Wall clock time and date at job start Fri Apr 10 2020 18:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42102 * 108.58131 * 2 1 4 4 O 1.42102 * 108.57566 * 228.98136 * 2 1 3 5 5 C 1.81396 * 101.92306 * 114.49179 * 2 1 3 6 6 C 1.53003 * 109.47265 * 179.97438 * 5 2 1 7 7 N 1.46491 * 109.47152 * 180.02562 * 6 5 2 8 8 C 1.34784 * 119.99548 * 269.99819 * 7 6 5 9 9 O 1.21593 * 119.99538 * 189.07013 * 8 7 6 10 10 N 1.34773 * 120.00149 * 9.07072 * 8 7 6 11 11 C 1.46500 * 119.99691 * 183.93490 * 10 8 7 12 12 C 1.53001 * 109.46704 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.46891 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47236 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99814 * 0.02562 * 14 13 12 16 16 C 1.37883 * 120.00435 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99356 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00052 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47167 * 60.00464 * 18 16 14 20 20 H 1.48500 * 109.46846 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47412 * 300.00101 * 18 16 14 22 22 C 1.46497 * 120.00574 * 89.99981 * 7 6 5 23 23 C 1.52992 * 117.50134 * 195.89608 * 22 7 6 24 24 C 1.53002 * 117.50100 * 127.23345 * 22 7 6 25 25 H 1.09000 * 109.46475 * 305.51019 * 1 2 3 26 26 H 1.09000 * 109.47285 * 65.50757 * 1 2 3 27 27 H 1.08992 * 109.47192 * 185.50966 * 1 2 3 28 28 H 1.09003 * 109.47190 * 59.99691 * 5 2 1 29 29 H 1.08995 * 109.46925 * 299.99916 * 5 2 1 30 30 H 1.09003 * 109.47047 * 59.99875 * 6 5 2 31 31 H 1.09008 * 109.47049 * 300.00223 * 6 5 2 32 32 H 0.96994 * 120.00079 * 3.93820 * 10 8 7 33 33 H 1.09000 * 109.47205 * 299.99970 * 11 10 8 34 34 H 1.08993 * 109.47189 * 60.00277 * 11 10 8 35 35 H 1.09000 * 109.47040 * 299.99796 * 12 11 10 36 36 H 1.08993 * 109.47296 * 60.00068 * 12 11 10 37 37 H 1.08993 * 109.47436 * 299.99928 * 13 12 11 38 38 H 1.09006 * 109.47361 * 59.99824 * 13 12 11 39 39 H 0.97003 * 119.99211 * 180.02562 * 17 16 14 40 40 H 1.08998 * 115.54503 * 341.57095 * 22 7 6 41 41 H 1.09003 * 117.50290 * 0.02562 * 23 22 7 42 42 H 1.09010 * 117.49631 * 145.02099 * 23 22 7 43 43 H 1.08998 * 117.50273 * 214.98470 * 24 22 7 44 44 H 1.09002 * 117.49888 * 359.97438 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8840 -1.0163 5 6 2.1888 -0.7358 1.6151 6 6 3.7055 -0.8197 1.7978 7 7 4.0082 -1.4145 3.1019 8 6 4.1478 -0.6259 4.1860 9 8 4.5591 -1.0948 5.2298 10 7 3.8317 0.6822 4.1131 11 6 4.0644 1.5572 5.2648 12 6 3.6218 2.9809 4.9212 13 6 3.8654 3.8950 6.1237 14 6 3.4301 5.2974 5.7850 15 1 3.0202 5.5149 4.8098 16 6 3.5540 6.3027 6.7206 17 7 4.0528 6.0376 7.9083 18 14 3.0137 8.0409 6.3010 19 1 1.5676 8.0417 5.9631 20 1 3.2503 8.9280 7.4681 21 1 3.7941 8.5348 5.1381 22 6 4.1590 -2.8662 3.2277 23 6 4.1018 -3.4630 4.6353 24 6 5.4360 -3.3892 3.8886 25 1 -0.3632 0.5969 0.8366 26 1 -0.3634 0.4260 -0.9352 27 1 -0.3633 -1.0228 0.0987 28 1 1.7610 -1.7371 1.6663 29 1 1.7611 -0.1173 2.4041 30 1 4.1336 0.1814 1.7464 31 1 4.1329 -1.4385 1.0086 32 1 3.4500 1.0442 3.2983 33 1 3.4912 1.1949 6.1182 34 1 5.1257 1.5563 5.5132 35 1 4.1947 3.3435 4.0677 36 1 2.5605 2.9815 4.6730 37 1 3.2929 3.5326 6.9774 38 1 4.9270 3.8943 6.3714 39 1 4.1396 6.7448 8.5666 40 1 3.7361 -3.4550 2.4138 41 1 3.9515 -2.7756 5.4678 42 1 3.6416 -4.4448 4.7473 43 1 5.8531 -4.3222 3.5097 44 1 6.1642 -2.6530 4.2293 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753607835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:04 Heat of formation + Delta-G solvation = -65.054744 kcal Electronic energy + Delta-G solvation = -24980.622137 eV Core-core repulsion = 21255.066377 eV Total energy + Delta-G solvation = -3725.555760 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.65132 -37.37916 -37.11418 -36.45052 -35.80896 -34.86918 -33.11392 -31.27848 -30.63693 -29.93312 -26.74425 -24.30403 -23.67489 -22.38312 -22.21869 -20.71276 -19.59979 -19.29046 -18.05343 -17.12698 -16.72903 -16.44728 -16.43650 -16.15607 -15.53328 -15.30746 -14.63145 -14.45767 -14.36919 -14.16382 -13.83685 -13.64915 -13.61142 -13.32322 -13.03062 -12.47491 -12.37592 -12.27792 -12.06197 -11.87610 -11.82126 -11.55247 -11.50173 -11.26539 -11.02375 -10.86654 -10.71381 -10.60780 -10.44945 -9.86970 -9.78817 -9.41192 -9.13227 -8.88678 -8.50621 -8.36068 -6.01008 -4.03986 -0.49723 2.26054 2.45401 3.03012 3.20703 3.33218 3.37823 3.40105 3.55836 3.73589 3.88891 4.13353 4.19959 4.35855 4.45481 4.49086 4.72428 4.74748 4.80127 4.92204 5.00760 5.21425 5.30586 5.34827 5.36493 5.65221 5.67375 5.78376 5.96381 6.15735 6.28710 6.38610 6.59975 6.63878 6.71554 6.91972 7.01069 7.64001 7.76259 7.92393 7.97726 8.38732 8.60108 9.02536 9.60183 11.10257 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010574 B = 0.003396 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.348012 B = 8242.627318 C =10557.016460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 2.425 3.575 3 O -0.929 6.929 4 O -0.938 6.938 5 C -0.646 4.646 6 C 0.127 3.873 7 N -0.600 5.600 8 C 0.703 3.297 9 O -0.576 6.576 10 N -0.741 5.741 11 C 0.132 3.868 12 C -0.122 4.122 13 C 0.025 3.975 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.081 3.919 23 C -0.189 4.189 24 C -0.185 4.185 25 H 0.132 0.868 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.393 0.607 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.128 0.872 41 H 0.137 0.863 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 -19.674 -16.052 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.605 3.395 3 O -0.926 6.926 4 O -0.935 6.935 5 C -0.775 4.775 6 C 0.002 3.998 7 N -0.335 5.335 8 C 0.405 3.595 9 O -0.454 6.454 10 N -0.396 5.396 11 C 0.009 3.991 12 C -0.161 4.161 13 C -0.012 4.012 14 C -0.561 4.561 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.024 4.024 23 C -0.227 4.227 24 C -0.224 4.224 25 H 0.150 0.850 26 H 0.149 0.851 27 H 0.146 0.854 28 H 0.158 0.842 29 H 0.156 0.844 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.228 0.772 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.377 -19.594 -15.730 25.696 hybrid contribution -1.222 0.869 0.029 1.499 sum -6.599 -18.726 -15.701 25.313 Atomic orbital electron populations 1.30251 1.26339 1.11642 1.12175 1.07784 0.78628 0.75904 0.77194 1.93663 1.78892 1.33885 1.86127 1.93611 1.79158 1.67193 1.53541 1.31037 1.07146 1.15088 1.24228 1.21126 0.90010 1.01278 0.87407 1.46444 1.75054 1.05429 1.06575 1.16035 0.78845 0.81394 0.83255 1.90789 1.52368 1.73014 1.29210 1.45690 1.67627 1.07439 1.18863 1.21572 1.01270 0.89627 0.86596 1.21918 1.00248 0.91980 1.01914 1.19015 0.97470 0.93064 0.91697 1.21177 1.41905 0.93563 0.99485 0.92625 1.25024 0.95288 0.99066 0.95035 1.69961 1.45216 1.33151 1.05001 0.86641 0.79137 0.84312 0.77800 1.20257 1.21302 1.20197 1.21495 1.03317 0.79289 0.98251 1.23834 0.99968 1.02047 0.96823 1.23294 0.92186 1.02535 1.04359 0.84980 0.85063 0.85357 0.84173 0.84444 0.88712 0.88074 0.77227 0.91714 0.91804 0.92548 0.92743 0.96279 0.96239 0.92887 0.85429 0.84494 0.89473 0.88904 0.88210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.07 10.62 101.05 1.07 -1.00 16 2 S 2.42 14.42 5.36 -107.50 -0.58 13.84 16 3 O -0.93 -9.68 18.10 -57.83 -1.05 -10.73 16 4 O -0.94 -8.56 18.10 -57.83 -1.05 -9.61 16 5 C -0.65 -3.37 6.01 37.16 0.22 -3.15 16 6 C 0.13 1.02 5.07 -4.04 -0.02 1.00 16 7 N -0.60 -6.56 2.84 -171.80 -0.49 -7.04 16 8 C 0.70 10.33 8.04 -86.91 -0.70 9.63 16 9 O -0.58 -10.29 12.10 5.28 0.06 -10.22 16 10 N -0.74 -10.63 5.34 -65.22 -0.35 -10.97 16 11 C 0.13 2.31 5.68 -4.04 -0.02 2.28 16 12 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 13 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 14 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 18 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.08 0.79 6.60 -67.93 -0.45 0.34 16 23 C -0.19 -2.11 9.62 -26.70 -0.26 -2.37 16 24 C -0.18 -1.98 9.88 -26.69 -0.26 -2.24 16 25 H 0.13 0.30 8.14 -51.92 -0.42 -0.13 16 26 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.13 0.16 8.14 -51.93 -0.42 -0.27 16 28 H 0.14 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.14 0.67 7.64 -51.93 -0.40 0.28 16 30 H 0.09 0.78 6.85 -51.93 -0.36 0.42 16 31 H 0.10 0.62 8.07 -51.92 -0.42 0.20 16 32 H 0.39 4.69 5.97 -40.82 -0.24 4.45 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.14 2.01 5.30 -51.95 -0.28 1.73 16 42 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 43 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 1.33 7.54 -51.93 -0.39 0.94 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -38.17 375.57 -10.29 -48.46 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.12 Total: 1.07 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -1.10 Total: -10.89 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.10 Total: -44.07 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -2.03 Total: -30.56 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 14.42 SS G_CDS: -0.58 Total: 13.84 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.17 -10.29 -48.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753607835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.597 kcal (2) G-P(sol) polarization free energy of solvation -38.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds