Wall clock time and date at job start Fri Apr 10 2020 18:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42103 * 108.58175 * 2 1 4 4 O 1.42105 * 108.58131 * 228.97638 * 2 1 3 5 5 C 1.81405 * 101.92581 * 114.48943 * 2 1 3 6 6 H 1.08993 * 109.04244 * 66.00842 * 5 2 1 7 7 C 1.54513 * 109.05251 * 307.08441 * 5 2 1 8 8 C 1.50464 * 108.84974 * 162.26505 * 7 5 2 9 9 C 1.54286 * 113.03319 * 92.15554 * 8 7 5 10 10 C 1.54062 * 112.28959 * 318.29957 * 9 8 7 11 11 N 1.44271 * 111.98281 * 318.91481 * 10 9 8 12 12 C 1.46895 * 111.00105 * 219.30717 * 11 10 9 13 13 C 1.50698 * 109.47552 * 301.96634 * 12 11 10 14 14 O 1.21275 * 120.00001 * 4.75481 * 13 12 11 15 15 N 1.34774 * 120.00224 * 184.75399 * 13 12 11 16 16 C 1.46492 * 120.00293 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47580 * 180.02562 * 16 15 13 18 18 H 1.08009 * 120.00018 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00366 * 179.97438 * 17 16 15 20 20 N 1.31519 * 120.00083 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00186 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47233 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47288 * 120.00307 * 21 19 17 24 24 H 1.48504 * 109.47244 * 240.00365 * 21 19 17 25 25 C 1.45863 * 109.05829 * 185.00165 * 5 2 1 26 26 H 1.08999 * 109.47464 * 65.51452 * 1 2 3 27 27 H 1.09001 * 109.47033 * 185.51620 * 1 2 3 28 28 H 1.09000 * 109.46976 * 305.50750 * 1 2 3 29 29 H 1.08996 * 109.57281 * 282.07463 * 7 5 2 30 30 H 1.09002 * 109.57184 * 42.45874 * 7 5 2 31 31 H 1.09005 * 108.76963 * 331.23757 * 8 7 5 32 32 H 1.09000 * 108.77288 * 213.07602 * 8 7 5 33 33 H 1.09001 * 108.91740 * 197.57595 * 9 8 7 34 34 H 1.08999 * 108.91820 * 79.03045 * 9 8 7 35 35 H 1.09004 * 108.98395 * 198.26924 * 10 9 8 36 36 H 1.08999 * 108.91393 * 79.51584 * 10 9 8 37 37 H 1.09001 * 109.47016 * 61.96667 * 12 11 10 38 38 H 1.09003 * 109.47177 * 181.96273 * 12 11 10 39 39 H 0.97002 * 119.99884 * 359.97438 * 15 13 12 40 40 H 1.09006 * 109.46906 * 300.00052 * 16 15 13 41 41 H 1.09000 * 109.47616 * 59.99935 * 16 15 13 42 42 H 0.96997 * 119.99815 * 179.97438 * 20 19 17 43 43 H 1.09003 * 108.78908 * 302.75249 * 25 5 2 44 44 H 1.09002 * 108.79193 * 60.97461 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 1 1.8524 -1.7724 1.6205 7 6 1.4314 0.0445 2.7129 8 6 1.3807 -0.7961 3.9598 9 6 2.5557 -0.5216 4.9211 10 6 3.8951 -0.3630 4.1765 11 7 4.0366 -1.3232 3.1091 12 6 5.4138 -1.8288 3.0350 13 6 6.3620 -0.6758 2.8292 14 8 5.9435 0.4625 2.8380 15 7 7.6751 -0.9094 2.6352 16 6 8.5969 0.2115 2.4357 17 6 9.9952 -0.3162 2.2423 18 1 10.1789 -1.3803 2.2661 19 6 11.0399 0.5592 2.0350 20 7 10.8163 1.8550 2.0065 21 14 12.7733 -0.0949 1.7960 22 1 12.7577 -1.5778 1.8729 23 1 13.2826 0.3270 0.4665 24 1 13.6576 0.4461 2.8593 25 6 3.6310 -0.7019 1.8308 26 1 -0.3634 0.4259 -0.9352 27 1 -0.3633 -1.0229 0.0988 28 1 -0.3633 0.5969 0.8366 29 1 1.9529 0.9783 2.9230 30 1 0.4173 0.2584 2.3751 31 1 1.3992 -1.8480 3.6745 32 1 0.4456 -0.5932 4.4818 33 1 2.6382 -1.3505 5.6241 34 1 2.3505 0.3926 5.4781 35 1 4.7127 -0.4973 4.8848 36 1 3.9501 0.6422 3.7587 37 1 5.6627 -2.3425 3.9636 38 1 5.5011 -2.5245 2.2004 39 1 8.0099 -1.8198 2.6285 40 1 8.2967 0.7761 1.5529 41 1 8.5716 0.8628 3.3094 42 1 11.5514 2.4709 1.8610 43 1 4.1208 -1.2300 1.0127 44 1 3.9628 0.3364 1.8241 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769999950.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:06 Heat of formation + Delta-G solvation = -133.061168 kcal Electronic energy + Delta-G solvation = -25885.528263 eV Core-core repulsion = 22157.023524 eV Total energy + Delta-G solvation = -3728.504739 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.45425 -39.37488 -38.03332 -37.06224 -36.28419 -35.31073 -34.41094 -33.68257 -30.75821 -30.13916 -28.63402 -26.28907 -25.95552 -24.46022 -22.33667 -21.46265 -20.67392 -19.77868 -18.95783 -18.22540 -17.64466 -17.40341 -17.13489 -16.94824 -16.60826 -16.52490 -16.01704 -15.80916 -15.32481 -15.18194 -14.66887 -14.35804 -14.11869 -14.02235 -13.94477 -13.86234 -13.68936 -13.38965 -13.17289 -13.05325 -12.94248 -12.83315 -12.70099 -12.45652 -12.26896 -12.16021 -11.98223 -11.75203 -11.51126 -11.47850 -11.30949 -11.18217 -10.97854 -10.85349 -9.87167 -9.39059 -8.33081 -6.50556 -0.96590 1.40051 1.41626 1.55198 1.67803 1.83429 2.29185 2.54791 2.60025 2.96961 3.01647 3.03341 3.43679 3.70812 3.91128 4.01129 4.11191 4.12967 4.14299 4.22661 4.30686 4.36184 4.46390 4.51539 4.56591 4.77790 4.89677 4.95998 5.00460 5.05188 5.09854 5.16993 5.17655 5.35288 5.40026 5.45298 5.53584 5.62522 5.79709 5.81214 5.95465 6.61126 6.84560 7.19270 7.44044 8.79253 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018252 B = 0.003201 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.725348 B = 8744.848955 C = 9638.132682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.623 4.623 2 S 2.395 3.605 3 O -0.994 6.994 4 O -0.988 6.988 5 C -0.545 4.545 6 H 0.180 0.820 7 C -0.111 4.111 8 C -0.101 4.101 9 C -0.109 4.109 10 C 0.050 3.950 11 N -0.472 5.472 12 C 0.037 3.963 13 C 0.456 3.544 14 O -0.596 6.596 15 N -0.706 5.706 16 C 0.267 3.733 17 C -0.556 4.556 18 H 0.085 0.915 19 C 0.001 3.999 20 N -0.932 5.932 21 Si 0.987 3.013 22 H -0.251 1.251 23 H -0.280 1.280 24 H -0.278 1.278 25 C 0.048 3.952 26 H 0.141 0.859 27 H 0.167 0.833 28 H 0.159 0.841 29 H 0.057 0.943 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.029 0.971 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.409 0.591 40 H -0.020 1.020 41 H -0.015 1.015 42 H 0.269 0.731 43 H 0.067 0.933 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.809 -11.819 3.114 28.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.777 4.777 2 S 2.584 3.416 3 O -0.991 6.991 4 O -0.985 6.985 5 C -0.655 4.655 6 H 0.198 0.802 7 C -0.149 4.149 8 C -0.139 4.139 9 C -0.147 4.147 10 C -0.079 4.079 11 N -0.193 5.193 12 C -0.095 4.095 13 C 0.242 3.758 14 O -0.478 6.478 15 N -0.357 5.357 16 C 0.143 3.857 17 C -0.593 4.593 18 H 0.103 0.897 19 C -0.199 4.199 20 N -0.571 5.571 21 Si 0.810 3.190 22 H -0.174 1.174 23 H -0.205 1.205 24 H -0.203 1.203 25 C -0.080 4.080 26 H 0.159 0.841 27 H 0.185 0.815 28 H 0.177 0.823 29 H 0.076 0.924 30 H 0.135 0.865 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.245 0.755 40 H -0.002 1.002 41 H 0.003 0.997 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -25.708 -10.963 2.516 28.061 hybrid contribution 1.874 0.748 0.072 2.019 sum -23.834 -10.216 2.588 26.060 Atomic orbital electron populations 1.30040 1.19111 1.14862 1.13727 1.08315 0.81487 0.74396 0.77370 1.93551 1.81586 1.36942 1.87025 1.93536 1.81690 1.67527 1.55753 1.29116 1.02720 1.14887 1.18753 0.80230 1.21534 1.00489 0.98183 0.94702 1.21143 0.97745 1.00893 0.94135 1.21993 0.92915 1.01948 0.97842 1.22000 0.98570 0.94061 0.93234 1.62173 1.18564 1.35672 1.02929 1.22759 0.85196 0.94047 1.07458 1.22942 0.84132 0.92522 0.76213 1.90662 1.77617 1.26059 1.53454 1.46327 1.07524 1.11230 1.70589 1.18493 0.88328 0.85475 0.93360 1.21659 0.91842 0.94661 1.51176 0.89668 1.26127 1.04892 0.94798 0.94036 1.70157 1.34176 1.03448 1.49334 0.85076 0.76952 0.79295 0.77670 1.17426 1.20533 1.20327 1.20712 0.94183 0.99305 0.93842 0.84070 0.81506 0.82266 0.92368 0.86479 0.89989 0.89543 0.90777 0.92004 0.93430 0.95279 0.84428 0.85184 0.75463 1.00166 0.99692 0.92263 0.91468 0.94591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -3.72 10.01 113.37 1.13 -2.59 16 2 S 2.40 48.76 4.84 -56.49 -0.27 48.49 16 3 O -0.99 -31.70 17.96 -127.37 -2.29 -33.99 16 4 O -0.99 -27.98 18.10 -127.37 -2.31 -30.28 16 5 C -0.54 -9.52 2.37 28.92 0.07 -9.45 16 6 H 0.18 1.76 7.58 -2.40 -0.02 1.74 16 7 C -0.11 -1.55 4.91 30.29 0.15 -1.40 16 8 C -0.10 -1.24 5.42 30.21 0.16 -1.07 16 9 C -0.11 -1.97 6.14 31.39 0.19 -1.78 16 10 C 0.05 1.38 3.75 87.15 0.33 1.71 16 11 N -0.47 -11.94 4.45 -916.41 -4.08 -16.02 16 12 C 0.04 0.96 5.54 85.56 0.47 1.43 16 13 C 0.46 18.13 7.07 87.66 0.62 18.75 16 14 O -0.60 -29.32 12.40 -3.02 -0.04 -29.36 16 15 N -0.71 -30.23 5.55 -466.81 -2.59 -32.82 16 16 C 0.27 15.10 5.43 85.63 0.46 15.57 16 17 C -0.56 -30.93 9.28 25.60 0.24 -30.69 16 18 H 0.09 4.27 7.60 -2.91 -0.02 4.24 16 19 C 0.00 0.05 5.46 84.65 0.46 0.51 16 20 N -0.93 -57.85 13.29 21.45 0.28 -57.56 16 21 Si 0.99 43.24 29.54 68.60 2.03 45.26 16 22 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 C 0.05 1.35 3.35 83.94 0.28 1.63 16 26 H 0.14 0.72 8.14 -2.39 -0.02 0.71 16 27 H 0.17 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.16 0.19 6.31 -2.39 -0.02 0.17 16 29 H 0.06 1.18 7.15 -2.39 -0.02 1.16 16 30 H 0.12 0.54 5.50 -2.39 -0.01 0.53 16 31 H 0.08 0.87 7.38 -2.38 -0.02 0.85 16 32 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 35 H 0.05 1.41 7.32 -2.38 -0.02 1.40 16 36 H 0.03 1.02 5.46 -2.39 -0.01 1.01 16 37 H 0.14 2.76 8.10 -2.39 -0.02 2.74 16 38 H 0.13 2.71 7.95 -2.39 -0.02 2.69 16 39 H 0.41 14.24 8.32 -92.71 -0.77 13.46 16 40 H -0.02 -1.27 8.14 -2.38 -0.02 -1.29 16 41 H -0.01 -0.95 8.14 -2.39 -0.02 -0.97 16 42 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 43 H 0.07 1.93 7.67 -2.39 -0.02 1.91 16 44 H 0.04 1.34 5.81 -2.39 -0.01 1.33 16 Total: -1.00 -92.01 353.61 -4.45 -96.46 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.24 Total: 17.21 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 4.57 Total: -7.38 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -6.38 Total: -106.40 kcal Atomic # 8 Polarization: -89.00 SS G_CDS: -4.63 Total: -93.63 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 48.76 SS G_CDS: -0.27 Total: 48.49 kcal Total: -92.01 -4.45 -96.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769999950.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.602 kcal (2) G-P(sol) polarization free energy of solvation -92.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds