Wall clock time and date at job start Fri Apr 10 2020 18:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81393 * 107.16584 * 2 1 4 4 O 1.42101 * 113.54119 * 233.80634 * 2 1 3 5 5 N 1.49353 * 107.52327 * 115.34294 * 2 1 3 6 6 C 1.32414 * 119.99793 * 180.02562 * 5 2 1 7 7 O 1.21544 * 120.00468 * 359.97438 * 6 5 2 8 8 C 1.50702 * 119.99942 * 179.97438 * 6 5 2 9 9 H 1.09009 * 110.32837 * 57.74826 * 8 6 5 10 10 C 1.55373 * 110.34954 * 295.41460 * 8 6 5 11 11 C 1.55150 * 101.43799 * 204.11233 * 10 8 6 12 12 C 1.54318 * 103.17244 * 35.64638 * 11 10 8 13 13 N 1.47442 * 107.23477 * 337.62548 * 12 11 10 14 14 C 1.46901 * 110.99958 * 236.74234 * 13 12 11 15 15 C 1.53001 * 109.47173 * 176.84105 * 14 13 12 16 16 O 1.42902 * 109.46863 * 67.01489 * 15 14 13 17 17 C 1.42901 * 113.99820 * 180.02562 * 16 15 14 18 18 C 1.50704 * 109.47076 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99614 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99715 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00254 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99560 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47090 * 60.00378 * 22 20 18 24 24 H 1.48500 * 109.47091 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47400 * 300.00358 * 22 20 18 26 26 H 1.08998 * 109.47236 * 304.65732 * 1 2 3 27 27 H 1.09002 * 109.47771 * 64.66201 * 1 2 3 28 28 H 1.09005 * 109.47391 * 184.65340 * 1 2 3 29 29 H 1.08999 * 109.47333 * 173.79971 * 3 2 1 30 30 H 1.08997 * 109.47759 * 293.80305 * 3 2 1 31 31 H 1.09005 * 109.47292 * 53.80229 * 3 2 1 32 32 H 1.09001 * 111.17407 * 86.05890 * 10 8 6 33 33 H 1.08995 * 111.00792 * 322.09548 * 10 8 6 34 34 H 1.08996 * 110.70443 * 277.17395 * 11 10 8 35 35 H 1.08996 * 110.70358 * 154.11023 * 11 10 8 36 36 H 1.08997 * 109.89158 * 97.03445 * 12 11 10 37 37 H 1.09007 * 109.88134 * 218.22195 * 12 11 10 38 38 H 1.08993 * 109.47613 * 296.84165 * 14 13 12 39 39 H 1.09002 * 109.46671 * 56.84552 * 14 13 12 40 40 H 1.08998 * 109.47443 * 187.01428 * 15 14 13 41 41 H 1.09008 * 109.47179 * 307.01658 * 15 14 13 42 42 H 1.09000 * 109.46747 * 299.99797 * 17 16 15 43 43 H 1.09004 * 109.47696 * 59.99571 * 17 16 15 44 44 H 0.97001 * 120.00095 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.3493 1.7331 0.0000 4 8 2.3815 -0.7693 -1.0514 5 7 2.2637 -0.6096 1.2872 6 6 3.5565 -0.7316 1.5459 7 8 4.3774 -0.3479 0.7357 8 6 4.0103 -1.3462 2.8449 9 1 3.6045 -2.3524 2.9499 10 6 3.5764 -0.4579 4.0436 11 6 4.6150 -0.8666 5.1212 12 6 5.9001 -1.1019 4.2998 13 7 5.4869 -1.3772 2.9115 14 6 6.0075 -2.6726 2.4544 15 6 5.4942 -2.9587 1.0417 16 8 6.0688 -2.0227 0.1275 17 6 5.6520 -2.2029 -1.2274 18 6 6.3158 -1.1681 -2.0991 19 1 6.9883 -0.4450 -1.6619 20 6 6.0644 -1.1447 -3.4545 21 7 5.2450 -2.0250 -3.9867 22 14 6.8867 0.1383 -4.5348 23 1 8.3615 -0.0114 -4.4460 24 1 6.4537 -0.0490 -5.9429 25 1 6.4983 1.4956 -4.0744 26 1 -0.3633 0.5844 0.8453 27 1 -0.3635 0.4398 -0.9288 28 1 -0.3634 -1.0243 0.0834 29 1 3.4327 1.7788 0.1110 30 1 2.0603 2.2028 -0.9402 31 1 1.8767 2.2595 0.8293 32 1 2.5636 -0.6992 4.3661 33 1 3.6646 0.6003 3.7978 34 1 4.3069 -1.7824 5.6256 35 1 4.7601 -0.0616 5.8415 36 1 6.5278 -0.2113 4.3302 37 1 6.4452 -1.9564 4.7009 38 1 7.0970 -2.6439 2.4462 39 1 5.6698 -3.4586 3.1298 40 1 5.7760 -3.9706 0.7507 41 1 4.4084 -2.8646 1.0237 42 1 5.9368 -3.1992 -1.5657 43 1 4.5694 -2.0929 -1.2923 44 1 5.0685 -2.0088 -4.9404 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852169506.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:20 Heat of formation + Delta-G solvation = -43.401495 kcal Electronic energy + Delta-G solvation = -27044.598339 eV Core-core repulsion = 23319.981535 eV Total energy + Delta-G solvation = -3724.616804 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.78006 -37.66187 -36.01491 -35.87432 -32.81875 -32.48904 -31.78791 -30.08656 -29.33182 -29.02172 -27.86124 -26.16699 -23.32588 -21.90657 -21.47555 -20.93912 -19.44416 -17.68193 -16.77914 -16.23809 -15.94796 -15.76797 -15.56801 -15.18515 -15.08417 -14.42067 -13.97931 -13.85119 -13.67759 -13.57274 -13.41139 -13.27382 -13.07521 -12.94976 -12.64594 -12.32175 -12.12474 -11.97373 -11.59380 -11.26490 -11.10568 -11.09830 -10.85472 -10.74949 -10.63761 -10.55620 -10.39589 -10.08487 -9.61589 -9.52139 -9.06738 -8.97849 -8.64693 -8.37502 -7.82536 -7.59695 -5.72685 -3.68673 -0.47732 2.58073 3.16544 3.45975 3.49720 3.50302 3.56200 4.13772 4.25992 4.46764 4.63210 4.63831 4.75867 4.87685 4.92195 5.02183 5.05475 5.24937 5.26308 5.46080 5.52332 5.62684 5.63009 5.75911 5.82910 5.85435 5.90915 6.01116 6.04041 6.17962 6.25908 6.33890 6.42548 6.64145 7.09191 7.35857 7.47199 7.62894 8.08502 8.17516 8.63951 8.89410 9.11767 9.46121 9.91635 11.39737 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011524 B = 0.006118 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.040838 B = 4575.266912 C = 6188.585131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.547 4.547 2 S 2.289 3.711 3 C -0.629 4.629 4 O -0.884 6.884 5 N -1.138 6.138 6 C 0.530 3.470 7 O -0.483 6.483 8 C 0.088 3.912 9 H 0.072 0.928 10 C -0.104 4.104 11 C -0.144 4.144 12 C 0.045 3.955 13 N -0.501 5.501 14 C 0.061 3.939 15 C 0.066 3.934 16 O -0.359 6.359 17 C 0.198 3.802 18 C -0.485 4.485 19 H 0.060 0.940 20 C 0.052 3.948 21 N -0.900 5.900 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.279 1.279 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.035 0.965 40 H 0.029 0.971 41 H 0.028 0.972 42 H -0.015 1.015 43 H 0.021 0.979 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.556 5.581 16.964 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.704 4.704 2 S 2.484 3.516 3 C -0.783 4.783 4 O -0.869 6.869 5 N -1.051 6.051 6 C 0.313 3.687 7 O -0.354 6.354 8 C -0.027 4.027 9 H 0.090 0.910 10 C -0.143 4.143 11 C -0.182 4.182 12 C -0.083 4.083 13 N -0.226 5.226 14 C -0.067 4.067 15 C -0.012 4.012 16 O -0.277 6.277 17 C 0.124 3.876 18 C -0.524 4.524 19 H 0.079 0.921 20 C -0.147 4.147 21 N -0.541 5.541 22 Si 0.726 3.274 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.205 1.205 26 H 0.156 0.844 27 H 0.151 0.849 28 H 0.162 0.838 29 H 0.165 0.835 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.003 0.997 43 H 0.039 0.961 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.769 5.568 15.789 21.056 hybrid contribution -0.187 0.317 -0.391 0.536 sum -12.956 5.884 15.399 20.967 Atomic orbital electron populations 1.29062 1.16610 1.13153 1.11573 1.13136 0.80749 0.80212 0.77550 1.30120 1.14889 1.23390 1.09938 1.93733 1.70704 1.61892 1.60601 1.70630 1.30715 1.57521 1.46216 1.19411 0.81752 0.79207 0.88339 1.91158 1.55032 1.44743 1.44495 1.22128 0.88432 0.98943 0.93164 0.91009 1.22571 0.98770 0.99892 0.93048 1.22826 0.95934 1.01461 0.97997 1.22826 0.96832 1.01357 0.87311 1.63084 1.07644 1.31926 1.19954 1.22320 1.01045 0.88335 0.95005 1.22182 0.96383 0.92688 0.89959 1.87989 1.68289 1.52898 1.18569 1.20098 0.95895 0.94856 0.76776 1.20962 1.25717 1.14377 0.91330 0.92145 1.24875 0.95810 0.96360 0.97693 1.69992 1.36410 1.35977 1.11672 0.86570 0.79750 0.82017 0.79037 1.20303 1.21491 1.20463 0.84399 0.84885 0.83790 0.83508 0.86245 0.86001 0.90108 0.90827 0.91585 0.90857 0.90536 0.92881 0.89919 0.94735 0.95252 0.95404 0.99708 0.96136 0.93348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.55 -3.23 10.89 101.05 1.10 -2.13 16 2 S 2.29 31.03 4.53 -107.50 -0.49 30.55 16 3 C -0.63 -7.08 10.55 101.05 1.07 -6.01 16 4 O -0.88 -19.45 16.65 -51.79 -0.86 -20.31 16 5 N -1.14 -17.87 10.17 30.50 0.31 -17.56 16 6 C 0.53 10.42 5.11 -12.03 -0.06 10.36 16 7 O -0.48 -11.84 11.00 -24.16 -0.27 -12.10 16 8 C 0.09 1.47 2.29 -67.09 -0.15 1.32 16 9 H 0.07 1.17 7.47 -51.92 -0.39 0.78 16 10 C -0.10 -1.29 6.50 -24.33 -0.16 -1.45 16 11 C -0.14 -1.52 6.93 -24.90 -0.17 -1.70 16 12 C 0.04 0.59 6.90 -2.84 -0.02 0.57 16 13 N -0.50 -8.94 4.47 -224.45 -1.00 -9.94 16 14 C 0.06 1.11 4.95 -3.82 -0.02 1.09 16 15 C 0.07 1.52 5.26 37.16 0.20 1.71 16 16 O -0.36 -10.23 8.16 -57.76 -0.47 -10.70 16 17 C 0.20 6.36 5.19 36.01 0.19 6.54 16 18 C -0.49 -16.19 9.43 -34.44 -0.32 -16.52 16 19 H 0.06 2.02 7.81 -52.49 -0.41 1.61 16 20 C 0.05 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.90 -29.92 13.29 55.43 0.74 -29.18 16 22 Si 0.90 24.06 29.54 -169.99 -5.02 19.04 16 23 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 26 H 0.14 0.36 8.14 -51.92 -0.42 -0.06 16 27 H 0.13 0.48 8.14 -51.92 -0.42 0.05 16 28 H 0.14 0.82 8.14 -51.92 -0.42 0.40 16 29 H 0.15 2.27 7.07 -51.92 -0.37 1.90 16 30 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.12 0.85 8.14 -51.92 -0.42 0.43 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.63 7.58 -51.92 -0.39 0.24 16 38 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.03 0.66 5.56 -51.92 -0.29 0.37 16 42 H -0.01 -0.49 8.14 -51.93 -0.42 -0.91 16 43 H 0.02 0.72 7.42 -51.93 -0.39 0.33 16 44 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 LS Contribution 363.68 15.07 5.48 5.48 Total: -1.00 -46.07 363.68 -7.32 -53.39 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -7.28 Total: -4.04 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 1.54 Total: -4.63 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.04 Total: -56.68 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -1.60 Total: -43.11 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -5.02 Total: 19.04 kcal Atomic # 16 Polarization: 31.03 SS G_CDS: -0.49 Total: 30.55 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -46.07 -7.32 -53.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852169506.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.992 kcal (2) G-P(sol) polarization free energy of solvation -46.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds