Wall clock time and date at job start Fri Apr 10 2020 18:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42892 * 114.00079 * 2 1 4 4 C 1.52998 * 109.47478 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46988 * 64.99352 * 4 3 2 6 6 C 1.46494 * 120.00443 * 275.00416 * 5 4 3 7 7 C 1.50692 * 109.47456 * 280.00996 * 6 5 4 8 8 H 1.08008 * 120.00020 * 4.19368 * 7 6 5 9 9 C 1.37878 * 120.00242 * 184.18794 * 7 6 5 10 10 N 1.31518 * 119.99969 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 119.99800 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47419 * 89.99681 * 11 9 7 13 13 H 1.48506 * 109.47029 * 209.99373 * 11 9 7 14 14 H 1.48493 * 109.47255 * 329.99555 * 11 9 7 15 15 S 1.65603 * 119.99597 * 95.00372 * 5 4 3 16 16 O 1.42100 * 106.40373 * 330.33831 * 15 5 4 17 17 O 1.42103 * 106.40292 * 197.41673 * 15 5 4 18 18 N 1.65599 * 107.21832 * 83.87506 * 15 5 4 19 19 C 1.46503 * 119.99979 * 65.29544 * 18 15 5 20 20 C 1.52999 * 109.47232 * 165.49711 * 19 18 15 21 21 H 1.09000 * 110.34117 * 304.16614 * 20 19 18 22 22 C 1.51106 * 110.38395 * 66.45447 * 20 19 18 23 23 C 1.30526 * 111.09803 * 135.25262 * 22 20 19 24 24 C 1.51099 * 111.10784 * 359.97438 * 23 22 20 25 25 C 1.54625 * 104.72658 * 343.56708 * 24 23 22 26 26 H 1.08994 * 109.47161 * 59.99974 * 1 2 3 27 27 H 1.08998 * 109.47641 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47201 * 299.99970 * 1 2 3 29 29 H 1.08998 * 109.47689 * 59.99776 * 3 2 1 30 30 H 1.08998 * 109.47072 * 299.99737 * 3 2 1 31 31 H 1.09003 * 109.46853 * 305.00145 * 4 3 2 32 32 H 1.08997 * 109.47936 * 184.99661 * 4 3 2 33 33 H 1.09009 * 109.47064 * 40.01390 * 6 5 4 34 34 H 1.09001 * 109.47386 * 160.00586 * 6 5 4 35 35 H 0.97000 * 119.99798 * 179.97438 * 10 9 7 36 36 H 0.97003 * 120.00065 * 245.29508 * 18 15 5 37 37 H 1.09000 * 109.46865 * 45.49543 * 19 18 15 38 38 H 1.08999 * 109.46765 * 285.50031 * 19 18 15 39 39 H 1.07990 * 124.44703 * 314.97833 * 22 20 19 40 40 H 1.08002 * 124.44072 * 179.97438 * 23 22 20 41 41 H 1.09004 * 110.38609 * 224.75577 * 24 23 22 42 42 H 1.08996 * 110.47978 * 102.43095 * 24 23 22 43 43 H 1.09005 * 111.03873 * 266.60400 * 25 24 23 44 44 H 1.09004 * 111.07468 * 142.68170 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.0015 -0.8956 -1.3757 7 6 5.2430 -1.4354 -0.7140 8 1 5.9091 -0.7669 -0.1885 9 6 5.5288 -2.7827 -0.7791 10 7 6.6127 -3.2537 -0.2020 11 14 4.3772 -3.9387 -1.6884 12 1 4.7936 -4.0348 -3.1106 13 1 4.4331 -5.2851 -1.0642 14 1 2.9896 -3.4154 -1.6132 15 16 4.4474 1.5119 -2.5244 16 8 3.7091 2.7215 -2.4187 17 8 4.4164 0.6806 -3.6765 18 7 6.0357 1.9106 -2.2780 19 6 7.0643 0.8675 -2.2977 20 6 8.4457 1.5156 -2.4091 21 1 8.4921 2.1605 -3.2866 22 6 8.7594 2.3043 -1.1589 23 6 9.9786 2.0756 -0.7527 24 6 10.6810 1.0959 -1.6637 25 6 9.5455 0.4304 -2.4754 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.8507 0.5685 0.8427 32 1 3.9785 2.1765 0.0901 33 1 3.1197 -1.3167 -0.8924 34 1 4.0034 -1.1701 -2.4306 35 1 6.8135 -4.2015 -0.2475 36 1 6.2850 2.8347 -2.1206 37 1 6.9005 0.2119 -3.1529 38 1 7.0090 0.2855 -1.3778 39 1 8.0675 2.9729 -0.6688 40 1 10.4265 2.5274 0.1201 41 1 11.2166 0.3492 -1.0775 42 1 11.3675 1.6189 -2.3294 43 1 9.2138 -0.4927 -2.0000 44 1 9.8542 0.2488 -3.5049 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882561499.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:34 Heat of formation + Delta-G solvation = -127.775116 kcal Electronic energy + Delta-G solvation = -26527.273107 eV Core-core repulsion = 22798.997588 eV Total energy + Delta-G solvation = -3728.275519 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.81795 -39.08210 -38.30124 -37.01565 -36.88583 -35.73277 -34.48060 -31.32020 -30.35544 -29.48210 -28.80294 -26.99449 -24.88011 -24.24022 -23.19832 -21.58501 -20.27005 -19.50400 -19.09991 -18.59718 -18.43375 -17.50476 -17.08781 -16.99458 -16.85275 -16.37022 -16.07526 -15.71668 -15.42658 -15.16032 -14.66801 -14.41132 -14.00855 -13.74314 -13.58436 -13.41541 -13.33592 -13.18495 -13.04384 -12.98868 -12.73777 -12.69691 -12.67676 -12.47273 -12.16584 -12.06703 -12.04986 -11.95258 -11.86695 -11.63142 -11.55379 -10.68612 -10.52251 -10.34078 -9.73358 -9.70217 -8.20586 -6.20499 -0.29725 1.37679 1.41545 1.45476 1.50785 1.98166 2.40478 2.60005 2.97501 3.15780 3.42970 3.73640 3.76923 3.94450 4.07173 4.20517 4.31389 4.39293 4.41030 4.50300 4.56350 4.59974 4.64120 4.67344 4.71124 4.79869 4.86766 4.92391 5.01535 5.03614 5.06049 5.22273 5.24507 5.32912 5.46439 5.47390 5.56280 5.68064 5.82104 6.08333 6.23179 6.38263 6.40843 6.82327 7.42071 8.93367 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010968 B = 0.006062 C = 0.004567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.210545 B = 4617.841765 C = 6129.845334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.042 3.958 4 C 0.128 3.872 5 N -0.984 5.984 6 C 0.225 3.775 7 C -0.520 4.520 8 H 0.064 0.936 9 C 0.030 3.970 10 N -0.931 5.931 11 Si 0.910 3.090 12 H -0.275 1.275 13 H -0.282 1.282 14 H -0.252 1.252 15 S 2.797 3.203 16 O -1.001 7.001 17 O -1.016 7.016 18 N -1.112 6.112 19 C 0.132 3.868 20 C -0.068 4.068 21 H 0.097 0.903 22 C -0.170 4.170 23 C -0.168 4.168 24 C -0.097 4.097 25 C -0.126 4.126 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.048 0.952 34 H 0.026 0.974 35 H 0.264 0.736 36 H 0.422 0.578 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.054 0.946 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.140 12.301 -0.015 12.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.328 6.328 3 C -0.036 4.036 4 C 0.002 3.998 5 N -0.824 5.824 6 C 0.100 3.900 7 C -0.560 4.560 8 H 0.082 0.918 9 C -0.170 4.170 10 N -0.571 5.571 11 Si 0.735 3.265 12 H -0.201 1.201 13 H -0.208 1.208 14 H -0.176 1.176 15 S 2.805 3.195 16 O -0.985 6.985 17 O -1.000 7.000 18 N -0.874 5.874 19 C 0.006 3.994 20 C -0.088 4.088 21 H 0.115 0.885 22 C -0.188 4.188 23 C -0.186 4.186 24 C -0.134 4.134 25 C -0.165 4.165 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.127 0.873 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.257 0.743 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.150 0.850 40 H 0.156 0.844 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.073 0.927 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.553 12.030 -0.769 12.067 hybrid contribution -0.288 -0.610 0.089 0.680 sum -0.841 11.420 -0.680 11.471 Atomic orbital electron populations 1.22899 0.80371 1.03260 1.00730 1.88000 1.20810 1.28544 1.95494 1.23179 0.94242 0.84761 1.01459 1.21371 0.92612 0.98735 0.87098 1.57335 1.79492 1.16716 1.28835 1.19309 0.97500 0.76610 0.96544 1.21591 1.07261 0.93418 1.33695 0.91790 1.25420 0.96052 0.99560 0.95921 1.69991 1.26795 1.14466 1.45883 0.86271 0.81598 0.79246 0.79361 1.20067 1.20758 1.17610 1.01227 0.73159 0.71843 0.73244 1.93537 1.70686 1.46706 1.87606 1.93518 1.87215 1.69956 1.49314 1.55557 1.24654 1.17072 1.90150 1.21330 0.87189 0.88848 1.02059 1.21232 0.92790 0.96500 0.98232 0.88459 1.23313 0.97564 1.00615 0.97268 1.23485 0.96310 0.99231 0.99583 1.21361 0.97537 0.97257 0.97230 1.22533 0.95061 0.97510 1.01354 0.93936 0.89483 0.92287 0.89639 0.93463 0.89848 0.87318 0.93409 0.95592 0.92704 0.74272 0.92719 0.91528 0.84954 0.84360 0.91164 0.89011 0.92743 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -13.85 8.99 -148.98 -1.34 -15.18 16 3 C 0.04 1.23 6.28 71.98 0.45 1.68 16 4 C 0.13 4.13 5.75 86.38 0.50 4.63 16 5 N -0.98 -38.77 2.83 -519.85 -1.47 -40.24 16 6 C 0.23 10.64 4.39 85.63 0.38 11.01 16 7 C -0.52 -27.39 9.04 25.60 0.23 -27.16 16 8 H 0.06 3.55 6.70 -2.91 -0.02 3.53 16 9 C 0.03 1.65 5.47 84.65 0.46 2.11 16 10 N -0.93 -54.45 13.96 21.45 0.30 -54.15 16 11 Si 0.91 43.76 27.39 68.60 1.88 45.63 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 14 H -0.25 -11.67 6.66 99.48 0.66 -11.00 16 15 S 2.80 105.54 6.07 -56.49 -0.34 105.20 16 16 O -1.00 -37.16 17.17 -128.00 -2.20 -39.35 16 17 O -1.02 -46.18 16.02 -128.00 -2.05 -48.23 16 18 N -1.11 -34.70 5.96 -187.49 -1.12 -35.82 16 19 C 0.13 4.58 5.54 86.38 0.48 5.06 16 20 C -0.07 -1.86 3.05 -10.85 -0.03 -1.89 16 21 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 22 C -0.17 -4.18 9.62 26.26 0.25 -3.93 16 23 C -0.17 -3.86 10.77 26.26 0.28 -3.57 16 24 C -0.10 -2.19 6.81 30.53 0.21 -1.99 16 25 C -0.13 -3.46 6.71 31.71 0.21 -3.25 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 1.43 7.98 -2.39 -0.02 1.41 16 31 H 0.08 2.88 8.09 -2.39 -0.02 2.86 16 32 H 0.11 2.81 7.78 -2.39 -0.02 2.79 16 33 H 0.05 2.31 5.91 -2.38 -0.01 2.30 16 34 H 0.03 1.31 5.97 -2.39 -0.01 1.29 16 35 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 36 H 0.42 10.29 8.09 -96.74 -0.78 9.50 16 37 H 0.05 2.12 7.75 -2.39 -0.02 2.10 16 38 H 0.07 2.74 5.83 -2.39 -0.01 2.73 16 39 H 0.13 2.88 7.82 -2.92 -0.02 2.86 16 40 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 41 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.05 1.84 7.91 -2.38 -0.02 1.82 16 44 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -68.86 365.04 -1.50 -70.37 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.17 Total: 27.25 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 4.67 Total: -15.47 kcal Atomic # 7 Polarization: -127.92 SS G_CDS: -2.29 Total: -130.21 kcal Atomic # 8 Polarization: -97.18 SS G_CDS: -5.59 Total: -102.77 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.63 kcal Atomic # 16 Polarization: 105.54 SS G_CDS: -0.34 Total: 105.20 kcal Total: -68.86 -1.50 -70.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882561499.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.409 kcal (2) G-P(sol) polarization free energy of solvation -68.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds