Wall clock time and date at job start Fri Apr 10 2020 18:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34226 * 116.99741 * 2 1 4 4 O 1.20829 * 120.00456 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99991 * 180.02562 * 3 2 1 6 6 H 1.08989 * 109.39530 * 59.80187 * 5 3 2 7 7 C 1.52886 * 109.38922 * 179.51581 * 5 3 2 8 8 N 1.47160 * 108.50915 * 170.57765 * 7 5 3 9 9 C 1.46906 * 110.99830 * 165.32769 * 8 7 5 10 10 C 1.50706 * 109.46929 * 189.06604 * 9 8 7 11 11 O 1.21290 * 119.99857 * 359.97438 * 10 9 8 12 12 N 1.34768 * 119.99753 * 179.97438 * 10 9 8 13 13 C 1.37101 * 120.00038 * 179.97438 * 12 10 9 14 14 H 1.08001 * 119.99491 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00236 * 180.02562 * 13 12 10 16 16 N 1.31415 * 119.99936 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00013 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47337 * 59.99183 * 17 15 13 19 19 H 1.48496 * 109.46923 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47051 * 299.99409 * 17 15 13 21 21 C 1.46619 * 110.27419 * 288.76362 * 8 7 5 22 22 C 1.50619 * 110.50686 * 52.47181 * 21 8 7 23 23 C 1.38731 * 118.43213 * 162.51754 * 22 21 8 24 24 C 1.38010 * 120.38308 * 179.76313 * 23 22 21 25 25 C 1.38268 * 119.87056 * 0.02562 * 24 23 22 26 26 C 1.38038 * 119.82130 * 0.08120 * 25 24 23 27 27 C 1.37832 * 121.84854 * 342.45940 * 22 21 8 28 28 H 1.08998 * 109.46912 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46943 * 299.99870 * 1 2 3 30 30 H 1.09003 * 109.46807 * 60.00124 * 1 2 3 31 31 H 1.08997 * 109.62416 * 50.87840 * 7 5 3 32 32 H 1.08995 * 109.63803 * 290.28954 * 7 5 3 33 33 H 1.08998 * 109.47121 * 309.06270 * 9 8 7 34 34 H 1.09000 * 109.47141 * 69.06469 * 9 8 7 35 35 H 0.97005 * 120.00524 * 0.02562 * 12 10 9 36 36 H 0.96994 * 119.99987 * 179.97438 * 16 15 13 37 37 H 1.08996 * 109.26996 * 172.73583 * 21 8 7 38 38 H 1.09000 * 109.27567 * 292.20975 * 21 8 7 39 39 H 1.08007 * 119.81194 * 359.80693 * 23 22 21 40 40 H 1.08001 * 120.07044 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.09064 * 180.11397 * 25 24 23 42 42 H 1.08002 * 119.82269 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9545 0.7777 -0.8894 7 6 3.9977 2.7416 -0.0126 8 7 5.4502 2.8033 0.2154 9 6 5.9807 4.1302 -0.1255 10 6 7.4869 4.0921 -0.0944 11 8 8.0619 3.0612 0.1848 12 7 8.1950 5.2035 -0.3767 13 6 9.5653 5.1690 -0.3479 14 1 10.0772 4.2511 -0.0993 15 6 10.2954 6.3150 -0.6384 16 7 9.6724 7.4318 -0.9414 17 14 12.1624 6.2678 -0.5999 18 1 12.6528 5.2705 -1.5848 19 1 12.6986 7.6089 -0.9450 20 1 12.6199 5.8864 0.7604 21 6 5.7616 2.4540 1.6049 22 6 5.1283 1.1378 1.9727 23 6 5.5988 0.4687 3.0932 24 6 5.0443 -0.7377 3.4698 25 6 4.0143 -1.2841 2.7266 26 6 3.5466 -0.6207 1.6101 27 6 4.1037 0.5911 1.2304 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.4794 3.2821 0.7794 32 1 3.7596 3.1855 -0.9792 33 1 5.6449 4.4102 -1.1239 34 1 5.6207 4.8621 0.5975 35 1 7.7352 6.0280 -0.5996 36 1 10.1821 8.2318 -1.1438 37 1 6.8425 2.3786 1.7232 38 1 5.3815 3.2331 2.2656 39 1 6.4031 0.8947 3.6747 40 1 5.4148 -1.2545 4.3428 41 1 3.5766 -2.2271 3.0191 42 1 2.7417 -1.0473 1.0298 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599667414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:44 Heat of formation + Delta-G solvation = -80.301437 kcal Electronic energy + Delta-G solvation = -26533.144168 eV Core-core repulsion = 22671.483311 eV Total energy + Delta-G solvation = -3861.660857 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.16316 -39.66846 -38.36080 -37.03561 -36.29174 -33.98085 -33.23548 -31.70106 -31.14889 -29.45620 -28.18969 -27.35195 -25.08164 -24.44368 -22.81537 -22.48528 -21.20387 -19.50866 -19.16711 -17.97692 -17.83955 -17.09769 -16.84682 -16.19826 -15.84559 -15.75930 -15.38874 -14.63733 -14.36938 -14.21024 -13.98333 -13.88415 -13.66950 -13.40438 -13.23304 -12.95032 -12.78485 -12.53763 -12.38696 -12.06022 -11.97923 -11.52555 -11.47490 -11.37060 -11.07665 -10.97387 -10.78794 -10.67660 -10.60129 -10.43979 -10.21521 -9.48364 -8.78918 -8.60853 -8.50442 -7.99675 -7.87063 -6.41885 -3.82800 1.29583 1.42019 2.01528 2.44923 3.19990 3.26031 3.30184 3.76109 3.87620 3.94006 4.22368 4.38114 4.53452 4.81710 4.84389 4.88143 4.92320 5.00593 5.07678 5.15868 5.22958 5.24904 5.28319 5.44591 5.56783 5.58154 5.70432 5.75049 5.84136 5.88893 5.95432 6.05610 6.15693 6.23760 6.27862 6.46262 6.52801 6.64390 7.01188 7.19123 7.22598 7.52923 7.54984 8.05517 8.61071 9.17565 9.53650 10.05146 10.75735 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020197 B = 0.003048 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.035127 B = 9185.591102 C =10302.089505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.354 6.354 3 C 0.475 3.525 4 O -0.503 6.503 5 C -0.031 4.031 6 H 0.128 0.872 7 C 0.065 3.935 8 N -0.508 5.508 9 C 0.046 3.954 10 C 0.443 3.557 11 O -0.577 6.577 12 N -0.562 5.562 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.023 3.977 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.081 3.919 22 C -0.047 4.047 23 C -0.118 4.118 24 C -0.114 4.114 25 C -0.130 4.130 26 C -0.117 4.117 27 C -0.082 4.082 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.123 0.877 38 H 0.043 0.957 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.939 -13.229 4.592 21.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.271 6.271 3 C 0.317 3.683 4 O -0.389 6.389 5 C -0.050 4.050 6 H 0.146 0.854 7 C -0.063 4.063 8 N -0.232 5.232 9 C -0.085 4.085 10 C 0.228 3.772 11 O -0.461 6.461 12 N -0.199 5.199 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.758 3.242 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.046 4.046 22 C -0.048 4.048 23 C -0.136 4.136 24 C -0.132 4.132 25 C -0.148 4.148 26 C -0.134 4.134 27 C -0.082 4.082 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.226 0.774 36 H 0.082 0.918 37 H 0.141 0.859 38 H 0.061 0.939 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.463 -13.753 4.409 21.900 hybrid contribution 0.032 1.190 0.310 1.231 sum -16.431 -12.563 4.719 21.215 Atomic orbital electron populations 1.23291 0.76605 1.03678 1.02617 1.86535 1.23245 1.33263 1.84023 1.23604 0.91548 0.81357 0.71779 1.90670 1.67008 1.36242 1.45020 1.19931 0.86095 0.99065 0.99892 0.85406 1.21981 0.88834 0.92621 1.02874 1.61759 1.10254 1.28194 1.22949 1.21912 0.95778 0.88868 1.01943 1.19672 0.87766 0.84946 0.84769 1.90484 1.71187 1.31074 1.53400 1.41849 1.07020 1.10409 1.60609 1.19649 0.81000 0.97924 1.44309 0.87917 1.25260 1.00689 0.94830 0.97107 1.69604 1.36726 1.00934 1.47020 0.85922 0.82172 0.77212 0.78943 1.19873 1.20999 1.19918 1.21314 1.03584 0.92077 0.87599 1.19672 0.94456 0.96441 0.94208 1.21063 1.00277 0.95462 0.96809 1.21099 0.96593 0.95750 0.99758 1.21027 0.97803 1.00044 0.95954 1.21523 1.00305 0.94316 0.97287 1.19013 0.97637 0.95825 0.95758 0.88076 0.91898 0.91825 0.93172 0.89294 0.88817 0.93010 0.77441 0.91801 0.85890 0.93871 0.85643 0.86073 0.86180 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.35 -3.65 7.67 -39.25 -0.30 -3.95 16 3 C 0.47 5.94 7.06 36.01 0.25 6.19 16 4 O -0.50 -7.36 15.57 -18.75 -0.29 -7.65 16 5 C -0.03 -0.40 2.92 -92.97 -0.27 -0.67 16 6 H 0.13 1.55 8.14 -51.94 -0.42 1.13 16 7 C 0.07 0.92 4.29 -3.74 -0.02 0.91 16 8 N -0.51 -8.55 4.42 -237.66 -1.05 -9.60 16 9 C 0.05 0.81 5.44 -4.97 -0.03 0.78 16 10 C 0.44 10.22 7.53 -10.99 -0.08 10.13 16 11 O -0.58 -15.12 13.87 5.55 0.08 -15.04 16 12 N -0.56 -14.01 5.29 -10.96 -0.06 -14.07 16 13 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 14 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 15 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 17 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 C 0.08 1.35 4.83 -5.17 -0.02 1.33 16 22 C -0.05 -0.71 5.79 -104.63 -0.61 -1.31 16 23 C -0.12 -1.57 9.65 -39.48 -0.38 -1.95 16 24 C -0.11 -1.30 10.05 -39.65 -0.40 -1.70 16 25 C -0.13 -1.42 10.05 -39.64 -0.40 -1.82 16 26 C -0.12 -1.40 9.00 -39.49 -0.36 -1.75 16 27 C -0.08 -1.13 5.44 -104.60 -0.57 -1.70 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 30 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 31 H 0.05 0.73 7.70 -51.93 -0.40 0.33 16 32 H 0.09 1.16 7.87 -51.93 -0.41 0.75 16 33 H 0.09 1.48 7.91 -51.93 -0.41 1.07 16 34 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 35 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 36 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.12 2.41 5.92 -51.93 -0.31 2.10 16 38 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 39 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.14 1.46 5.34 -52.49 -0.28 1.18 16 LS Contribution 349.51 15.07 5.27 5.27 Total: -1.00 -32.10 349.51 -8.15 -40.25 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.44 Total: 10.67 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -2.05 Total: 1.89 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -0.38 Total: -47.31 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.52 Total: -26.65 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.10 -8.15 -40.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599667414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.053 kcal (2) G-P(sol) polarization free energy of solvation -32.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds