Wall clock time and date at job start Fri Apr 10 2020 18:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42103 * 108.58175 * 2 1 4 4 O 1.42105 * 108.58131 * 228.97638 * 2 1 3 5 5 C 1.81405 * 101.92581 * 114.48943 * 2 1 3 6 6 H 1.08993 * 109.04244 * 66.00842 * 5 2 1 7 7 C 1.54513 * 109.05251 * 307.08441 * 5 2 1 8 8 C 1.50464 * 108.84974 * 162.26505 * 7 5 2 9 9 C 1.54286 * 113.03319 * 92.15554 * 8 7 5 10 10 C 1.54062 * 112.28959 * 318.29957 * 9 8 7 11 11 N 1.44271 * 111.98281 * 318.91481 * 10 9 8 12 12 C 1.46895 * 111.00105 * 219.30717 * 11 10 9 13 13 C 1.50698 * 109.47552 * 301.96634 * 12 11 10 14 14 O 1.21275 * 120.00001 * 4.75481 * 13 12 11 15 15 N 1.34774 * 120.00224 * 184.75399 * 13 12 11 16 16 C 1.46492 * 120.00293 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47580 * 180.02562 * 16 15 13 18 18 H 1.08009 * 120.00018 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00366 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00083 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00186 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47233 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47288 * 120.00307 * 21 19 17 24 24 H 1.48504 * 109.47244 * 240.00365 * 21 19 17 25 25 C 1.45863 * 109.05829 * 185.00165 * 5 2 1 26 26 H 1.08999 * 109.47464 * 65.51452 * 1 2 3 27 27 H 1.09001 * 109.47033 * 185.51620 * 1 2 3 28 28 H 1.09000 * 109.46976 * 305.50750 * 1 2 3 29 29 H 1.08996 * 109.57281 * 282.07463 * 7 5 2 30 30 H 1.09002 * 109.57184 * 42.45874 * 7 5 2 31 31 H 1.09005 * 108.76963 * 331.23757 * 8 7 5 32 32 H 1.09000 * 108.77288 * 213.07602 * 8 7 5 33 33 H 1.09001 * 108.91740 * 197.57595 * 9 8 7 34 34 H 1.08999 * 108.91820 * 79.03045 * 9 8 7 35 35 H 1.09004 * 108.98395 * 198.26924 * 10 9 8 36 36 H 1.08999 * 108.91393 * 79.51584 * 10 9 8 37 37 H 1.09001 * 109.47016 * 61.96667 * 12 11 10 38 38 H 1.09003 * 109.47177 * 181.96273 * 12 11 10 39 39 H 0.97002 * 119.99884 * 359.97438 * 15 13 12 40 40 H 1.09006 * 109.46906 * 300.00052 * 16 15 13 41 41 H 1.09000 * 109.47616 * 59.99935 * 16 15 13 42 42 H 0.96997 * 119.99815 * 179.97438 * 20 19 17 43 43 H 1.09003 * 108.78908 * 302.75249 * 25 5 2 44 44 H 1.09002 * 108.79193 * 60.97461 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 1 1.8524 -1.7724 1.6205 7 6 1.4314 0.0445 2.7129 8 6 1.3807 -0.7961 3.9598 9 6 2.5557 -0.5216 4.9211 10 6 3.8951 -0.3630 4.1765 11 7 4.0366 -1.3232 3.1091 12 6 5.4138 -1.8288 3.0350 13 6 6.3620 -0.6758 2.8292 14 8 5.9435 0.4625 2.8380 15 7 7.6751 -0.9094 2.6352 16 6 8.5969 0.2115 2.4357 17 6 9.9952 -0.3162 2.2423 18 1 10.1789 -1.3803 2.2661 19 6 11.0399 0.5592 2.0350 20 7 10.8163 1.8550 2.0065 21 14 12.7733 -0.0949 1.7960 22 1 12.7577 -1.5778 1.8729 23 1 13.2826 0.3270 0.4665 24 1 13.6576 0.4461 2.8593 25 6 3.6310 -0.7019 1.8308 26 1 -0.3634 0.4259 -0.9352 27 1 -0.3633 -1.0229 0.0988 28 1 -0.3633 0.5969 0.8366 29 1 1.9529 0.9783 2.9230 30 1 0.4173 0.2584 2.3751 31 1 1.3992 -1.8480 3.6745 32 1 0.4456 -0.5932 4.4818 33 1 2.6382 -1.3505 5.6241 34 1 2.3505 0.3926 5.4781 35 1 4.7127 -0.4973 4.8848 36 1 3.9501 0.6422 3.7587 37 1 5.6627 -2.3425 3.9636 38 1 5.5011 -2.5245 2.2004 39 1 8.0099 -1.8198 2.6285 40 1 8.2967 0.7761 1.5529 41 1 8.5716 0.8628 3.3094 42 1 11.5514 2.4709 1.8610 43 1 4.1208 -1.2300 1.0127 44 1 3.9628 0.3364 1.8241 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769999950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:07 Heat of formation + Delta-G solvation = -100.025740 kcal Electronic energy + Delta-G solvation = -25884.095739 eV Core-core repulsion = 22157.023524 eV Total energy + Delta-G solvation = -3727.072216 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.15593 -38.08309 -37.09604 -36.13465 -34.70124 -33.97811 -32.81512 -32.37515 -30.04275 -28.84518 -27.03381 -25.13276 -25.01885 -22.56981 -21.26156 -20.04796 -19.56745 -18.94892 -17.37749 -17.17292 -16.49293 -16.20552 -15.79623 -15.67412 -15.49359 -15.04270 -14.71313 -14.45253 -14.21181 -13.97334 -13.65215 -13.48310 -13.21620 -13.04318 -12.71350 -12.56865 -12.22939 -12.14204 -12.09198 -11.98714 -11.71023 -11.41832 -11.26893 -11.12455 -10.95891 -10.93337 -10.89702 -10.72382 -10.37063 -10.33825 -10.20374 -9.75706 -9.39599 -8.75762 -8.08318 -7.92817 -6.17715 -4.25010 -0.21844 2.53722 3.22932 3.24989 3.30096 3.33099 3.41343 3.74613 3.94838 4.06667 4.15905 4.35878 4.47015 4.52118 4.73911 4.78213 4.90896 5.07559 5.15301 5.18320 5.21572 5.29844 5.34216 5.43850 5.53348 5.58629 5.64274 5.75758 5.86570 5.91260 5.99154 6.03704 6.20083 6.33801 6.89847 7.06937 7.27657 7.38903 7.49122 7.63829 7.95213 8.56568 8.74319 9.02844 9.41670 10.92416 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018252 B = 0.003201 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.725348 B = 8744.848955 C = 9638.132682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.415 3.585 3 O -0.930 6.930 4 O -0.940 6.940 5 C -0.554 4.554 6 H 0.142 0.858 7 C -0.106 4.106 8 C -0.102 4.102 9 C -0.111 4.111 10 C 0.049 3.951 11 N -0.492 5.492 12 C 0.029 3.971 13 C 0.462 3.538 14 O -0.555 6.555 15 N -0.709 5.709 16 C 0.248 3.752 17 C -0.544 4.544 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.051 3.949 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.391 0.609 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.265 0.735 43 H 0.075 0.925 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.331 -8.351 2.325 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.596 3.404 3 O -0.927 6.927 4 O -0.937 6.937 5 C -0.664 4.664 6 H 0.160 0.840 7 C -0.144 4.144 8 C -0.141 4.141 9 C -0.150 4.150 10 C -0.079 4.079 11 N -0.215 5.215 12 C -0.103 4.103 13 C 0.245 3.755 14 O -0.435 6.435 15 N -0.357 5.357 16 C 0.127 3.873 17 C -0.582 4.582 18 H 0.081 0.919 19 C -0.141 4.141 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.078 4.078 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.150 0.850 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.224 0.776 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.251 -7.453 1.728 24.477 hybrid contribution 1.227 -0.394 0.284 1.320 sum -22.024 -7.847 2.013 23.466 Atomic orbital electron populations 1.30332 1.27127 1.11559 1.11689 1.08215 0.78354 0.76180 0.77617 1.93624 1.78569 1.34194 1.86278 1.93602 1.78976 1.67185 1.53900 1.29226 1.05435 1.12523 1.19167 0.84000 1.21381 0.98714 0.99570 0.94770 1.21104 0.97738 1.00445 0.94790 1.22001 0.94268 1.01222 0.97492 1.22006 0.96518 0.95904 0.93503 1.61944 1.19611 1.36536 1.03362 1.22519 0.86727 0.96294 1.04721 1.21706 0.84283 0.91310 0.78173 1.90654 1.77046 1.23513 1.52275 1.46573 1.07400 1.11899 1.69819 1.19114 0.86588 0.84353 0.97214 1.21256 0.91847 0.93529 1.51577 0.91853 1.24964 0.99587 0.94730 0.94781 1.69986 1.32443 1.01596 1.48184 0.86355 0.83618 0.79004 0.77892 1.19621 1.20759 1.20811 1.20712 0.91125 1.02079 0.93875 0.85334 0.85291 0.85025 0.89514 0.90990 0.91157 0.92464 0.92144 0.92146 0.91862 0.91431 0.87686 0.88058 0.77625 0.95522 0.95596 0.92478 0.90626 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.43 10.01 101.05 1.01 -2.41 16 2 S 2.41 24.69 4.84 -107.50 -0.52 24.17 16 3 O -0.93 -13.67 17.96 -57.83 -1.04 -14.71 16 4 O -0.94 -12.97 18.10 -57.83 -1.05 -14.02 16 5 C -0.55 -5.22 2.37 -29.31 -0.07 -5.29 16 6 H 0.14 0.97 7.58 -51.91 -0.39 0.58 16 7 C -0.11 -0.87 4.91 -27.20 -0.13 -1.00 16 8 C -0.10 -0.82 5.42 -27.32 -0.15 -0.97 16 9 C -0.11 -1.11 6.14 -25.50 -0.16 -1.26 16 10 C 0.05 0.66 3.75 -4.67 -0.02 0.64 16 11 N -0.49 -6.35 4.45 -241.01 -1.07 -7.42 16 12 C 0.03 0.39 5.54 -4.98 -0.03 0.36 16 13 C 0.46 8.73 7.07 -10.99 -0.08 8.66 16 14 O -0.55 -12.48 12.40 5.56 0.07 -12.41 16 15 N -0.71 -14.56 5.55 -61.48 -0.34 -14.90 16 16 C 0.25 6.57 5.43 -5.20 -0.03 6.55 16 17 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 18 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -26.28 13.29 55.43 0.74 -25.54 16 21 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.05 0.68 3.35 -6.71 -0.02 0.66 16 26 H 0.13 0.60 8.14 -51.92 -0.42 0.17 16 27 H 0.13 0.39 8.14 -51.92 -0.42 -0.04 16 28 H 0.13 0.46 6.31 -51.92 -0.33 0.13 16 29 H 0.09 0.86 7.15 -51.93 -0.37 0.48 16 30 H 0.07 0.34 5.50 -51.93 -0.29 0.05 16 31 H 0.07 0.56 7.38 -51.93 -0.38 0.17 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.91 7.32 -51.93 -0.38 0.53 16 36 H 0.07 1.08 5.46 -51.93 -0.28 0.79 16 37 H 0.11 1.19 8.10 -51.93 -0.42 0.77 16 38 H 0.10 1.16 7.95 -51.93 -0.41 0.75 16 39 H 0.39 6.83 8.32 -40.82 -0.34 6.49 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.08 1.03 7.67 -51.93 -0.40 0.63 16 44 H 0.08 1.35 5.81 -51.93 -0.30 1.05 16 LS Contribution 353.61 15.07 5.33 5.33 Total: -1.00 -37.41 353.61 -9.78 -47.19 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.79 Total: 3.85 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -0.09 Total: -7.50 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.68 Total: -47.87 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -2.02 Total: -41.13 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 24.69 SS G_CDS: -0.52 Total: 24.17 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.41 -9.78 -47.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769999950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.834 kcal (2) G-P(sol) polarization free energy of solvation -37.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds