Wall clock time and date at job start Fri Apr 10 2020 18:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00106 * 2 1 4 4 C 1.52999 * 109.47118 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47508 * 65.00263 * 4 3 2 6 6 C 1.46502 * 119.99642 * 275.00636 * 5 4 3 7 7 C 1.50707 * 109.46676 * 274.98979 * 6 5 4 8 8 H 1.07993 * 119.99988 * 0.02562 * 7 6 5 9 9 C 1.37872 * 119.99767 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00119 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99974 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47109 * 60.00339 * 11 9 7 13 13 H 1.48500 * 109.47165 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47232 * 300.00012 * 11 9 7 15 15 S 1.65594 * 120.00109 * 94.99546 * 5 4 3 16 16 O 1.42102 * 106.40422 * 336.46832 * 15 5 4 17 17 O 1.42099 * 106.40452 * 203.54555 * 15 5 4 18 18 N 1.65600 * 107.21567 * 90.00626 * 15 5 4 19 19 C 1.45308 * 118.81959 * 90.00300 * 18 15 5 20 20 C 1.51718 * 111.93113 * 235.96487 * 19 18 15 21 21 C 1.52094 * 112.48446 * 318.54175 * 20 19 18 22 22 H 1.08996 * 114.90383 * 230.50670 * 21 20 19 23 23 C 1.53816 * 115.92396 * 89.39923 * 21 20 19 24 24 C 1.51966 * 121.26671 * 20.60771 * 21 20 19 25 25 H 1.08993 * 115.77543 * 209.49296 * 24 21 20 26 26 C 1.45523 * 118.81728 * 269.97490 * 18 15 5 27 27 H 1.09003 * 109.47389 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47234 * 299.99727 * 1 2 3 29 29 H 1.09002 * 109.47076 * 59.99835 * 1 2 3 30 30 H 1.09004 * 109.47106 * 60.00243 * 3 2 1 31 31 H 1.08994 * 109.47499 * 300.00269 * 3 2 1 32 32 H 1.09002 * 109.47174 * 305.00307 * 4 3 2 33 33 H 1.09007 * 109.47213 * 185.00433 * 4 3 2 34 34 H 1.08990 * 109.47808 * 34.99128 * 6 5 4 35 35 H 1.09002 * 109.47156 * 154.99566 * 6 5 4 36 36 H 0.97006 * 119.99947 * 179.97438 * 10 9 7 37 37 H 1.09002 * 108.97601 * 356.57022 * 19 18 15 38 38 H 1.09000 * 108.97756 * 115.36128 * 19 18 15 39 39 H 1.08997 * 108.88454 * 79.38017 * 20 19 18 40 40 H 1.09000 * 108.88618 * 197.84918 * 20 19 18 41 41 H 1.08999 * 117.53908 * 140.05142 * 23 21 20 42 42 H 1.08994 * 117.54431 * 354.76617 * 23 21 20 43 43 H 1.09001 * 109.12327 * 260.55580 * 26 18 15 44 44 H 1.09003 * 109.11765 * 19.69551 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0003 -0.8950 -1.3782 7 6 5.2994 -1.4247 -0.8276 8 1 6.0329 -0.7425 -0.4242 9 6 5.5512 -2.7802 -0.8389 10 7 4.6580 -3.6109 -1.3306 11 14 7.1611 -3.4368 -0.1558 12 1 7.2809 -3.0616 1.2760 13 1 7.1866 -4.9160 -0.2842 14 1 8.2957 -2.8547 -0.9167 15 16 4.4454 1.5130 -2.5262 16 8 3.8178 2.7742 -2.3400 17 8 4.2757 0.7258 -3.6970 18 7 6.0733 1.7730 -2.3695 19 6 6.9951 0.8397 -2.9945 20 6 7.9724 0.2525 -1.9935 21 6 8.4920 1.2903 -1.0105 22 1 9.5765 1.3203 -0.9052 23 6 7.6653 1.4734 0.2736 24 6 7.7393 2.5866 -0.7607 25 1 8.3511 3.4430 -0.4779 26 6 6.5293 2.9284 -1.6114 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8514 0.5681 0.8409 33 1 3.9786 2.1765 0.0890 34 1 3.1678 -1.3219 -0.8191 35 1 3.9117 -1.1709 -2.4290 36 1 4.8354 -4.5645 -1.3389 37 1 6.4251 0.0300 -3.4501 38 1 7.5540 1.3604 -3.7719 39 1 7.4741 -0.5421 -1.4383 40 1 8.8176 -0.1738 -2.5340 41 1 8.2094 1.6161 1.2072 42 1 6.7291 0.9210 0.3534 43 1 6.7939 3.7279 -2.3035 44 1 5.7230 3.2705 -0.9625 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595358985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:38 Heat of formation + Delta-G solvation = -111.155905 kcal Electronic energy + Delta-G solvation = -27763.614723 eV Core-core repulsion = 24036.059867 eV Total energy + Delta-G solvation = -3727.554856 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.27731 -39.06593 -38.38485 -36.94294 -36.86932 -35.42545 -34.49419 -32.45149 -31.00416 -28.42714 -27.17650 -26.96976 -25.01957 -24.46456 -23.27557 -22.28185 -20.60866 -19.17003 -18.82001 -18.49185 -18.25245 -17.54947 -17.11351 -16.78861 -16.58163 -16.42908 -15.86967 -15.77285 -15.13913 -15.02711 -14.67057 -14.42414 -14.01411 -13.89511 -13.75926 -13.50339 -13.37870 -13.24653 -13.05638 -13.03367 -12.84619 -12.72615 -12.70270 -12.46363 -12.24268 -12.12550 -11.96052 -11.90920 -11.58766 -11.32815 -10.75837 -10.60899 -10.55632 -10.43947 -9.89600 -9.58395 -8.05946 -6.16504 -0.30843 1.45822 1.46530 1.52968 1.96259 2.47313 2.56092 2.90365 2.98747 3.26688 3.37821 3.63817 3.96103 4.02776 4.07846 4.13541 4.21596 4.29633 4.37762 4.43588 4.45901 4.48798 4.54856 4.58196 4.70101 4.83081 4.86802 4.93762 4.96352 4.98497 5.06625 5.09547 5.22019 5.36366 5.41399 5.52671 5.62967 5.63455 5.81152 5.91624 6.05926 6.26475 6.39639 6.96739 7.51196 9.02506 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010015 B = 0.008627 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.097972 B = 3244.750337 C = 4859.678870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.041 3.959 4 C 0.129 3.871 5 N -0.988 5.988 6 C 0.267 3.733 7 C -0.527 4.527 8 H 0.086 0.914 9 C 0.013 3.987 10 N -0.931 5.931 11 Si 0.941 3.059 12 H -0.269 1.269 13 H -0.297 1.297 14 H -0.256 1.256 15 S 2.786 3.214 16 O -1.001 7.001 17 O -1.017 7.017 18 N -0.989 5.989 19 C 0.131 3.869 20 C -0.123 4.123 21 C -0.140 4.140 22 H 0.118 0.882 23 C -0.191 4.191 24 C -0.138 4.138 25 H 0.138 0.862 26 C 0.145 3.855 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.030 0.970 35 H 0.004 0.996 36 H 0.260 0.740 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.101 13.721 4.366 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.037 4.037 4 C 0.003 3.997 5 N -0.828 5.828 6 C 0.143 3.857 7 C -0.566 4.566 8 H 0.104 0.896 9 C -0.185 4.185 10 N -0.572 5.572 11 Si 0.767 3.233 12 H -0.194 1.194 13 H -0.223 1.223 14 H -0.180 1.180 15 S 2.796 3.204 16 O -0.985 6.985 17 O -1.001 7.001 18 N -0.829 5.829 19 C 0.005 3.995 20 C -0.161 4.161 21 C -0.159 4.159 22 H 0.136 0.864 23 C -0.228 4.228 24 C -0.158 4.158 25 H 0.155 0.845 26 C 0.021 3.979 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.125 0.875 34 H 0.048 0.952 35 H 0.022 0.978 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.126 0.874 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.629 13.717 3.623 14.644 hybrid contribution 0.365 -1.121 0.383 1.240 sum 3.993 12.595 4.007 13.808 Atomic orbital electron populations 1.22880 0.80481 1.03128 1.00640 1.88052 1.20748 1.28463 1.95447 1.23186 0.94682 0.84744 1.01128 1.21362 0.92398 0.98603 0.87355 1.57561 1.79294 1.17661 1.28296 1.18709 0.97302 0.73902 0.95767 1.21965 1.02878 0.92238 1.39489 0.89627 1.25691 0.99549 0.97447 0.95842 1.70096 1.36555 1.03242 1.47266 0.85871 0.81169 0.76754 0.79505 1.19400 1.22295 1.17993 1.01630 0.73537 0.71978 0.73252 1.93507 1.75215 1.42660 1.87078 1.93514 1.86008 1.71828 1.48784 1.57093 1.24244 1.35290 1.66261 1.20585 0.92211 0.91696 0.95021 1.21197 0.98873 0.98342 0.97717 1.21910 0.98241 0.97723 0.98015 0.86385 1.23215 1.02495 1.03213 0.93835 1.21997 0.99277 0.93841 1.00667 0.84472 1.20510 0.96996 0.86341 0.94087 0.89752 0.92039 0.94169 0.89522 0.94160 0.89709 0.87508 0.95166 0.97783 0.93112 0.91772 0.90131 0.91230 0.90020 0.87418 0.90162 0.89421 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 11.01 113.37 1.25 1.94 16 2 O -0.41 -15.22 9.02 -148.98 -1.34 -16.56 16 3 C 0.04 1.30 6.28 71.98 0.45 1.75 16 4 C 0.13 4.33 5.79 86.38 0.50 4.83 16 5 N -0.99 -40.92 2.81 -519.83 -1.46 -42.38 16 6 C 0.27 13.71 5.27 85.63 0.45 14.16 16 7 C -0.53 -26.86 8.40 25.60 0.22 -26.65 16 8 H 0.09 4.02 4.41 -2.91 -0.01 4.01 16 9 C 0.01 0.72 5.46 84.65 0.46 1.19 16 10 N -0.93 -54.92 13.29 21.45 0.28 -54.64 16 11 Si 0.94 41.85 28.99 68.60 1.99 43.84 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 14 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 15 S 2.79 111.97 5.92 -56.49 -0.33 111.64 16 16 O -1.00 -38.99 15.84 -128.00 -2.03 -41.02 16 17 O -1.02 -49.63 15.15 -128.00 -1.94 -51.57 16 18 N -0.99 -32.45 3.32 -525.31 -1.75 -34.20 16 19 C 0.13 4.35 6.26 86.18 0.54 4.89 16 20 C -0.12 -3.84 5.97 29.87 0.18 -3.67 16 21 C -0.14 -3.51 6.17 -11.16 -0.07 -3.57 16 22 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 23 C -0.19 -4.83 9.94 30.58 0.30 -4.53 16 24 C -0.14 -2.98 5.99 -11.81 -0.07 -3.05 16 25 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 26 C 0.15 3.62 6.20 86.17 0.53 4.15 16 27 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.04 1.05 8.14 -2.39 -0.02 1.04 16 30 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 2.93 8.11 -2.39 -0.02 2.91 16 33 H 0.11 2.88 7.28 -2.38 -0.02 2.86 16 34 H 0.03 1.70 6.60 -2.39 -0.02 1.69 16 35 H 0.00 0.24 6.91 -2.39 -0.02 0.23 16 36 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 37 H 0.06 2.59 6.78 -2.39 -0.02 2.57 16 38 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 39 H 0.07 2.68 4.43 -2.39 -0.01 2.67 16 40 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.08 2.54 6.50 -2.39 -0.02 2.53 16 43 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.09 2.06 6.94 -2.39 -0.02 2.05 16 Total: -1.00 -69.60 354.23 -0.84 -70.44 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 1.00 Total: 23.01 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 4.75 Total: -8.56 kcal Atomic # 7 Polarization: -128.29 SS G_CDS: -2.92 Total: -131.21 kcal Atomic # 8 Polarization: -103.84 SS G_CDS: -5.31 Total: -109.15 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.99 Total: 43.84 kcal Atomic # 16 Polarization: 111.97 SS G_CDS: -0.33 Total: 111.64 kcal Total: -69.60 -0.84 -70.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595358985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.718 kcal (2) G-P(sol) polarization free energy of solvation -69.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds