705 -0.9625 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595358985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:39 Heat of formation + Delta-G solvation = -89.724787 kcal Electronic energy + Delta-G solvation = -27762.685400 eV Core-core repulsion = 24036.059867 eV Total energy + Delta-G solvation = -3726.625533 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.10524 -37.70734 -36.71696 -35.30465 -35.19749 -34.16940 -32.56026 -31.18883 -29.45037 -26.72376 -25.97017 -25.61742 -23.66305 -22.80333 -21.73700 -21.16236 -19.18514 -17.76156 -17.36136 -16.95868 -16.36301 -16.04967 -15.76526 -15.46908 -15.41641 -14.75255 -14.42554 -14.30932 -13.80757 -13.47664 -13.45794 -12.76866 -12.54070 -12.49547 -12.26581 -12.02054 -11.86600 -11.69729 -11.61043 -11.53781 -11.36767 -11.18065 -11.04046 -10.92740 -10.85840 -10.58631 -10.37679 -10.31068 -9.96292 -9.78079 -9.65259 -9.32881 -9.25656 -8.55759 -8.39360 -7.92518 -6.02918 -4.07964 1.27586 3.27947 3.33923 3.35066 3.47382 3.97270 4.12039 4.19887 4.40621 4.81535 4.92610 5.09175 5.16258 5.28147 5.30982 5.43519 5.44541 5.46683 5.58046 5.60834 5.65642 5.68374 5.71742 5.79916 5.89588 5.96649 5.99941 6.05936 6.13288 6.24901 6.34244 6.42780 6.51169 6.57624 6.67628 6.90710 7.10625 7.56300 7.58044 7.60203 7.82489 7.97387 8.27618 8.96815 9.55631 11.05032 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010015 B = 0.008627 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.097972 B = 3244.750337 C = 4859.678870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.044 3.956 4 C 0.137 3.863 5 N -0.984 5.984 6 C 0.245 3.755 7 C -0.538 4.538 8 H 0.069 0.931 9 C 0.067 3.933 10 N -0.887 5.887 11 Si 0.882 3.118 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.272 1.272 15 S 2.777 3.223 16 O -1.002 7.002 17 O -0.976 6.976 18 N -0.994 5.994 19 C 0.133 3.867 20 C -0.123 4.123 21 C -0.133 4.133 22 H 0.094 0.906 23 C -0.181 4.181 24 C -0.158 4.158 25 H 0.102 0.898 26 C 0.160 3.840 27 H 0.083 0.917 28 H 0.033 0.967 29 H 0.035 0.965 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.099 0.901 38 H 0.053 0.947 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.064 0.936 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.966 11.146 2.861 11.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C -0.035 4.035 4 C 0.009 3.991 5 N -0.825 5.825 6 C 0.124 3.876 7 C -0.577 4.577 8 H 0.087 0.913 9 C -0.136 4.136 10 N -0.525 5.525 11 Si 0.709 3.291 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.198 1.198 15 S 2.787 3.213 16 O -0.986 6.986 17 O -0.960 6.960 18 N -0.832 5.832 19 C 0.007 3.993 20 C -0.161 4.161 21 C -0.152 4.152 22 H 0.113 0.887 23 C -0.218 4.218 24 C -0.178 4.178 25 H 0.120 0.880 26 C 0.034 3.966 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.122 0.878 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.128 0.872 43 H 0.082 0.918 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.503 11.099 2.099 11.395 hybrid contribution 1.086 -0.406 0.869 1.449 sum 2.590 10.693 2.967 11.395 Atomic orbital electron populations 1.22701 0.82394 1.02435 0.99082 1.88103 1.18410 1.27015 1.95144 1.23098 0.95445 0.85178 0.99804 1.21069 0.91306 0.97575 0.89120 1.57696 1.78447 1.19491 1.26866 1.19279 0.98127 0.71411 0.98814 1.21661 1.02843 0.92079 1.41141 0.91306 1.24893 0.96458 0.96927 0.95307 1.69934 1.34300 1.03179 1.45063 0.86842 0.84478 0.78000 0.79734 1.20279 1.21462 1.19771 1.02075 0.72733 0.72463 0.74055 1.93518 1.74607 1.43235 1.87204 1.93568 1.85017 1.70759 1.46621 1.57317 1.25660 1.34416 1.65813 1.20567 0.92456 0.92183 0.94070 1.21267 0.98933 0.98358 0.97549 1.21863 0.96973 0.97491 0.98882 0.88741 1.23243 1.03452 1.02418 0.92679 1.21923 1.00096 0.93337 1.02401 0.88022 1.20105 0.96010 0.87117 0.93388 0.89849 0.94814 0.94641 0.93229 0.93341 0.89183 0.90515 0.92580 0.93752 0.92737 0.88315 0.92841 0.87790 0.91498 0.89442 0.87215 0.91819 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.37 -6.78 9.02 -35.23 -0.32 -7.10 16 3 C 0.04 0.71 6.28 37.16 0.23 0.94 16 4 C 0.14 2.33 5.79 -4.04 -0.02 2.31 16 5 N -0.98 -19.98 2.81 -115.66 -0.33 -20.30 16 6 C 0.25 6.00 5.27 -5.19 -0.03 5.97 16 7 C -0.54 -13.35 8.40 -34.44 -0.29 -13.64 16 8 H 0.07 1.60 4.41 -52.49 -0.23 1.37 16 9 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -25.04 13.29 55.43 0.74 -24.31 16 11 Si 0.88 20.18 28.99 -169.99 -4.93 15.25 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 15 S 2.78 55.50 5.92 -107.50 -0.64 54.86 16 16 O -1.00 -20.05 15.84 -57.17 -0.91 -20.96 16 17 O -0.98 -22.83 15.15 -57.17 -0.87 -23.69 16 18 N -0.99 -16.98 3.32 -117.39 -0.39 -17.37 16 19 C 0.13 2.27 6.26 -5.33 -0.03 2.24 16 20 C -0.12 -2.03 5.97 -27.84 -0.17 -2.20 16 21 C -0.13 -1.91 6.17 -91.18 -0.56 -2.47 16 22 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 23 C -0.18 -2.59 9.94 -26.75 -0.27 -2.86 16 24 C -0.16 -2.05 5.99 -92.19 -0.55 -2.60 16 25 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 26 C 0.16 2.26 6.20 -5.17 -0.03 2.23 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.56 8.11 -51.93 -0.42 1.14 16 33 H 0.08 1.11 7.28 -51.92 -0.38 0.74 16 34 H 0.06 1.49 6.60 -51.93 -0.34 1.14 16 35 H 0.04 1.22 6.91 -51.93 -0.36 0.86 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.10 1.92 6.78 -51.93 -0.35 1.57 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.10 2.04 4.43 -51.93 -0.23 1.81 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.11 1.83 6.50 -51.93 -0.34 1.50 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.09 6.94 -51.93 -0.36 0.73 16 LS Contribution 354.23 15.07 5.34 5.34 Total: -1.00 -30.73 354.23 -9.80 -40.52 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.80 Total: 4.61 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -0.70 Total: -6.85 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 0.02 Total: -61.98 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -2.09 Total: -51.75 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.93 Total: 15.25 kcal Atomic # 16 Polarization: 55.50 SS G_CDS: -0.64 Total: 54.86 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.73 -9.80 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595358985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.204 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds