Wall clock time and date at job start Fri Apr 10 2020 18:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34712 * 117.00426 * 2 1 4 4 O 1.21473 * 119.99549 * 0.02562 * 3 2 1 5 5 C 1.47729 * 120.00279 * 179.97438 * 3 2 1 6 6 C 1.39652 * 120.15534 * 359.97438 * 5 3 2 7 7 C 1.37909 * 119.84551 * 180.02562 * 6 5 3 8 8 C 1.38359 * 120.23038 * 359.97438 * 7 6 5 9 9 C 1.38608 * 120.20798 * 0.02562 * 8 7 6 10 10 C 1.37906 * 120.11880 * 0.02562 * 9 8 7 11 11 C 1.51212 * 108.23937 * 179.97438 * 9 8 7 12 12 N 1.48034 * 105.67421 * 342.46645 * 11 9 8 13 13 C 1.46898 * 111.00267 * 147.04408 * 12 11 9 14 14 C 1.50703 * 109.47447 * 175.09247 * 13 12 11 15 15 O 1.21281 * 119.99448 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00132 * 180.02562 * 14 13 12 17 17 C 1.46502 * 120.00054 * 179.97438 * 16 14 13 18 18 C 1.50693 * 109.47195 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00440 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00034 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99929 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00235 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46969 * 89.99722 * 22 20 18 24 24 H 1.48495 * 109.47175 * 209.99873 * 22 20 18 25 25 H 1.48497 * 109.46945 * 330.00116 * 22 20 18 26 26 C 1.48036 * 103.91095 * 27.66834 * 12 11 9 27 27 H 1.08996 * 109.47712 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47037 * 299.99902 * 1 2 3 29 29 H 1.09006 * 109.46979 * 59.99489 * 1 2 3 30 30 H 1.07997 * 120.07606 * 0.04558 * 6 5 3 31 31 H 1.07999 * 119.88649 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.04464 * 179.97438 * 10 9 8 33 33 H 1.08998 * 110.20941 * 223.41071 * 11 9 8 34 34 H 1.08999 * 110.20267 * 101.51580 * 11 9 8 35 35 H 1.08999 * 109.47148 * 295.09391 * 13 12 11 36 36 H 1.09000 * 109.47065 * 55.09485 * 13 12 11 37 37 H 0.96994 * 120.00106 * 359.97438 * 16 14 13 38 38 H 1.08999 * 109.47106 * 299.99635 * 17 16 14 39 39 H 1.09000 * 109.46829 * 59.99559 * 17 16 14 40 40 H 0.96999 * 120.00017 * 179.97438 * 21 20 18 41 41 H 1.09002 * 110.20517 * 91.37420 * 26 12 11 42 42 H 1.09001 * 110.20958 * 213.26732 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5389 1.2775 0.0006 6 6 4.3026 0.1084 0.0017 7 6 5.6794 0.1879 0.0027 8 6 6.3059 1.4216 0.0022 9 6 5.5536 2.5858 0.0011 10 6 4.1761 2.5196 0.0011 11 6 6.5030 3.7627 0.0014 12 7 7.8115 3.2209 0.4320 13 6 8.9174 3.9352 -0.2197 14 6 10.2296 3.4399 0.3315 15 8 10.2423 2.5764 1.1831 16 7 11.3889 3.9564 -0.1218 17 6 12.6646 3.4752 0.4144 18 6 13.7990 4.2079 -0.2543 19 1 13.5907 4.9574 -1.0034 20 6 15.1028 3.9222 0.0911 21 7 15.3565 3.0099 1.0037 22 14 16.5091 4.8310 -0.7372 23 1 16.8332 6.0547 0.0392 24 1 17.7030 3.9498 -0.7935 25 1 16.1089 5.2111 -2.1158 26 6 7.7689 1.8047 0.0031 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.8162 -0.8559 0.0013 31 1 6.2707 -0.7158 0.0031 32 1 3.5911 3.4274 0.0007 33 1 6.1604 4.5226 0.7038 34 1 6.5811 4.1835 -1.0011 35 1 8.8833 3.7549 -1.2941 36 1 8.8229 5.0040 -0.0275 37 1 11.3788 4.6467 -0.8031 38 1 12.6982 3.6556 1.4888 39 1 12.7594 2.4064 0.2223 40 1 16.2739 2.8087 1.2465 41 1 8.1855 1.7021 -0.9989 42 1 8.3209 1.1814 0.7067 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730260540.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:57 Heat of formation + Delta-G solvation = -101.680931 kcal Electronic energy + Delta-G solvation = -24980.406952 eV Core-core repulsion = 21117.819010 eV Total energy + Delta-G solvation = -3862.587942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.93048 -41.21163 -40.20943 -37.91548 -37.42900 -36.05833 -34.33282 -33.00025 -32.64088 -30.06992 -29.12658 -28.53940 -27.72161 -25.12983 -24.18403 -23.33588 -22.37584 -21.61504 -21.30111 -19.08332 -18.68927 -18.12844 -17.60214 -17.44694 -17.34688 -17.05054 -16.66808 -16.37380 -16.01279 -15.52561 -15.44077 -14.92231 -14.76888 -14.51870 -14.39887 -14.20817 -14.15181 -13.91482 -13.70417 -13.54726 -13.14689 -13.01917 -12.89644 -12.74489 -12.66864 -12.48994 -12.21242 -11.96971 -11.84886 -11.71138 -11.46939 -10.78777 -10.71552 -10.18105 -10.01955 -9.78424 -9.29027 -8.27813 -6.44251 -0.46774 0.24517 1.36979 1.44363 1.46500 1.57565 1.60017 1.81670 2.25847 2.45427 2.61377 2.99843 3.07263 3.30649 3.38524 3.65857 3.89251 3.95474 4.15523 4.17411 4.28264 4.31889 4.33386 4.36316 4.43208 4.48263 4.52458 4.70993 4.75686 4.83177 4.91607 5.09536 5.13574 5.15751 5.27044 5.28415 5.36344 5.50970 5.65812 5.69988 5.70784 5.82670 5.87326 6.59425 6.67386 6.96968 7.25523 7.55478 8.84238 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.049583 B = 0.001886 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.572896 B =14841.406598 C =15181.418565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.515 3.485 4 O -0.535 6.535 5 C -0.143 4.143 6 C -0.048 4.048 7 C -0.115 4.115 8 C -0.069 4.069 9 C -0.120 4.120 10 C -0.037 4.037 11 C 0.080 3.920 12 N -0.508 5.508 13 C 0.038 3.962 14 C 0.495 3.505 15 O -0.586 6.586 16 N -0.709 5.709 17 C 0.268 3.732 18 C -0.556 4.556 19 H 0.085 0.915 20 C 0.003 3.997 21 N -0.931 5.931 22 Si 0.984 3.016 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.255 1.255 26 C 0.075 3.925 27 H 0.135 0.865 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.164 0.836 31 H 0.151 0.849 32 H 0.143 0.857 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.137 0.863 37 H 0.409 0.591 38 H -0.015 1.015 39 H -0.013 1.013 40 H 0.268 0.732 41 H 0.072 0.928 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.716 -3.015 -7.379 28.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.362 3.638 4 O -0.427 6.427 5 C -0.144 4.144 6 C -0.066 4.066 7 C -0.134 4.134 8 C -0.070 4.070 9 C -0.120 4.120 10 C -0.056 4.056 11 C -0.047 4.047 12 N -0.232 5.232 13 C -0.092 4.092 14 C 0.281 3.719 15 O -0.466 6.466 16 N -0.360 5.360 17 C 0.145 3.855 18 C -0.594 4.594 19 H 0.103 0.897 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.807 3.193 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.178 1.178 26 C -0.053 4.053 27 H 0.153 0.847 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.182 0.818 31 H 0.169 0.831 32 H 0.161 0.839 33 H 0.125 0.875 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.155 0.845 37 H 0.245 0.755 38 H 0.003 0.997 39 H 0.005 0.995 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -27.686 -3.364 -6.107 28.550 hybrid contribution 0.792 0.367 -0.927 1.273 sum -26.893 -2.997 -7.034 27.959 Atomic orbital electron populations 1.23616 0.74075 1.06021 1.02710 1.86528 1.25379 1.31485 1.83762 1.21240 0.89160 0.81573 0.71840 1.90820 1.67390 1.36976 1.47484 1.19018 0.88913 0.95263 1.11223 1.21579 0.92942 0.98535 0.93542 1.20772 0.94447 0.97185 1.00957 1.21102 0.95604 0.94621 0.95643 1.20537 0.93261 0.96245 1.01969 1.20514 0.92592 0.97369 0.95097 1.21738 0.85832 0.94991 1.02126 1.64944 1.01959 1.01957 1.54360 1.22267 0.87093 1.01521 0.98353 1.21252 0.86539 0.81989 0.82093 1.90646 1.88219 1.33760 1.34009 1.46153 1.05817 1.41565 1.42442 1.18498 0.80709 0.93456 0.92831 1.21642 0.91108 1.22859 1.23761 0.89699 1.26061 1.02226 0.95851 0.95496 1.70139 1.21258 1.33211 1.32353 0.85165 0.77062 0.77851 0.79185 1.19709 1.21094 1.17849 1.21689 0.92359 0.90891 1.00328 0.84656 0.91866 0.91720 0.81840 0.83101 0.83945 0.87482 0.89108 0.88442 0.84514 0.75544 0.99678 0.99478 0.92319 0.91040 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.75 9.82 -56.22 -0.55 -6.31 16 3 C 0.52 10.59 7.90 70.33 0.56 11.15 16 4 O -0.54 -13.57 16.14 19.92 0.32 -13.25 16 5 C -0.14 -2.80 5.87 -20.10 -0.12 -2.91 16 6 C -0.05 -0.79 9.62 22.53 0.22 -0.58 16 7 C -0.12 -2.11 10.02 22.22 0.22 -1.89 16 8 C -0.07 -1.54 6.27 -19.58 -0.12 -1.66 16 9 C -0.12 -2.47 6.25 -19.69 -0.12 -2.60 16 10 C -0.04 -0.74 9.59 22.52 0.22 -0.52 16 11 C 0.08 1.49 6.61 85.50 0.56 2.06 16 12 N -0.51 -13.27 5.16 -901.63 -4.66 -17.93 16 13 C 0.04 0.93 5.12 85.56 0.44 1.37 16 14 C 0.49 18.82 7.63 87.66 0.67 19.49 16 15 O -0.59 -28.33 15.07 -3.03 -0.05 -28.38 16 16 N -0.71 -28.62 5.55 -466.80 -2.59 -31.21 16 17 C 0.27 14.48 5.43 85.63 0.46 14.95 16 18 C -0.56 -29.75 9.28 25.60 0.24 -29.51 16 19 H 0.09 4.06 7.60 -2.91 -0.02 4.04 16 20 C 0.00 0.18 5.46 84.65 0.46 0.64 16 21 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 22 Si 0.98 41.81 29.54 68.60 2.03 43.83 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 26 C 0.07 1.97 5.68 85.51 0.49 2.46 16 27 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.16 1.89 7.61 -2.91 -0.02 1.87 16 31 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.14 2.62 7.65 -2.91 -0.02 2.60 16 33 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.09 1.26 7.81 -2.39 -0.02 1.24 16 35 H 0.10 1.79 7.82 -2.39 -0.02 1.78 16 36 H 0.14 2.52 8.13 -2.39 -0.02 2.51 16 37 H 0.41 13.22 8.32 -92.71 -0.77 12.45 16 38 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 39 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 40 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 41 H 0.07 1.74 7.61 -2.39 -0.02 1.72 16 42 H 0.08 2.58 7.37 -2.39 -0.02 2.56 16 Total: -1.00 -77.51 362.30 0.44 -77.07 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.28 Total: 17.82 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 5.37 Total: 13.93 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -6.96 Total: -104.72 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -0.28 Total: -47.93 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -77.51 0.44 -77.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730260540.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.609 kcal (2) G-P(sol) polarization free energy of solvation -77.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds