Wall clock time and date at job start Fri Apr 10 2020 18:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99921 * 2 1 4 4 O 1.20829 * 120.00031 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99931 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.46986 * 180.02562 * 5 3 2 7 7 H 1.09009 * 110.80182 * 54.88990 * 6 5 3 8 8 C 1.54603 * 110.73933 * 178.18270 * 6 5 3 9 9 N 1.47908 * 102.62403 * 92.78407 * 8 6 5 10 10 C 1.46901 * 110.99622 * 265.42772 * 9 8 6 11 11 C 1.50700 * 109.47289 * 285.30577 * 10 9 8 12 12 O 1.21295 * 119.99931 * 354.70730 * 11 10 9 13 13 N 1.34779 * 120.00263 * 174.71142 * 11 10 9 14 14 C 1.37091 * 119.99825 * 180.02562 * 13 11 10 15 15 H 1.07995 * 120.00583 * 359.97438 * 14 13 11 16 16 C 1.38953 * 119.99682 * 179.97438 * 14 13 11 17 17 N 1.31411 * 120.00086 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00152 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47101 * 0.02562 * 18 16 14 20 20 H 1.48511 * 109.47060 * 119.99956 * 18 16 14 21 21 H 1.48496 * 109.47370 * 240.00108 * 18 16 14 22 22 C 1.40030 * 107.89022 * 27.24745 * 9 8 6 23 23 C 1.39406 * 129.94922 * 161.89031 * 22 9 8 24 24 C 1.37912 * 120.19939 * 179.29699 * 23 22 9 25 25 C 1.38307 * 120.26285 * 0.52862 * 24 23 22 26 26 C 1.38298 * 119.88311 * 359.61506 * 25 24 23 27 27 C 1.37919 * 120.08041 * 0.20430 * 26 25 24 28 28 H 1.09003 * 109.47088 * 299.99514 * 1 2 3 29 29 H 1.08998 * 109.47631 * 59.99760 * 1 2 3 30 30 H 1.08999 * 109.47452 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46680 * 60.00110 * 5 3 2 32 32 H 1.09002 * 109.47235 * 300.00567 * 5 3 2 33 33 H 1.09005 * 110.77952 * 211.06733 * 8 6 5 34 34 H 1.08998 * 110.77685 * 334.49951 * 8 6 5 35 35 H 1.08993 * 109.47515 * 45.30846 * 10 9 8 36 36 H 1.09000 * 109.46988 * 165.30475 * 10 9 8 37 37 H 0.97001 * 119.99443 * 359.97438 * 13 11 10 38 38 H 0.96998 * 120.00147 * 179.97438 * 17 16 14 39 39 H 1.07998 * 119.89956 * 359.53176 * 23 22 9 40 40 H 1.07999 * 119.86464 * 180.26484 * 24 23 22 41 41 H 1.07994 * 120.05287 * 179.89610 * 25 24 23 42 42 H 1.07996 * 119.96004 * 180.18425 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 1 3.5475 3.2793 0.8347 8 6 5.5411 2.8574 0.0476 9 7 5.9025 2.9388 -1.3844 10 6 6.2403 1.6125 -1.9182 11 6 7.6030 1.2033 -1.4218 12 8 8.2715 1.9814 -0.7745 13 7 8.0791 -0.0272 -1.6971 14 6 9.3186 -0.3995 -1.2450 15 1 9.9138 0.2932 -0.6687 16 6 9.8092 -1.6683 -1.5284 17 7 9.0848 -2.5114 -2.2293 18 14 11.4984 -2.1755 -0.9131 19 1 12.1061 -1.0534 -0.1535 20 1 11.3673 -3.3594 -0.0261 21 1 12.3646 -2.5172 -2.0698 22 6 4.8161 3.4944 -2.0713 23 6 4.7615 4.0823 -3.3341 24 6 3.5644 4.5578 -3.8268 25 6 2.4120 4.4648 -3.0677 26 6 2.4585 3.8855 -1.8127 27 6 3.6525 3.4052 -1.3169 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.9563 0.7806 -0.8892 32 1 3.9557 0.7809 0.8908 33 1 5.8456 3.7613 0.5752 34 1 5.9813 1.9728 0.5078 35 1 5.4989 0.8868 -1.5842 36 1 6.2466 1.6502 -3.0075 37 1 7.5443 -0.6495 -2.2145 38 1 9.4274 -3.3970 -2.4275 39 1 5.6587 4.1622 -3.9300 40 1 3.5274 5.0083 -4.8077 41 1 1.4767 4.8397 -3.4561 42 1 1.5589 3.8096 -1.2200 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741791784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:01 Heat of formation + Delta-G solvation = -90.461138 kcal Electronic energy + Delta-G solvation = -26848.007518 eV Core-core repulsion = 22985.906103 eV Total energy + Delta-G solvation = -3862.101415 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.39596 -41.18608 -39.86829 -37.77315 -37.52292 -35.91558 -34.35926 -33.25375 -31.36136 -30.98358 -29.59946 -28.53357 -27.23964 -25.80445 -23.84173 -22.67801 -22.19619 -21.17448 -20.96760 -19.87687 -18.77476 -18.01813 -17.88891 -17.68817 -17.08291 -16.92961 -16.55819 -16.22607 -15.80592 -15.79368 -15.40170 -15.04841 -14.82436 -14.52927 -14.17145 -14.13462 -13.64424 -13.52309 -13.46584 -13.32311 -13.27178 -13.00638 -12.90812 -12.78858 -12.38433 -12.27290 -12.10090 -12.06084 -11.77754 -11.64037 -11.49060 -11.44960 -10.68861 -10.06857 -9.98979 -9.71817 -8.84367 -8.44691 -5.93081 0.36314 0.48649 1.13957 1.38053 1.44191 1.57797 1.72510 2.04195 2.28248 2.55659 2.82746 3.21421 3.24955 3.48805 3.60340 3.62883 3.98540 4.05508 4.08600 4.18109 4.26072 4.27605 4.33740 4.36457 4.44223 4.46502 4.50107 4.67519 4.68424 4.71797 4.75550 4.88934 5.00431 5.15088 5.39044 5.43659 5.45338 5.55370 5.65638 5.85079 5.89501 6.05018 6.35094 6.61712 6.72892 7.14802 7.56938 8.12372 8.72838 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.003695 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.139525 B = 7575.274005 C = 8808.501765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.369 6.369 3 C 0.468 3.532 4 O -0.517 6.517 5 C -0.109 4.109 6 C -0.057 4.057 7 H 0.106 0.894 8 C 0.068 3.932 9 N -0.487 5.487 10 C 0.061 3.939 11 C 0.443 3.557 12 O -0.612 6.612 13 N -0.571 5.571 14 C -0.330 4.330 15 H 0.080 0.920 16 C -0.010 4.010 17 N -0.919 5.919 18 Si 0.990 3.010 19 H -0.273 1.273 20 H -0.271 1.271 21 H -0.273 1.273 22 C 0.076 3.924 23 C -0.130 4.130 24 C -0.097 4.097 25 C -0.140 4.140 26 C -0.085 4.085 27 C -0.143 4.143 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.126 0.874 31 H 0.104 0.896 32 H 0.131 0.869 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.396 0.604 38 H 0.277 0.723 39 H 0.123 0.877 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.138 5.894 0.097 20.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.285 6.285 3 C 0.312 3.688 4 O -0.406 6.406 5 C -0.146 4.146 6 C -0.077 4.077 7 H 0.124 0.876 8 C -0.059 4.059 9 N -0.203 5.203 10 C -0.068 4.068 11 C 0.230 3.770 12 O -0.497 6.497 13 N -0.209 5.209 14 C -0.459 4.459 15 H 0.098 0.902 16 C -0.210 4.210 17 N -0.560 5.560 18 Si 0.814 3.186 19 H -0.198 1.198 20 H -0.196 1.196 21 H -0.198 1.198 22 C -0.020 4.020 23 C -0.150 4.150 24 C -0.115 4.115 25 C -0.158 4.158 26 C -0.103 4.103 27 C -0.145 4.145 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.144 0.856 31 H 0.122 0.878 32 H 0.149 0.851 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.141 0.859 40 H 0.170 0.830 41 H 0.165 0.835 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.369 6.771 0.424 19.581 hybrid contribution 0.011 -1.045 0.084 1.048 sum -18.358 5.726 0.507 19.237 Atomic orbital electron populations 1.23523 0.74702 1.05503 1.02640 1.86525 1.25155 1.33062 1.83808 1.23721 0.92084 0.81308 0.71705 1.90553 1.67623 1.36528 1.45931 1.21633 0.87940 0.97996 1.07042 1.21116 0.96106 0.93702 0.96742 0.87557 1.23113 0.91597 1.03619 0.87593 1.59536 1.36188 1.20974 1.03638 1.21946 0.94088 0.89578 1.01209 1.20542 0.89464 0.82385 0.84596 1.90511 1.61488 1.52874 1.44859 1.41900 1.17093 1.12905 1.48973 1.19681 0.94454 0.99002 1.32812 0.90234 1.25985 1.03081 0.95204 0.96731 1.69673 1.39308 1.07916 1.39151 0.84908 0.77372 0.78124 0.78167 1.19810 1.19575 1.19808 1.19806 0.88612 0.98571 0.95009 1.20735 0.99405 1.00560 0.94320 1.21230 0.91258 0.98399 1.00630 1.21411 0.99438 1.00811 0.94174 1.20923 0.96940 0.96353 0.96111 1.20934 0.93724 1.02658 0.97233 0.91608 0.91879 0.85591 0.87813 0.85149 0.89047 0.90077 0.90271 0.87974 0.77029 0.91323 0.85894 0.82976 0.83468 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.62 16 2 O -0.37 -7.89 10.57 -51.43 -0.54 -8.43 16 3 C 0.47 10.88 7.75 71.24 0.55 11.43 16 4 O -0.52 -13.31 12.25 21.95 0.27 -13.04 16 5 C -0.11 -2.47 5.01 29.85 0.15 -2.32 16 6 C -0.06 -1.45 2.62 -10.72 -0.03 -1.47 16 7 H 0.11 2.53 7.99 -2.38 -0.02 2.51 16 8 C 0.07 2.07 5.93 86.66 0.51 2.59 16 9 N -0.49 -16.77 4.61 -692.96 -3.20 -19.97 16 10 C 0.06 2.14 5.23 85.56 0.45 2.59 16 11 C 0.44 20.79 7.22 87.66 0.63 21.42 16 12 O -0.61 -33.48 15.44 -3.08 -0.05 -33.52 16 13 N -0.57 -28.69 5.29 -306.98 -1.62 -30.32 16 14 C -0.33 -18.39 9.68 84.04 0.81 -17.58 16 15 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 16 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 17 N -0.92 -48.77 13.05 21.66 0.28 -48.48 16 18 Si 0.99 42.34 29.55 68.60 2.03 44.37 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 C 0.08 2.30 5.50 38.29 0.21 2.51 16 23 C -0.13 -3.49 10.05 22.47 0.23 -3.27 16 24 C -0.10 -2.06 10.02 22.21 0.22 -1.84 16 25 C -0.14 -2.95 10.06 22.30 0.22 -2.72 16 26 C -0.08 -2.12 9.09 22.21 0.20 -1.92 16 27 C -0.14 -3.91 5.23 -19.49 -0.10 -4.02 16 28 H 0.07 0.91 8.13 -2.39 -0.02 0.89 16 29 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 30 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 2.46 5.71 -2.39 -0.01 2.44 16 32 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 34 H 0.08 2.65 6.99 -2.39 -0.02 2.63 16 35 H 0.08 2.44 5.26 -2.39 -0.01 2.43 16 36 H 0.10 3.39 7.98 -2.39 -0.02 3.37 16 37 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 38 H 0.28 13.76 8.31 -92.71 -0.77 12.98 16 39 H 0.12 3.23 8.06 -2.91 -0.02 3.20 16 40 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 41 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 42 H 0.13 3.38 5.79 -2.91 -0.02 3.36 16 Total: -1.00 -69.19 349.48 3.23 -65.96 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: 0.33 Total: 36.47 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 5.73 Total: 6.97 kcal Atomic # 7 Polarization: -94.23 SS G_CDS: -4.54 Total: -98.77 kcal Atomic # 8 Polarization: -54.68 SS G_CDS: -0.32 Total: -55.00 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -69.19 3.23 -65.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741791784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.498 kcal (2) G-P(sol) polarization free energy of solvation -69.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds