Wall clock time and date at job start Fri Apr 10 2020 18:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99921 * 2 1 4 4 O 1.20829 * 120.00031 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99931 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.46986 * 180.02562 * 5 3 2 7 7 H 1.09009 * 110.80182 * 54.88990 * 6 5 3 8 8 C 1.54603 * 110.73933 * 178.18270 * 6 5 3 9 9 N 1.47908 * 102.62403 * 92.78407 * 8 6 5 10 10 C 1.46901 * 110.99622 * 265.42772 * 9 8 6 11 11 C 1.50700 * 109.47289 * 285.30577 * 10 9 8 12 12 O 1.21295 * 119.99931 * 354.70730 * 11 10 9 13 13 N 1.34779 * 120.00263 * 174.71142 * 11 10 9 14 14 C 1.37091 * 119.99825 * 180.02562 * 13 11 10 15 15 H 1.07995 * 120.00583 * 359.97438 * 14 13 11 16 16 C 1.38953 * 119.99682 * 179.97438 * 14 13 11 17 17 N 1.31411 * 120.00086 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00152 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47101 * 0.02562 * 18 16 14 20 20 H 1.48511 * 109.47060 * 119.99956 * 18 16 14 21 21 H 1.48496 * 109.47370 * 240.00108 * 18 16 14 22 22 C 1.40030 * 107.89022 * 27.24745 * 9 8 6 23 23 C 1.39406 * 129.94922 * 161.89031 * 22 9 8 24 24 C 1.37912 * 120.19939 * 179.29699 * 23 22 9 25 25 C 1.38307 * 120.26285 * 0.52862 * 24 23 22 26 26 C 1.38298 * 119.88311 * 359.61506 * 25 24 23 27 27 C 1.37919 * 120.08041 * 0.20430 * 26 25 24 28 28 H 1.09003 * 109.47088 * 299.99514 * 1 2 3 29 29 H 1.08998 * 109.47631 * 59.99760 * 1 2 3 30 30 H 1.08999 * 109.47452 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46680 * 60.00110 * 5 3 2 32 32 H 1.09002 * 109.47235 * 300.00567 * 5 3 2 33 33 H 1.09005 * 110.77952 * 211.06733 * 8 6 5 34 34 H 1.08998 * 110.77685 * 334.49951 * 8 6 5 35 35 H 1.08993 * 109.47515 * 45.30846 * 10 9 8 36 36 H 1.09000 * 109.46988 * 165.30475 * 10 9 8 37 37 H 0.97001 * 119.99443 * 359.97438 * 13 11 10 38 38 H 0.96998 * 120.00147 * 179.97438 * 17 16 14 39 39 H 1.07998 * 119.89956 * 359.53176 * 23 22 9 40 40 H 1.07999 * 119.86464 * 180.26484 * 24 23 22 41 41 H 1.07994 * 120.05287 * 179.89610 * 25 24 23 42 42 H 1.07996 * 119.96004 * 180.18425 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 1 3.5475 3.2793 0.8347 8 6 5.5411 2.8574 0.0476 9 7 5.9025 2.9388 -1.3844 10 6 6.2403 1.6125 -1.9182 11 6 7.6030 1.2033 -1.4218 12 8 8.2715 1.9814 -0.7745 13 7 8.0791 -0.0272 -1.6971 14 6 9.3186 -0.3995 -1.2450 15 1 9.9138 0.2932 -0.6687 16 6 9.8092 -1.6683 -1.5284 17 7 9.0848 -2.5114 -2.2293 18 14 11.4984 -2.1755 -0.9131 19 1 12.1061 -1.0534 -0.1535 20 1 11.3673 -3.3594 -0.0261 21 1 12.3646 -2.5172 -2.0698 22 6 4.8161 3.4944 -2.0713 23 6 4.7615 4.0823 -3.3341 24 6 3.5644 4.5578 -3.8268 25 6 2.4120 4.4648 -3.0677 26 6 2.4585 3.8855 -1.8127 27 6 3.6525 3.4052 -1.3169 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.9563 0.7806 -0.8892 32 1 3.9557 0.7809 0.8908 33 1 5.8456 3.7613 0.5752 34 1 5.9813 1.9728 0.5078 35 1 5.4989 0.8868 -1.5842 36 1 6.2466 1.6502 -3.0075 37 1 7.5443 -0.6495 -2.2145 38 1 9.4274 -3.3970 -2.4275 39 1 5.6587 4.1622 -3.9300 40 1 3.5274 5.0083 -4.8077 41 1 1.4767 4.8397 -3.4561 42 1 1.5589 3.8096 -1.2200 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741791784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:02 Heat of formation + Delta-G solvation = -70.223774 kcal Electronic energy + Delta-G solvation = -26847.129960 eV Core-core repulsion = 22985.906103 eV Total energy + Delta-G solvation = -3861.223857 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.30793 -40.19813 -38.11252 -36.77199 -36.45158 -33.96741 -33.20197 -31.27077 -30.37882 -29.76597 -28.55373 -27.51618 -25.83139 -24.16972 -22.78259 -21.68930 -21.04512 -20.15797 -19.22365 -17.93688 -17.78966 -16.97835 -16.86282 -16.36736 -16.01502 -15.63868 -15.12752 -14.79261 -14.39554 -14.22144 -14.13509 -13.88259 -13.70818 -13.23135 -13.11858 -12.79326 -12.55915 -12.33501 -12.24698 -12.19779 -12.01723 -11.67209 -11.53166 -11.26476 -11.08879 -10.98758 -10.87565 -10.64680 -10.46540 -10.35549 -10.24441 -9.53531 -9.39367 -8.70369 -8.31277 -7.98796 -7.67805 -6.43675 -3.84572 1.39274 1.52166 2.07394 2.55919 3.15083 3.26234 3.33115 3.69899 3.85052 3.88777 4.18296 4.46343 4.54818 4.66815 4.88523 4.93757 4.97473 5.00397 5.10591 5.15470 5.16079 5.23155 5.31313 5.36501 5.39420 5.48924 5.65717 5.75055 5.84495 5.86984 6.01980 6.03453 6.19265 6.21924 6.31135 6.48740 6.60159 6.65363 6.89896 7.11161 7.47913 7.53815 7.63751 8.03790 8.58980 9.16122 9.51385 10.02864 10.74010 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.003695 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.139525 B = 7575.274005 C = 8808.501765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.360 6.360 3 C 0.464 3.536 4 O -0.502 6.502 5 C -0.110 4.110 6 C -0.069 4.069 7 H 0.099 0.901 8 C 0.068 3.932 9 N -0.467 5.467 10 C 0.046 3.954 11 C 0.441 3.559 12 O -0.573 6.573 13 N -0.564 5.564 14 C -0.298 4.298 15 H 0.104 0.896 16 C 0.023 3.977 17 N -0.901 5.901 18 Si 0.928 3.072 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.102 3.898 23 C -0.119 4.119 24 C -0.101 4.101 25 C -0.148 4.148 26 C -0.076 4.076 27 C -0.139 4.139 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.611 6.112 0.729 18.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.308 3.692 4 O -0.390 6.390 5 C -0.147 4.147 6 C -0.089 4.089 7 H 0.117 0.883 8 C -0.059 4.059 9 N -0.182 5.182 10 C -0.083 4.083 11 C 0.226 3.774 12 O -0.457 6.457 13 N -0.201 5.201 14 C -0.428 4.428 15 H 0.122 0.878 16 C -0.179 4.179 17 N -0.542 5.542 18 Si 0.756 3.244 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.208 1.208 22 C 0.005 3.995 23 C -0.139 4.139 24 C -0.120 4.120 25 C -0.166 4.166 26 C -0.095 4.095 27 C -0.142 4.142 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.807 7.002 1.070 18.238 hybrid contribution -0.364 -1.169 -0.082 1.227 sum -17.170 5.833 0.988 18.161 Atomic orbital electron populations 1.23240 0.76498 1.03625 1.02402 1.86543 1.23341 1.33626 1.84128 1.23782 0.92113 0.81230 0.72083 1.90564 1.67301 1.36057 1.45097 1.21674 0.87734 0.98786 1.06529 1.21262 0.97974 0.92826 0.96802 0.88251 1.23171 0.89916 1.04381 0.88418 1.59565 1.34523 1.21425 1.02702 1.22137 0.97121 0.88199 1.00851 1.19673 0.88059 0.83524 0.86164 1.90544 1.59797 1.51947 1.43370 1.41864 1.17521 1.12124 1.48557 1.19744 0.93127 0.98513 1.31400 0.87816 1.25253 0.99848 0.95749 0.97003 1.69616 1.38028 1.07581 1.39001 0.85816 0.81564 0.78616 0.78452 1.19197 1.20762 1.20750 1.19714 0.88783 0.96985 0.93981 1.20510 0.98392 1.00390 0.94652 1.20907 0.92234 0.99342 0.99511 1.21042 0.98249 1.02354 0.94998 1.20800 0.97376 0.95958 0.95322 1.20827 0.93728 1.02551 0.97079 0.91987 0.91949 0.88198 0.87335 0.86689 0.88680 0.88838 0.92487 0.89045 0.77509 0.91900 0.85818 0.85962 0.86308 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.12 10.57 -39.26 -0.41 -4.53 16 3 C 0.46 5.69 7.75 36.01 0.28 5.97 16 4 O -0.50 -6.79 12.25 -18.75 -0.23 -7.02 16 5 C -0.11 -1.29 5.01 -27.88 -0.14 -1.43 16 6 C -0.07 -0.89 2.62 -90.50 -0.24 -1.13 16 7 H 0.10 1.21 7.99 -51.92 -0.41 0.80 16 8 C 0.07 1.03 5.93 -2.43 -0.01 1.01 16 9 N -0.47 -7.98 4.61 -170.38 -0.79 -8.76 16 10 C 0.05 0.81 5.23 -4.98 -0.03 0.78 16 11 C 0.44 10.09 7.22 -10.98 -0.08 10.01 16 12 O -0.57 -15.16 15.44 5.54 0.09 -15.07 16 13 N -0.56 -13.85 5.29 -10.96 -0.06 -13.91 16 14 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 15 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 16 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 17 N -0.90 -24.03 13.05 55.50 0.72 -23.31 16 18 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 22 C 0.10 1.57 5.50 -83.41 -0.46 1.12 16 23 C -0.12 -1.68 10.05 -39.27 -0.39 -2.07 16 24 C -0.10 -1.21 10.02 -39.68 -0.40 -1.61 16 25 C -0.15 -1.77 10.06 -39.53 -0.40 -2.17 16 26 C -0.08 -1.02 9.09 -39.68 -0.36 -1.38 16 27 C -0.14 -1.97 5.23 -104.04 -0.54 -2.52 16 28 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 29 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.11 1.33 5.71 -51.93 -0.30 1.03 16 32 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.09 1.48 6.99 -51.93 -0.36 1.12 16 35 H 0.06 0.89 5.26 -51.93 -0.27 0.62 16 36 H 0.09 1.53 7.98 -51.93 -0.41 1.11 16 37 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 38 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 40 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.13 1.81 5.79 -52.49 -0.30 1.50 16 LS Contribution 349.48 15.07 5.27 5.27 Total: -1.00 -32.10 349.48 -7.66 -39.76 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -5.28 Total: 11.71 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.95 Total: 0.20 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.12 Total: -45.98 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.56 Total: -26.63 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.10 -7.66 -39.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741791784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.461 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds