Wall clock time and date at job start Fri Apr 10 2020 18:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34712 * 117.00426 * 2 1 4 4 O 1.21473 * 119.99549 * 0.02562 * 3 2 1 5 5 C 1.47729 * 120.00279 * 179.97438 * 3 2 1 6 6 C 1.39652 * 120.15534 * 359.97438 * 5 3 2 7 7 C 1.37909 * 119.84551 * 180.02562 * 6 5 3 8 8 C 1.38359 * 120.23038 * 359.97438 * 7 6 5 9 9 C 1.38608 * 120.20798 * 0.02562 * 8 7 6 10 10 C 1.37906 * 120.11880 * 0.02562 * 9 8 7 11 11 C 1.51212 * 108.23937 * 179.97438 * 9 8 7 12 12 N 1.48034 * 105.67421 * 342.46645 * 11 9 8 13 13 C 1.46898 * 111.00267 * 147.04408 * 12 11 9 14 14 C 1.50703 * 109.47447 * 175.09247 * 13 12 11 15 15 O 1.21281 * 119.99448 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00132 * 180.02562 * 14 13 12 17 17 C 1.46502 * 120.00054 * 179.97438 * 16 14 13 18 18 C 1.50693 * 109.47195 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00440 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00034 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99929 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00235 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46969 * 89.99722 * 22 20 18 24 24 H 1.48495 * 109.47175 * 209.99873 * 22 20 18 25 25 H 1.48497 * 109.46945 * 330.00116 * 22 20 18 26 26 C 1.48036 * 103.91095 * 27.66834 * 12 11 9 27 27 H 1.08996 * 109.47712 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47037 * 299.99902 * 1 2 3 29 29 H 1.09006 * 109.46979 * 59.99489 * 1 2 3 30 30 H 1.07997 * 120.07606 * 0.04558 * 6 5 3 31 31 H 1.07999 * 119.88649 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.04464 * 179.97438 * 10 9 8 33 33 H 1.08998 * 110.20941 * 223.41071 * 11 9 8 34 34 H 1.08999 * 110.20267 * 101.51580 * 11 9 8 35 35 H 1.08999 * 109.47148 * 295.09391 * 13 12 11 36 36 H 1.09000 * 109.47065 * 55.09485 * 13 12 11 37 37 H 0.96994 * 120.00106 * 359.97438 * 16 14 13 38 38 H 1.08999 * 109.47106 * 299.99635 * 17 16 14 39 39 H 1.09000 * 109.46829 * 59.99559 * 17 16 14 40 40 H 0.96999 * 120.00017 * 179.97438 * 21 20 18 41 41 H 1.09002 * 110.20517 * 91.37420 * 26 12 11 42 42 H 1.09001 * 110.20958 * 213.26732 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2775 0.0006 6 6 4.3026 0.1084 0.0017 7 6 5.6794 0.1879 0.0027 8 6 6.3059 1.4216 0.0022 9 6 5.5536 2.5858 0.0011 10 6 4.1761 2.5196 0.0011 11 6 6.5030 3.7627 0.0014 12 7 7.8115 3.2209 0.4320 13 6 8.9174 3.9352 -0.2197 14 6 10.2296 3.4399 0.3315 15 8 10.2423 2.5764 1.1831 16 7 11.3889 3.9564 -0.1218 17 6 12.6646 3.4752 0.4144 18 6 13.7990 4.2079 -0.2543 19 1 13.5907 4.9574 -1.0034 20 6 15.1028 3.9222 0.0911 21 7 15.3565 3.0099 1.0037 22 14 16.5091 4.8310 -0.7372 23 1 16.8332 6.0547 0.0392 24 1 17.7030 3.9498 -0.7935 25 1 16.1089 5.2111 -2.1158 26 6 7.7689 1.8047 0.0031 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.8162 -0.8559 0.0013 31 1 6.2707 -0.7158 0.0031 32 1 3.5911 3.4274 0.0007 33 1 6.1604 4.5226 0.7038 34 1 6.5811 4.1835 -1.0011 35 1 8.8833 3.7549 -1.2941 36 1 8.8229 5.0040 -0.0275 37 1 11.3788 4.6467 -0.8031 38 1 12.6982 3.6556 1.4888 39 1 12.7594 2.4064 0.2223 40 1 16.2739 2.8087 1.2465 41 1 8.1855 1.7021 -0.9989 42 1 8.3209 1.1814 0.7067 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730260540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:57 Heat of formation + Delta-G solvation = -77.335558 kcal Electronic energy + Delta-G solvation = -24979.351257 eV Core-core repulsion = 21117.819010 eV Total energy + Delta-G solvation = -3861.532247 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.10208 -40.30896 -38.78217 -37.01226 -36.55440 -34.17257 -32.41594 -32.00800 -31.82363 -28.86002 -28.01091 -27.66583 -26.44273 -23.92677 -22.89900 -22.12613 -21.45178 -20.83613 -19.69409 -18.06999 -17.39142 -17.17542 -16.71392 -16.38532 -16.08240 -15.75357 -15.30581 -14.89787 -14.79746 -14.60836 -14.11230 -13.93496 -13.76997 -13.69793 -13.48869 -13.04263 -12.84981 -12.66153 -12.47721 -12.26657 -11.98428 -11.94651 -11.80149 -11.34771 -11.20015 -11.18493 -11.00013 -10.88927 -10.87841 -10.33593 -9.42366 -9.38630 -9.24842 -9.02471 -8.75585 -8.36609 -7.90084 -6.18663 -4.25793 0.34708 1.00968 2.18622 2.27954 3.22715 3.28780 3.30876 3.32470 3.40161 3.55622 4.02012 4.22646 4.24313 4.37431 4.42829 4.63979 4.70428 4.78650 4.94764 5.01604 5.05847 5.14256 5.17517 5.21605 5.26865 5.34504 5.37426 5.53457 5.57333 5.65509 5.78901 5.87294 5.91265 6.04410 6.21923 6.48021 6.61759 6.71063 7.28997 7.36816 7.41145 7.49783 7.64618 7.94919 8.59766 8.76215 9.07977 9.41020 10.91454 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.049583 B = 0.001886 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.572896 B =14841.406598 C =15181.418565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.513 3.487 4 O -0.508 6.508 5 C -0.134 4.134 6 C -0.057 4.057 7 C -0.114 4.114 8 C -0.053 4.053 9 C -0.115 4.115 10 C -0.033 4.033 11 C 0.076 3.924 12 N -0.481 5.481 13 C 0.023 3.977 14 C 0.499 3.501 15 O -0.538 6.538 16 N -0.714 5.714 17 C 0.251 3.749 18 C -0.545 4.545 19 H 0.063 0.937 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.071 3.929 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.390 0.610 38 H 0.027 0.973 39 H 0.026 0.974 40 H 0.266 0.734 41 H 0.067 0.933 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.472 -4.110 -5.401 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.358 3.642 4 O -0.397 6.397 5 C -0.135 4.135 6 C -0.075 4.075 7 C -0.133 4.133 8 C -0.054 4.054 9 C -0.116 4.116 10 C -0.052 4.052 11 C -0.052 4.052 12 N -0.204 5.204 13 C -0.109 4.109 14 C 0.282 3.718 15 O -0.416 6.416 16 N -0.363 5.363 17 C 0.131 3.869 18 C -0.583 4.583 19 H 0.081 0.919 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.731 3.269 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.056 4.056 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.159 0.841 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.222 0.778 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -26.392 -4.477 -4.095 27.080 hybrid contribution 0.524 0.810 -1.599 1.867 sum -25.868 -3.667 -5.694 26.740 Atomic orbital electron populations 1.23298 0.75814 1.03863 1.02717 1.86538 1.23675 1.32615 1.84351 1.21163 0.89044 0.81425 0.72539 1.90836 1.66811 1.36030 1.45993 1.18860 0.88798 0.94768 1.11105 1.21365 0.93354 0.97931 0.94830 1.20534 0.93970 0.97075 1.01690 1.21109 0.96542 0.93559 0.94146 1.20471 0.93094 0.96182 1.01846 1.20439 0.92743 0.96924 0.95063 1.21692 0.87816 0.95164 1.00507 1.65052 1.00522 1.01669 1.53154 1.22350 0.90946 1.00388 0.97173 1.20162 0.85069 0.83279 0.83245 1.90662 1.87374 1.31675 1.31841 1.46440 1.07132 1.40878 1.41882 1.19093 0.77572 0.95379 0.94891 1.21226 0.90862 1.22656 1.23545 0.91905 1.24952 0.98919 0.95119 0.95009 1.69972 1.20491 1.31256 1.30490 0.86414 0.81336 0.79477 0.79670 1.20444 1.21005 1.19781 1.21864 0.91455 0.91135 1.01102 0.87861 0.91729 0.91775 0.84089 0.84676 0.84459 0.88483 0.91649 0.91715 0.87625 0.77788 0.95478 0.95575 0.92428 0.91528 0.86937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.18 9.82 -40.53 -0.40 -3.58 16 3 C 0.51 5.56 7.90 34.61 0.27 5.84 16 4 O -0.51 -6.60 16.14 -19.25 -0.31 -6.92 16 5 C -0.13 -1.40 5.87 -104.98 -0.62 -2.01 16 6 C -0.06 -0.52 9.62 -39.17 -0.38 -0.89 16 7 C -0.11 -1.11 10.02 -39.66 -0.40 -1.51 16 8 C -0.05 -0.61 6.27 -104.18 -0.65 -1.26 16 9 C -0.12 -1.27 6.25 -104.36 -0.65 -1.93 16 10 C -0.03 -0.35 9.59 -39.20 -0.38 -0.73 16 11 C 0.08 0.80 6.61 -4.10 -0.03 0.77 16 12 N -0.48 -6.55 5.16 -236.34 -1.22 -7.77 16 13 C 0.02 0.30 5.12 -4.98 -0.03 0.28 16 14 C 0.50 9.44 7.63 -10.99 -0.08 9.36 16 15 O -0.54 -12.43 15.07 5.56 0.08 -12.35 16 16 N -0.71 -14.37 5.55 -61.47 -0.34 -14.71 16 17 C 0.25 6.52 5.43 -5.20 -0.03 6.49 16 18 C -0.54 -14.52 9.28 -34.44 -0.32 -14.84 16 19 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.88 -25.79 13.29 55.43 0.74 -25.05 16 22 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 26 C 0.07 0.94 5.68 -4.09 -0.02 0.92 16 27 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.14 0.99 7.61 -52.49 -0.40 0.59 16 31 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.14 1.34 7.65 -52.49 -0.40 0.94 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.57 7.81 -51.93 -0.41 0.17 16 35 H 0.06 0.71 7.82 -51.93 -0.41 0.31 16 36 H 0.11 1.17 8.13 -51.93 -0.42 0.75 16 37 H 0.39 6.61 8.32 -40.82 -0.34 6.27 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.07 0.82 7.61 -51.93 -0.40 0.43 16 42 H 0.11 1.73 7.37 -51.93 -0.38 1.35 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -34.00 362.30 -8.99 -42.99 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.64 Total: 2.96 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -2.34 Total: 3.42 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -0.82 Total: -47.54 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.62 Total: -22.84 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.00 -8.99 -42.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730260540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.348 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds