Wall clock time and date at job start Fri Apr 10 2020 18:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42094 * 108.57856 * 2 1 4 4 O 1.42106 * 108.57724 * 228.97306 * 2 1 3 5 5 C 1.81397 * 101.92008 * 114.49013 * 2 1 3 6 6 C 1.52996 * 109.47581 * 54.37985 * 5 2 1 7 7 N 1.46506 * 109.47029 * 61.49688 * 6 5 2 8 8 C 1.34777 * 119.99923 * 185.41299 * 7 6 5 9 9 O 1.21587 * 120.00070 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99994 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00120 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47244 * 180.02562 * 11 10 8 13 13 H 1.07996 * 120.00247 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00217 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00023 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00338 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.46695 * 60.00201 * 16 14 12 18 18 H 1.48494 * 109.47077 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.46989 * 300.00491 * 16 14 12 20 20 C 1.52999 * 109.47267 * 294.37759 * 5 2 1 21 21 C 1.52997 * 109.47614 * 180.02562 * 20 5 2 22 22 C 1.53006 * 109.47069 * 59.99851 * 21 20 5 23 23 C 1.52999 * 109.47024 * 300.00509 * 22 21 20 24 24 C 1.52996 * 109.47256 * 59.99942 * 23 22 21 25 25 H 1.08991 * 109.47033 * 302.58069 * 1 2 3 26 26 H 1.08995 * 109.46842 * 62.58618 * 1 2 3 27 27 H 1.09002 * 109.46737 * 182.57853 * 1 2 3 28 28 H 1.08997 * 109.47265 * 181.49664 * 6 5 2 29 29 H 1.09001 * 109.46951 * 301.50159 * 6 5 2 30 30 H 0.96995 * 120.00149 * 5.40834 * 7 6 5 31 31 H 0.97001 * 119.99985 * 0.02562 * 10 8 7 32 32 H 1.09000 * 109.47213 * 300.00170 * 11 10 8 33 33 H 1.09004 * 109.47106 * 59.99892 * 11 10 8 34 34 H 0.96996 * 120.00673 * 179.97438 * 15 14 12 35 35 H 1.09005 * 109.46744 * 59.99756 * 20 5 2 36 36 H 1.09002 * 109.46967 * 300.00301 * 20 5 2 37 37 H 1.09002 * 109.47024 * 300.00050 * 21 20 5 38 38 H 1.08996 * 109.47249 * 179.97438 * 21 20 5 39 39 H 1.08998 * 109.46568 * 60.00106 * 22 21 20 40 40 H 1.08994 * 109.47039 * 179.97438 * 22 21 20 41 41 H 1.09005 * 109.46744 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.46967 * 299.99739 * 23 22 21 43 43 H 1.09002 * 109.47299 * 60.00000 * 24 23 22 44 44 H 1.08996 * 109.46892 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 1.4721 -2.0816 1.7412 7 7 1.9552 -2.9915 0.6996 8 6 1.3857 -4.2034 0.5462 9 8 0.4712 -4.5417 1.2727 10 7 1.8298 -5.0403 -0.4123 11 6 1.2111 -6.3577 -0.5787 12 6 1.8864 -7.0907 -1.7090 13 1 2.6958 -6.6223 -2.2491 14 6 1.4717 -8.3599 -2.0529 15 7 0.4870 -8.9310 -1.3941 16 14 2.3083 -9.2682 -3.4545 17 1 3.7514 -9.4338 -3.1454 18 1 1.6820 -10.6042 -3.6221 19 1 2.1570 -8.4890 -4.7094 20 6 1.7115 0.2021 2.7259 21 6 2.0280 -0.4181 4.0882 22 6 3.5381 -0.6302 4.2135 23 6 4.0153 -1.5680 3.1029 24 6 3.6988 -0.9477 1.7406 25 1 -0.3633 0.5533 0.8659 26 1 -0.3633 0.4731 -0.9122 27 1 -0.3633 -1.0267 0.0462 28 1 1.6758 -2.5113 2.7220 29 1 0.3984 -1.9338 1.6251 30 1 2.6849 -2.7218 0.1203 31 1 2.5596 -4.7705 -0.9916 32 1 1.3217 -6.9300 0.3424 33 1 0.1520 -6.2357 -0.8056 34 1 0.1949 -9.8237 -1.6362 35 1 0.6357 0.3535 2.6363 36 1 2.2221 1.1609 2.6361 37 1 1.5178 -1.3771 4.1782 38 1 1.6885 0.2502 4.8794 39 1 4.0483 0.3288 4.1235 40 1 3.7637 -1.0716 5.1843 41 1 5.0911 -1.7194 3.1925 42 1 3.5051 -2.5270 3.1929 43 1 4.2090 0.0113 1.6505 44 1 4.0383 -1.6161 0.9494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854025249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:23 Heat of formation + Delta-G solvation = -114.702415 kcal Electronic energy + Delta-G solvation = -26217.522675 eV Core-core repulsion = 22489.814031 eV Total energy + Delta-G solvation = -3727.708644 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.15211 -38.67246 -37.26682 -36.24931 -34.54397 -33.94136 -32.33838 -31.70194 -31.08376 -29.60569 -27.48820 -25.72365 -23.19780 -23.06790 -22.36117 -20.16888 -19.67319 -18.82386 -17.97335 -17.53043 -16.49216 -16.14987 -16.00536 -15.79743 -15.24468 -14.86812 -14.69510 -14.44703 -14.27718 -14.00238 -13.62844 -13.52122 -13.18868 -13.07324 -12.99151 -12.75116 -12.55980 -12.27239 -12.18607 -11.95149 -11.90119 -11.59656 -11.56180 -11.50159 -11.21046 -10.94037 -10.84136 -10.67801 -10.57904 -10.26745 -10.08526 -9.44163 -9.34472 -8.82080 -8.65706 -7.73093 -6.11814 -4.17870 -0.27471 2.41488 3.14308 3.29425 3.33767 3.35674 3.43985 3.61975 3.91485 3.99948 4.10603 4.34776 4.37526 4.56715 4.63023 4.69523 4.81446 4.86817 4.90830 5.07717 5.10635 5.15790 5.24340 5.32755 5.39377 5.43655 5.46866 5.57386 5.67837 5.77794 5.77883 5.85419 5.88679 6.14459 6.74408 7.13320 7.54508 7.58154 7.60103 7.92605 8.07198 8.80194 8.96172 9.34444 9.50979 10.98428 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018860 B = 0.003392 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.274985 B = 8253.049938 C = 8800.557426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.418 3.582 3 O -0.940 6.940 4 O -0.927 6.927 5 C -0.546 4.546 6 C 0.154 3.846 7 N -0.765 5.765 8 C 0.696 3.304 9 O -0.604 6.604 10 N -0.726 5.726 11 C 0.267 3.733 12 C -0.541 4.541 13 H 0.063 0.937 14 C 0.064 3.936 15 N -0.887 5.887 16 Si 0.904 3.096 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.100 4.100 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.114 4.114 24 C -0.098 4.098 25 H 0.129 0.871 26 H 0.130 0.870 27 H 0.137 0.863 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.402 0.598 31 H 0.389 0.611 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.266 0.734 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.150 21.805 9.507 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.601 3.399 3 O -0.937 6.937 4 O -0.924 6.924 5 C -0.636 4.636 6 C 0.028 3.972 7 N -0.428 5.428 8 C 0.396 3.604 9 O -0.483 6.483 10 N -0.377 5.377 11 C 0.146 3.854 12 C -0.580 4.580 13 H 0.081 0.919 14 C -0.140 4.140 15 N -0.525 5.525 16 Si 0.731 3.269 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.138 4.138 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.153 4.153 24 C -0.137 4.137 25 H 0.148 0.852 26 H 0.149 0.851 27 H 0.155 0.845 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.239 0.761 31 H 0.222 0.778 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.746 21.561 9.475 23.847 hybrid contribution 0.447 -0.600 -0.725 1.042 sum 4.193 20.961 8.750 23.098 Atomic orbital electron populations 1.30290 1.26284 1.12458 1.11677 1.08155 0.78820 0.75619 0.77297 1.93569 1.79380 1.34424 1.86363 1.93581 1.79100 1.66462 1.53266 1.30128 1.05902 1.06900 1.20638 1.21012 0.97147 0.84845 0.94178 1.45462 1.41700 1.16966 1.38663 1.16059 0.82370 0.79914 0.82069 1.90868 1.32348 1.76489 1.48611 1.45719 1.39004 1.18549 1.34455 1.18983 0.93549 0.76113 0.96757 1.21213 1.19007 1.00801 1.16960 0.91905 1.24934 0.95010 0.97152 0.96879 1.69967 1.26869 1.15292 1.40329 0.86471 0.79529 0.78751 0.82118 1.20104 1.21135 1.20062 1.21440 1.01427 0.97338 0.93603 1.21526 0.96804 1.01665 0.95501 1.21550 0.95683 0.99868 0.98692 1.21492 1.01426 0.99491 0.92855 1.21394 0.89113 1.02706 1.00492 0.85203 0.85102 0.84469 0.89184 0.90422 0.76074 0.77824 0.95722 0.95724 0.92465 0.90447 0.89244 0.90794 0.91189 0.91802 0.91605 0.91178 0.90658 0.90133 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -5.05 9.65 101.05 0.98 -4.07 16 2 S 2.42 24.17 4.40 -107.50 -0.47 23.70 16 3 O -0.94 -11.39 17.71 -57.83 -1.02 -12.42 16 4 O -0.93 -12.46 15.78 -57.83 -0.91 -13.37 16 5 C -0.55 -4.69 0.38 -90.62 -0.03 -4.72 16 6 C 0.15 1.73 3.63 -4.04 -0.01 1.71 16 7 N -0.77 -11.23 4.69 -65.22 -0.31 -11.54 16 8 C 0.70 14.19 8.57 -86.92 -0.74 13.44 16 9 O -0.60 -14.50 16.34 5.29 0.09 -14.42 16 10 N -0.73 -15.88 5.55 -66.42 -0.37 -16.25 16 11 C 0.27 7.21 5.43 -5.20 -0.03 7.18 16 12 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 13 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 14 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 16 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 C -0.10 -0.64 4.50 -26.73 -0.12 -0.76 16 21 C -0.12 -0.75 5.65 -26.73 -0.15 -0.90 16 22 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 23 C -0.11 -0.91 5.65 -26.73 -0.15 -1.06 16 24 C -0.10 -0.83 4.53 -26.73 -0.12 -0.95 16 25 H 0.13 0.62 6.92 -51.93 -0.36 0.26 16 26 H 0.13 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.14 1.15 6.90 -51.92 -0.36 0.80 16 28 H 0.09 1.03 4.81 -51.93 -0.25 0.78 16 29 H 0.08 0.82 6.35 -51.93 -0.33 0.49 16 30 H 0.40 5.38 5.28 -40.82 -0.22 5.17 16 31 H 0.39 7.55 8.34 -40.82 -0.34 7.21 16 32 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 35 H 0.08 0.34 6.75 -51.93 -0.35 -0.01 16 36 H 0.09 0.53 7.94 -51.93 -0.41 0.12 16 37 H 0.07 0.53 6.40 -51.93 -0.33 0.20 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.72 6.47 -51.93 -0.34 0.38 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.72 6.67 -51.93 -0.35 0.38 16 LS Contribution 351.10 15.07 5.29 5.29 Total: -1.00 -36.36 351.10 -9.50 -45.86 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.55 Total: 7.27 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -0.97 Total: -4.67 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.06 Total: -53.37 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -1.85 Total: -40.20 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 24.17 SS G_CDS: -0.47 Total: 23.70 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.36 -9.50 -45.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854025249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.841 kcal (2) G-P(sol) polarization free energy of solvation -36.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds