Wall clock time and date at job start Fri Apr 10 2020 18:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45210 * 1 3 3 C 1.34226 * 116.99741 * 2 1 4 4 O 1.20829 * 120.00456 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99991 * 180.02562 * 3 2 1 6 6 H 1.08989 * 109.39530 * 59.80187 * 5 3 2 7 7 C 1.52886 * 109.38922 * 179.51581 * 5 3 2 8 8 N 1.47160 * 108.50915 * 170.57765 * 7 5 3 9 9 C 1.46906 * 110.99830 * 165.32769 * 8 7 5 10 10 C 1.50706 * 109.46929 * 189.06604 * 9 8 7 11 11 O 1.21290 * 119.99857 * 359.97438 * 10 9 8 12 12 N 1.34768 * 119.99753 * 179.97438 * 10 9 8 13 13 C 1.37101 * 120.00038 * 179.97438 * 12 10 9 14 14 H 1.08001 * 119.99491 * 0.02562 * 13 12 10 15 15 C 1.38950 * 120.00236 * 180.02562 * 13 12 10 16 16 N 1.31415 * 119.99936 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00013 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47337 * 59.99183 * 17 15 13 19 19 H 1.48496 * 109.46923 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47051 * 299.99409 * 17 15 13 21 21 C 1.46619 * 110.27419 * 288.76362 * 8 7 5 22 22 C 1.50619 * 110.50686 * 52.47181 * 21 8 7 23 23 C 1.38731 * 118.43213 * 162.51754 * 22 21 8 24 24 C 1.38010 * 120.38308 * 179.76313 * 23 22 21 25 25 C 1.38268 * 119.87056 * 0.02562 * 24 23 22 26 26 C 1.38038 * 119.82130 * 0.08120 * 25 24 23 27 27 C 1.37832 * 121.84854 * 342.45940 * 22 21 8 28 28 H 1.08998 * 109.46912 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46943 * 299.99870 * 1 2 3 30 30 H 1.09003 * 109.46807 * 60.00124 * 1 2 3 31 31 H 1.08997 * 109.62416 * 50.87840 * 7 5 3 32 32 H 1.08995 * 109.63803 * 290.28954 * 7 5 3 33 33 H 1.08998 * 109.47121 * 309.06270 * 9 8 7 34 34 H 1.09000 * 109.47141 * 69.06469 * 9 8 7 35 35 H 0.97005 * 120.00524 * 0.02562 * 12 10 9 36 36 H 0.96994 * 119.99987 * 179.97438 * 16 15 13 37 37 H 1.08996 * 109.26996 * 172.73583 * 21 8 7 38 38 H 1.09000 * 109.27567 * 292.20975 * 21 8 7 39 39 H 1.08007 * 119.81194 * 359.80693 * 23 22 21 40 40 H 1.08001 * 120.07044 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.09064 * 180.11397 * 25 24 23 42 42 H 1.08002 * 119.82269 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 1 3.9545 0.7777 -0.8894 7 6 3.9977 2.7416 -0.0126 8 7 5.4502 2.8033 0.2154 9 6 5.9807 4.1302 -0.1255 10 6 7.4869 4.0921 -0.0944 11 8 8.0619 3.0612 0.1848 12 7 8.1950 5.2035 -0.3767 13 6 9.5653 5.1690 -0.3479 14 1 10.0772 4.2511 -0.0993 15 6 10.2954 6.3150 -0.6384 16 7 9.6724 7.4318 -0.9414 17 14 12.1624 6.2678 -0.5999 18 1 12.6528 5.2705 -1.5848 19 1 12.6986 7.6089 -0.9450 20 1 12.6199 5.8864 0.7604 21 6 5.7616 2.4540 1.6049 22 6 5.1283 1.1378 1.9727 23 6 5.5988 0.4687 3.0932 24 6 5.0443 -0.7377 3.4698 25 6 4.0143 -1.2841 2.7266 26 6 3.5466 -0.6207 1.6101 27 6 4.1037 0.5911 1.2304 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.4794 3.2821 0.7794 32 1 3.7596 3.1855 -0.9792 33 1 5.6449 4.4102 -1.1239 34 1 5.6207 4.8621 0.5975 35 1 7.7352 6.0280 -0.5996 36 1 10.1821 8.2318 -1.1438 37 1 6.8425 2.3786 1.7232 38 1 5.3815 3.2331 2.2656 39 1 6.4031 0.8947 3.6747 40 1 5.4148 -1.2545 4.3428 41 1 3.5766 -2.2271 3.0191 42 1 2.7417 -1.0473 1.0298 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599667414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:43 Heat of formation + Delta-G solvation = -101.195987 kcal Electronic energy + Delta-G solvation = -26534.050224 eV Core-core repulsion = 22671.483311 eV Total energy + Delta-G solvation = -3862.566913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.14996 -40.78367 -39.97002 -38.14568 -37.41282 -35.91216 -34.37827 -33.32151 -32.64406 -30.47351 -29.18352 -28.53067 -26.65695 -25.78347 -24.01769 -23.48820 -22.18947 -21.04387 -20.50169 -19.85886 -18.89712 -18.04942 -17.81988 -17.69884 -17.05165 -16.79686 -16.66751 -16.31053 -15.76528 -15.73298 -15.45219 -15.01768 -14.77478 -14.56119 -14.40264 -14.19135 -13.84010 -13.67982 -13.47692 -13.40962 -13.16625 -13.02827 -12.97904 -12.63750 -12.48958 -12.41231 -12.12247 -11.95750 -11.71464 -11.66221 -11.62682 -11.44789 -10.31167 -9.99767 -9.78283 -9.62243 -9.26261 -8.45203 -5.93718 0.33636 0.44605 1.05743 1.40392 1.42297 1.52786 1.58558 2.05543 2.28997 2.66742 2.84037 3.21319 3.32379 3.37944 3.56384 3.81444 3.91094 4.12241 4.15514 4.24987 4.27065 4.30821 4.35330 4.37602 4.45772 4.52014 4.52645 4.62017 4.71138 4.71557 4.74924 4.84133 5.10128 5.13664 5.27133 5.42164 5.50529 5.57372 5.61589 5.83649 5.95685 6.05577 6.10441 6.61153 6.61773 7.14057 7.57289 8.12827 8.72059 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020197 B = 0.003048 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.035127 B = 9185.591102 C =10302.089505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.351 6.351 3 C 0.484 3.516 4 O -0.528 6.528 5 C -0.030 4.030 6 H 0.136 0.864 7 C 0.070 3.930 8 N -0.521 5.521 9 C 0.056 3.944 10 C 0.443 3.557 11 O -0.611 6.611 12 N -0.573 5.573 13 C -0.331 4.331 14 H 0.080 0.920 15 C -0.013 4.013 16 N -0.921 5.921 17 Si 0.992 3.008 18 H -0.272 1.272 19 H -0.271 1.271 20 H -0.272 1.272 21 C 0.088 3.912 22 C -0.075 4.075 23 C -0.134 4.134 24 C -0.113 4.113 25 C -0.124 4.124 26 C -0.119 4.119 27 C -0.094 4.094 28 H 0.136 0.864 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.396 0.604 36 H 0.277 0.723 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.125 0.875 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.373 -14.754 4.746 24.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.267 6.267 3 C 0.327 3.673 4 O -0.417 6.417 5 C -0.049 4.049 6 H 0.153 0.847 7 C -0.058 4.058 8 N -0.245 5.245 9 C -0.075 4.075 10 C 0.231 3.769 11 O -0.497 6.497 12 N -0.210 5.210 13 C -0.461 4.461 14 H 0.098 0.902 15 C -0.213 4.213 16 N -0.562 5.562 17 Si 0.815 3.185 18 H -0.197 1.197 19 H -0.196 1.196 20 H -0.197 1.197 21 C -0.039 4.039 22 C -0.075 4.075 23 C -0.152 4.152 24 C -0.131 4.131 25 C -0.141 4.141 26 C -0.136 4.136 27 C -0.095 4.095 28 H 0.154 0.846 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.136 0.864 34 H 0.088 0.912 35 H 0.230 0.770 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.143 0.857 40 H 0.167 0.833 41 H 0.172 0.828 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -17.925 -15.288 4.562 23.997 hybrid contribution 0.383 1.545 0.302 1.620 sum -17.542 -13.743 4.865 22.809 Atomic orbital electron populations 1.23619 0.74643 1.05974 1.02578 1.86501 1.25036 1.31803 1.83373 1.23369 0.91142 0.81624 0.71134 1.90663 1.67436 1.37177 1.46426 1.19878 0.86842 0.98118 1.00106 0.84660 1.21979 0.86732 0.93849 1.03253 1.61709 1.12157 1.27498 1.23145 1.21808 0.91559 0.90202 1.03908 1.20604 0.90029 0.83746 0.82558 1.90467 1.72716 1.32278 1.54284 1.41907 1.06487 1.11145 1.61484 1.19624 0.82479 0.97717 1.46244 0.90182 1.26025 1.04874 0.94169 0.96191 1.69669 1.38259 1.01304 1.47002 0.85006 0.76905 0.77672 0.78874 1.19721 1.19593 1.19676 1.21087 1.01470 0.93654 0.87720 1.19647 0.95923 0.96216 0.95746 1.21234 1.00732 0.96544 0.96689 1.21439 0.96298 0.94822 1.00506 1.21459 0.96907 1.00850 0.94903 1.21754 1.00485 0.93598 0.97803 1.19154 0.97665 0.96730 0.95902 0.84629 0.92123 0.91766 0.93615 0.88073 0.86449 0.91181 0.77015 0.91333 0.89627 0.93846 0.85735 0.83339 0.82806 0.82735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.56 113.37 1.20 1.49 16 2 O -0.35 -6.39 7.67 -51.38 -0.39 -6.79 16 3 C 0.48 11.37 7.06 71.24 0.50 11.88 16 4 O -0.53 -14.87 15.57 21.95 0.34 -14.53 16 5 C -0.03 -0.76 2.92 -12.32 -0.04 -0.80 16 6 H 0.14 3.14 8.14 -2.39 -0.02 3.12 16 7 C 0.07 1.93 4.29 86.22 0.37 2.30 16 8 N -0.52 -17.74 4.42 -905.81 -4.01 -21.75 16 9 C 0.06 1.98 5.44 85.56 0.47 2.45 16 10 C 0.44 21.09 7.53 87.66 0.66 21.75 16 11 O -0.61 -33.49 13.87 -3.06 -0.04 -33.53 16 12 N -0.57 -29.39 5.29 -306.99 -1.62 -31.01 16 13 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 14 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 15 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 16 N -0.92 -49.92 13.05 21.66 0.28 -49.64 16 17 Si 0.99 43.03 29.55 68.60 2.03 45.06 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 C 0.09 3.06 4.83 85.59 0.41 3.47 16 22 C -0.07 -2.27 5.79 -19.87 -0.12 -2.38 16 23 C -0.13 -3.55 9.65 22.33 0.22 -3.33 16 24 C -0.11 -2.33 10.05 22.22 0.22 -2.11 16 25 C -0.12 -2.32 10.05 22.23 0.22 -2.09 16 26 C -0.12 -2.57 9.00 22.33 0.20 -2.37 16 27 C -0.09 -2.51 5.44 -19.85 -0.11 -2.62 16 28 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.78 8.13 -2.39 -0.02 0.76 16 30 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 31 H 0.05 1.31 7.70 -2.39 -0.02 1.29 16 32 H 0.10 2.52 7.87 -2.39 -0.02 2.50 16 33 H 0.12 3.60 7.91 -2.39 -0.02 3.58 16 34 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 35 H 0.40 19.34 7.90 -92.70 -0.73 18.61 16 36 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 37 H 0.09 3.59 5.92 -2.39 -0.01 3.58 16 38 H 0.04 1.44 8.08 -2.39 -0.02 1.42 16 39 H 0.12 3.17 8.06 -2.91 -0.02 3.15 16 40 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 42 H 0.16 2.78 5.34 -2.91 -0.02 2.77 16 Total: -1.00 -70.84 349.51 2.40 -68.44 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: 0.32 Total: 34.28 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 5.49 Total: 9.46 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -5.35 Total: -102.40 kcal Atomic # 8 Polarization: -54.75 SS G_CDS: -0.09 Total: -54.84 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -70.84 2.40 -68.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599667414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.757 kcal (2) G-P(sol) polarization free energy of solvation -70.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds