Wall clock time and date at job start Fri Apr 10 2020 18:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34638 * 117.00194 * 2 1 4 4 O 1.21520 * 119.99788 * 359.97438 * 3 2 1 5 5 N 1.34767 * 120.00375 * 179.97438 * 3 2 1 6 6 C 1.47583 * 134.49354 * 180.02562 * 5 3 2 7 7 C 1.53947 * 86.11812 * 155.35882 * 6 5 3 8 8 N 1.46503 * 113.74220 * 137.95053 * 7 6 5 9 9 C 1.34777 * 120.00051 * 156.92166 * 8 7 6 10 10 O 1.21283 * 119.99353 * 0.02562 * 9 8 7 11 11 C 1.50692 * 119.99931 * 180.02562 * 9 8 7 12 12 C 1.50703 * 109.47000 * 180.02562 * 11 9 8 13 13 C 1.37645 * 120.13007 * 265.30719 * 12 11 9 14 14 C 1.38606 * 120.24649 * 180.32491 * 13 12 11 15 15 C 1.38653 * 120.50471 * 359.65965 * 14 13 12 16 16 C 1.37600 * 120.24898 * 0.02562 * 15 14 13 17 17 C 1.40696 * 120.12867 * 84.99790 * 12 11 9 18 18 C 1.41400 * 120.24530 * 359.97438 * 17 12 11 19 19 H 1.08003 * 119.99719 * 25.87056 * 18 17 12 20 20 C 1.39942 * 120.00205 * 205.88123 * 18 17 12 21 21 N 1.30821 * 119.99968 * 16.29869 * 20 18 17 22 22 Si 1.86803 * 120.00009 * 196.30797 * 20 18 17 23 23 H 1.48496 * 109.47194 * 265.18190 * 22 20 18 24 24 H 1.48505 * 109.46937 * 25.18007 * 22 20 18 25 25 H 1.48498 * 109.47234 * 145.18150 * 22 20 18 26 26 C 1.47817 * 134.45794 * 359.86634 * 5 3 2 27 27 H 1.08998 * 109.47230 * 60.00304 * 1 2 3 28 28 H 1.09004 * 109.46794 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46987 * 299.99715 * 1 2 3 30 30 H 1.08999 * 113.77457 * 41.05655 * 6 5 3 31 31 H 1.09008 * 113.76955 * 269.65831 * 6 5 3 32 32 H 1.08997 * 113.73721 * 269.15261 * 7 6 5 33 33 H 0.97002 * 120.00149 * 336.93121 * 8 7 6 34 34 H 1.09000 * 109.47297 * 60.00731 * 11 9 8 35 35 H 1.08997 * 109.47185 * 300.00030 * 11 9 8 36 36 H 1.07994 * 119.87429 * 0.02562 * 13 12 11 37 37 H 1.08002 * 119.74758 * 179.69746 * 14 13 12 38 38 H 1.07998 * 119.87893 * 180.02562 * 15 14 13 39 39 H 1.07997 * 120.12664 * 180.02562 * 16 15 14 40 40 H 0.97002 * 120.00001 * 180.02562 * 21 20 18 41 41 H 1.09003 * 113.76572 * 90.38166 * 26 5 3 42 42 H 1.09002 * 113.83277 * 318.92022 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4014 2.2188 -0.0005 5 7 3.4091 1.2702 0.0005 6 6 4.3869 2.3757 0.0012 7 6 5.3633 1.3725 0.6417 8 7 6.7223 1.4439 0.0993 9 6 7.7639 0.9996 0.8303 10 8 7.5758 0.5403 1.9369 11 6 9.1618 1.0735 0.2726 12 6 10.1346 0.5165 1.2799 13 6 10.7850 1.3599 2.1518 14 6 11.6853 0.8509 3.0747 15 6 11.9360 -0.5114 3.1359 16 6 11.2924 -1.3739 2.2784 17 6 10.3765 -0.8683 1.3370 18 6 9.7089 -1.7452 0.4511 19 1 9.3579 -1.3836 -0.5041 20 6 9.5027 -3.0814 0.8122 21 7 9.6283 -3.4482 2.0617 22 14 9.0483 -4.3413 -0.4899 23 1 7.5718 -4.4925 -0.5386 24 1 9.5431 -3.8854 -1.8138 25 1 9.6687 -5.6476 -0.1526 26 6 4.4982 0.2708 0.0036 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.1143 3.2030 0.6564 31 1 4.6828 2.7011 -0.9963 32 1 5.3401 1.3724 1.7314 33 1 6.8727 1.8110 -0.7859 34 1 9.4137 2.1124 0.0598 35 1 9.2176 0.4905 -0.6467 36 1 10.5969 2.4226 2.1134 37 1 12.1948 1.5205 3.7517 38 1 12.6391 -0.8970 3.8592 39 1 11.4889 -2.4346 2.3280 40 1 9.4857 -4.3744 2.3119 41 1 4.8269 -0.0238 -0.9930 42 1 4.3142 -0.5791 0.6609 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777420767.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:12 Heat of formation + Delta-G solvation = -54.757996 kcal Electronic energy + Delta-G solvation = -26070.354099 eV Core-core repulsion = 22209.800888 eV Total energy + Delta-G solvation = -3860.553210 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.85923 -39.60077 -38.44654 -37.18018 -36.27059 -33.59551 -33.52727 -31.71454 -29.66587 -29.41543 -27.44802 -26.55202 -26.42170 -24.97911 -22.36164 -20.94180 -20.60474 -20.32001 -19.29662 -18.19294 -17.24084 -17.19388 -17.02025 -16.40272 -15.98461 -15.45466 -14.95837 -14.64201 -14.45417 -14.05009 -13.87242 -13.54547 -13.34274 -13.16909 -12.91758 -12.86081 -12.57641 -12.22620 -12.17496 -11.76904 -11.51439 -11.46091 -11.14097 -11.10693 -10.96544 -10.91721 -10.75338 -10.69749 -10.40999 -9.48403 -9.35024 -9.18511 -9.13262 -9.08614 -8.83061 -7.31800 -7.29488 -6.69892 -4.31379 1.75052 2.62668 2.79840 2.96595 3.07127 3.09775 3.26848 3.27899 3.51835 3.68548 3.93892 4.32645 4.65219 4.69433 4.91103 4.92927 4.99893 5.09565 5.19136 5.31295 5.34384 5.44645 5.55689 5.75485 5.89476 5.97337 6.11574 6.15445 6.29152 6.36629 6.52972 6.67294 6.77569 7.11987 7.29420 7.37690 7.42921 7.64392 7.83762 7.94197 8.04556 8.06079 8.13980 8.32882 8.65560 8.84888 8.92198 9.02140 10.24947 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013405 B = 0.003490 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.320940 B = 8021.957502 C = 9518.439036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.368 6.368 3 C 0.674 3.326 4 O -0.576 6.576 5 N -0.630 5.630 6 C 0.125 3.875 7 C 0.121 3.879 8 N -0.736 5.736 9 C 0.518 3.482 10 O -0.505 6.505 11 C -0.067 4.067 12 C -0.185 4.185 13 C -0.080 4.080 14 C -0.242 4.242 15 C -0.105 4.105 16 C -0.162 4.162 17 C 0.131 3.869 18 C -0.460 4.460 19 H 0.075 0.925 20 C 0.079 3.921 21 N -0.789 5.789 22 Si 0.900 3.100 23 H -0.272 1.272 24 H -0.261 1.261 25 H -0.276 1.276 26 C 0.092 3.908 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.399 0.601 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.116 0.884 40 H 0.279 0.721 41 H 0.093 0.907 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.393 5.963 -7.186 13.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.281 6.281 3 C 0.429 3.571 4 O -0.466 6.466 5 N -0.373 5.373 6 C 0.003 3.997 7 C 0.013 3.987 8 N -0.391 5.391 9 C 0.306 3.694 10 O -0.376 6.376 11 C -0.107 4.107 12 C -0.187 4.187 13 C -0.098 4.098 14 C -0.261 4.261 15 C -0.123 4.123 16 C -0.182 4.182 17 C 0.128 3.872 18 C -0.490 4.490 19 H 0.093 0.907 20 C -0.139 4.139 21 N -0.414 5.414 22 Si 0.725 3.275 23 H -0.197 1.197 24 H -0.185 1.185 25 H -0.201 1.201 26 C -0.032 4.032 27 H 0.081 0.919 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.146 0.854 33 H 0.233 0.767 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.037 5.660 -6.176 13.856 hybrid contribution -0.549 -0.556 -0.939 1.222 sum -11.586 5.104 -7.116 14.523 Atomic orbital electron populations 1.23202 0.74432 1.03500 1.02630 1.86282 1.24011 1.30864 1.86956 1.17450 0.81461 0.82146 0.75995 1.90995 1.63661 1.35181 1.56717 1.48305 1.00651 1.12383 1.75976 1.23575 0.82938 0.91524 1.01667 1.22779 0.81237 0.93861 1.00799 1.46041 1.05330 1.67012 1.20743 1.21235 0.86630 0.76090 0.85473 1.90728 1.85263 1.41706 1.19944 1.20248 0.89812 1.00863 0.99793 1.18973 1.03128 0.94313 1.02242 1.20292 0.97052 0.96626 0.95831 1.20302 1.06622 0.94871 1.04352 1.20682 0.99420 0.93621 0.98624 1.21284 0.98497 0.99070 0.99307 1.17327 0.88846 0.90237 0.90766 1.19438 1.33136 0.93621 1.02801 0.90701 1.25833 0.93304 0.99365 0.95395 1.69837 1.35892 1.18769 1.16902 0.86436 0.79188 0.79979 0.81921 1.19711 1.18484 1.20095 1.23947 0.82438 0.94706 1.02126 0.91937 0.87918 0.91844 0.88876 0.88937 0.85429 0.76711 0.90580 0.88867 0.89745 0.89704 0.89637 0.86606 0.91047 0.88869 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.50 10.56 101.05 1.07 1.57 16 2 O -0.37 -4.69 10.55 -40.32 -0.43 -5.11 16 3 C 0.67 9.61 8.92 54.05 0.48 10.09 16 4 O -0.58 -9.52 16.86 -19.29 -0.33 -9.85 16 5 N -0.63 -7.80 3.61 -184.14 -0.67 -8.46 16 6 C 0.12 1.22 8.59 -2.96 -0.03 1.20 16 7 C 0.12 1.43 4.40 -70.15 -0.31 1.12 16 8 N -0.74 -9.10 5.37 -55.35 -0.30 -9.40 16 9 C 0.52 9.30 7.82 -10.99 -0.09 9.21 16 10 O -0.50 -11.76 15.66 5.56 0.09 -11.68 16 11 C -0.07 -1.20 5.35 -29.04 -0.16 -1.35 16 12 C -0.18 -4.24 4.43 -103.91 -0.46 -4.70 16 13 C -0.08 -1.78 9.66 -39.66 -0.38 -2.16 16 14 C -0.24 -5.52 10.05 -39.29 -0.39 -5.91 16 15 C -0.10 -2.52 10.02 -39.66 -0.40 -2.91 16 16 C -0.16 -4.24 8.68 -38.87 -0.34 -4.58 16 17 C 0.13 3.37 5.56 -106.82 -0.59 2.78 16 18 C -0.46 -11.59 8.46 -37.74 -0.32 -11.91 16 19 H 0.07 1.75 6.36 -52.48 -0.33 1.42 16 20 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 21 N -0.79 -20.57 10.98 55.55 0.61 -19.96 16 22 Si 0.90 18.27 29.59 -169.99 -5.03 13.24 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 24 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 25 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 26 C 0.09 1.08 8.69 -2.85 -0.02 1.05 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 0.69 8.11 -51.92 -0.42 0.27 16 32 H 0.13 1.78 7.51 -51.93 -0.39 1.39 16 33 H 0.40 3.48 8.71 -40.82 -0.36 3.12 16 34 H 0.08 1.09 8.06 -51.93 -0.42 0.68 16 35 H 0.09 1.57 6.48 -51.93 -0.34 1.23 16 36 H 0.08 1.64 8.06 -52.49 -0.42 1.21 16 37 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.12 3.12 6.23 -52.49 -0.33 2.79 16 40 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 363.07 15.07 5.47 5.47 Total: -1.00 -33.93 363.07 -8.12 -42.05 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -5.52 Total: 8.35 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -2.03 Total: -4.65 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: -0.35 Total: -37.82 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.66 Total: -26.64 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.93 -8.12 -42.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777420767.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.705 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds