Wall clock time and date at job start Fri Apr 10 2020 18:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42094 * 108.57856 * 2 1 4 4 O 1.42106 * 108.57724 * 228.97306 * 2 1 3 5 5 C 1.81397 * 101.92008 * 114.49013 * 2 1 3 6 6 C 1.52996 * 109.47581 * 54.37985 * 5 2 1 7 7 N 1.46506 * 109.47029 * 61.49688 * 6 5 2 8 8 C 1.34777 * 119.99923 * 185.41299 * 7 6 5 9 9 O 1.21587 * 120.00070 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99994 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00120 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47244 * 180.02562 * 11 10 8 13 13 H 1.07996 * 120.00247 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00217 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00023 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00338 * 179.97438 * 14 12 11 17 17 H 1.48509 * 109.46695 * 60.00201 * 16 14 12 18 18 H 1.48494 * 109.47077 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.46989 * 300.00491 * 16 14 12 20 20 C 1.52999 * 109.47267 * 294.37759 * 5 2 1 21 21 C 1.52997 * 109.47614 * 180.02562 * 20 5 2 22 22 C 1.53006 * 109.47069 * 59.99851 * 21 20 5 23 23 C 1.52999 * 109.47024 * 300.00509 * 22 21 20 24 24 C 1.52996 * 109.47256 * 59.99942 * 23 22 21 25 25 H 1.08991 * 109.47033 * 302.58069 * 1 2 3 26 26 H 1.08995 * 109.46842 * 62.58618 * 1 2 3 27 27 H 1.09002 * 109.46737 * 182.57853 * 1 2 3 28 28 H 1.08997 * 109.47265 * 181.49664 * 6 5 2 29 29 H 1.09001 * 109.46951 * 301.50159 * 6 5 2 30 30 H 0.96995 * 120.00149 * 5.40834 * 7 6 5 31 31 H 0.97001 * 119.99985 * 0.02562 * 10 8 7 32 32 H 1.09000 * 109.47213 * 300.00170 * 11 10 8 33 33 H 1.09004 * 109.47106 * 59.99892 * 11 10 8 34 34 H 0.96996 * 120.00673 * 179.97438 * 15 14 12 35 35 H 1.09005 * 109.46744 * 59.99756 * 20 5 2 36 36 H 1.09002 * 109.46967 * 300.00301 * 20 5 2 37 37 H 1.09002 * 109.47024 * 300.00050 * 21 20 5 38 38 H 1.08996 * 109.47249 * 179.97438 * 21 20 5 39 39 H 1.08998 * 109.46568 * 60.00106 * 22 21 20 40 40 H 1.08994 * 109.47039 * 179.97438 * 22 21 20 41 41 H 1.09005 * 109.46744 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.46967 * 299.99739 * 23 22 21 43 43 H 1.09002 * 109.47299 * 60.00000 * 24 23 22 44 44 H 1.08996 * 109.46892 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 1.4721 -2.0816 1.7412 7 7 1.9552 -2.9915 0.6996 8 6 1.3857 -4.2034 0.5462 9 8 0.4712 -4.5417 1.2727 10 7 1.8298 -5.0403 -0.4123 11 6 1.2111 -6.3577 -0.5787 12 6 1.8864 -7.0907 -1.7090 13 1 2.6958 -6.6223 -2.2491 14 6 1.4717 -8.3599 -2.0529 15 7 0.4870 -8.9310 -1.3941 16 14 2.3083 -9.2682 -3.4545 17 1 3.7514 -9.4338 -3.1454 18 1 1.6820 -10.6042 -3.6221 19 1 2.1570 -8.4890 -4.7094 20 6 1.7115 0.2021 2.7259 21 6 2.0280 -0.4181 4.0882 22 6 3.5381 -0.6302 4.2135 23 6 4.0153 -1.5680 3.1029 24 6 3.6988 -0.9477 1.7406 25 1 -0.3633 0.5533 0.8659 26 1 -0.3633 0.4731 -0.9122 27 1 -0.3633 -1.0267 0.0462 28 1 1.6758 -2.5113 2.7220 29 1 0.3984 -1.9338 1.6251 30 1 2.6849 -2.7218 0.1203 31 1 2.5596 -4.7705 -0.9916 32 1 1.3217 -6.9300 0.3424 33 1 0.1520 -6.2357 -0.8056 34 1 0.1949 -9.8237 -1.6362 35 1 0.6357 0.3535 2.6363 36 1 2.2221 1.1609 2.6361 37 1 1.5178 -1.3771 4.1782 38 1 1.6885 0.2502 4.8794 39 1 4.0483 0.3288 4.1235 40 1 3.7637 -1.0716 5.1843 41 1 5.0911 -1.7194 3.1925 42 1 3.5051 -2.5270 3.1929 43 1 4.2090 0.0113 1.6505 44 1 4.0383 -1.6161 0.9494 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854025249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:22 Heat of formation + Delta-G solvation = -143.434641 kcal Electronic energy + Delta-G solvation = -26218.768598 eV Core-core repulsion = 22489.814031 eV Total energy + Delta-G solvation = -3728.954567 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.27472 -39.91096 -38.17750 -37.13332 -36.20058 -35.45036 -34.30623 -32.52580 -31.83354 -30.23675 -29.33442 -26.96774 -24.53315 -23.80500 -23.57553 -21.80869 -20.40564 -19.98291 -19.33767 -18.32739 -17.98861 -17.39105 -17.13719 -16.90158 -16.53821 -16.39637 -15.88667 -15.47727 -15.26061 -15.01180 -14.72728 -14.46014 -14.35977 -14.03048 -13.99323 -13.78746 -13.66961 -13.46680 -13.23159 -13.09430 -13.07272 -12.89984 -12.68201 -12.48156 -12.23999 -12.21737 -12.10920 -11.95093 -11.47953 -11.30796 -11.24119 -11.14001 -10.79475 -10.77476 -10.23182 -9.57329 -8.26794 -6.42577 -1.04717 1.44014 1.48267 1.56085 1.67197 1.83882 2.24725 2.40370 2.59287 2.83002 3.07982 3.24714 3.39041 3.55222 3.69377 4.00300 4.04053 4.09859 4.18403 4.26727 4.31778 4.44144 4.54361 4.56905 4.63220 4.83080 4.88428 4.99051 5.01074 5.09564 5.19472 5.22940 5.30388 5.32266 5.33236 5.44346 5.51215 5.57691 5.68197 5.87412 6.22394 6.68487 7.24991 7.28606 7.71474 8.85171 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018860 B = 0.003392 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.274985 B = 8253.049938 C = 8800.557426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.415 3.585 3 O -0.963 6.963 4 O -0.970 6.970 5 C -0.527 4.527 6 C 0.145 3.855 7 N -0.744 5.744 8 C 0.696 3.304 9 O -0.641 6.641 10 N -0.726 5.726 11 C 0.286 3.714 12 C -0.558 4.558 13 H 0.080 0.920 14 C 0.007 3.993 15 N -0.929 5.929 16 Si 0.983 3.017 17 H -0.263 1.263 18 H -0.283 1.283 19 H -0.264 1.264 20 C -0.104 4.104 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.114 4.114 24 C -0.107 4.107 25 H 0.165 0.835 26 H 0.142 0.858 27 H 0.131 0.869 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.410 0.590 31 H 0.402 0.598 32 H -0.011 1.011 33 H -0.011 1.011 34 H 0.269 0.731 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.094 0.906 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.820 23.477 9.486 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.603 3.397 3 O -0.960 6.960 4 O -0.967 6.967 5 C -0.618 4.618 6 C 0.020 3.980 7 N -0.406 5.406 8 C 0.396 3.604 9 O -0.524 6.524 10 N -0.379 5.379 11 C 0.163 3.837 12 C -0.595 4.595 13 H 0.098 0.902 14 C -0.193 4.193 15 N -0.567 5.567 16 Si 0.807 3.193 17 H -0.188 1.188 18 H -0.209 1.209 19 H -0.189 1.189 20 C -0.143 4.143 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.152 4.152 24 C -0.145 4.145 25 H 0.183 0.817 26 H 0.160 0.840 27 H 0.150 0.850 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.249 0.751 31 H 0.237 0.763 32 H 0.007 0.993 33 H 0.007 0.993 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.113 0.887 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.482 23.316 9.442 25.551 hybrid contribution 0.203 -1.041 -0.615 1.226 sum 4.684 22.275 8.828 24.414 Atomic orbital electron populations 1.30236 1.23158 1.12908 1.14114 1.07983 0.79909 0.74665 0.77154 1.93539 1.80543 1.35154 1.86750 1.93527 1.80661 1.67195 1.55326 1.29989 1.05814 1.05454 1.20572 1.21324 0.98206 0.85417 0.93020 1.45307 1.40946 1.15284 1.39044 1.16166 0.82011 0.81043 0.81189 1.90836 1.34118 1.77633 1.49820 1.45375 1.39465 1.17452 1.35584 1.18416 0.92016 0.78081 0.95202 1.21580 1.19488 1.01352 1.17126 0.90236 1.26004 0.95478 0.98082 0.99709 1.70121 1.28523 1.15845 1.42253 0.85231 0.78630 0.77104 0.78377 1.18792 1.20864 1.18896 1.21630 1.03276 0.96959 0.92386 1.21552 0.96399 1.01589 0.96027 1.21566 0.96124 0.99949 0.98117 1.21485 1.01633 0.98925 0.93197 1.21506 0.89178 1.03343 1.00498 0.81722 0.83971 0.85023 0.88974 0.89282 0.75069 0.76286 0.99306 0.99343 0.92219 0.87885 0.88043 0.91849 0.89329 0.90712 0.91329 0.90680 0.92584 0.88734 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -8.43 9.65 113.37 1.09 -7.34 16 2 S 2.42 45.11 4.40 -56.49 -0.25 44.86 16 3 O -0.96 -21.85 17.71 -127.37 -2.26 -24.11 16 4 O -0.97 -25.88 15.78 -127.37 -2.01 -27.89 16 5 C -0.53 -8.18 0.38 -10.79 0.00 -8.19 16 6 C 0.14 3.12 3.63 86.38 0.31 3.43 16 7 N -0.74 -21.84 4.69 -478.53 -2.24 -24.09 16 8 C 0.70 29.01 8.57 179.06 1.53 30.54 16 9 O -0.64 -31.75 16.34 -3.99 -0.07 -31.82 16 10 N -0.73 -32.61 5.55 -482.31 -2.68 -35.29 16 11 C 0.29 16.10 5.43 85.63 0.46 16.57 16 12 C -0.56 -31.15 9.28 25.60 0.24 -30.91 16 13 H 0.08 4.08 7.60 -2.91 -0.02 4.05 16 14 C 0.01 0.40 5.46 84.65 0.46 0.86 16 15 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16 16 Si 0.98 43.09 29.54 68.60 2.03 45.12 16 17 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 19 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 20 C -0.10 -1.02 4.50 30.59 0.14 -0.88 16 21 C -0.12 -1.20 5.65 30.60 0.17 -1.03 16 22 C -0.12 -1.36 5.92 30.60 0.18 -1.17 16 23 C -0.11 -1.70 5.65 30.59 0.17 -1.53 16 24 C -0.11 -1.68 4.53 30.59 0.14 -1.54 16 25 H 0.16 0.93 6.92 -2.39 -0.02 0.91 16 26 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.13 1.97 6.90 -2.39 -0.02 1.96 16 28 H 0.09 2.04 4.81 -2.39 -0.01 2.03 16 29 H 0.09 1.76 6.35 -2.39 -0.02 1.74 16 30 H 0.41 10.98 5.28 -92.71 -0.49 10.49 16 31 H 0.40 15.75 8.34 -92.71 -0.77 14.97 16 32 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 33 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 34 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.10 0.49 6.75 -2.38 -0.02 0.48 16 36 H 0.10 0.85 7.94 -2.39 -0.02 0.83 16 37 H 0.06 0.80 6.40 -2.39 -0.02 0.78 16 38 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.06 1.05 6.47 -2.39 -0.02 1.03 16 43 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 1.25 6.67 -2.39 -0.02 1.24 16 Total: -1.00 -80.73 351.10 -2.52 -83.24 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -0.23 Total: 27.25 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 4.90 Total: -1.20 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -4.64 Total: -115.45 kcal Atomic # 8 Polarization: -79.49 SS G_CDS: -4.33 Total: -83.82 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 45.11 SS G_CDS: -0.25 Total: 44.86 kcal Total: -80.73 -2.52 -83.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854025249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.191 kcal (2) G-P(sol) polarization free energy of solvation -80.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds