Wall clock time and date at job start Fri Apr 10 2020 18:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42907 * 113.99635 * 2 1 4 4 C 1.53002 * 109.46775 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47055 * 64.99579 * 4 3 2 6 6 C 1.46847 * 111.00144 * 66.04768 * 5 4 3 7 7 C 1.53044 * 109.51335 * 185.83239 * 6 5 4 8 8 C 1.53117 * 109.27792 * 300.82256 * 7 6 5 9 9 H 1.08998 * 109.52156 * 297.68928 * 8 7 6 10 10 N 1.46494 * 109.52123 * 177.55958 * 8 7 6 11 11 C 1.34782 * 119.99804 * 85.00479 * 10 8 7 12 12 O 1.21283 * 119.99957 * 359.97438 * 11 10 8 13 13 C 1.50701 * 119.99993 * 180.02562 * 11 10 8 14 14 S 1.80998 * 109.47258 * 179.97438 * 13 11 10 15 15 C 1.76198 * 100.00091 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99784 * 0.02562 * 15 14 13 17 17 C 1.38802 * 120.00016 * 179.97438 * 15 14 13 18 18 N 1.31632 * 119.99966 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99899 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47233 * 90.00010 * 19 17 15 21 21 H 1.48500 * 109.46749 * 210.00131 * 19 17 15 22 22 H 1.48511 * 109.47017 * 329.99736 * 19 17 15 23 23 C 1.53127 * 109.15989 * 57.65607 * 8 7 6 24 24 H 1.08997 * 109.50037 * 62.28538 * 23 8 7 25 25 O 1.42898 * 109.50132 * 182.36426 * 23 8 7 26 26 C 1.46830 * 110.98168 * 190.26186 * 5 4 3 27 27 H 1.08996 * 109.46757 * 60.00217 * 1 2 3 28 28 H 1.08998 * 109.46424 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46807 * 300.00259 * 1 2 3 30 30 H 1.08989 * 109.47558 * 59.99746 * 3 2 1 31 31 H 1.09004 * 109.46326 * 299.99307 * 3 2 1 32 32 H 1.08999 * 109.47028 * 304.99424 * 4 3 2 33 33 H 1.08996 * 109.47036 * 184.99216 * 4 3 2 34 34 H 1.09002 * 109.46448 * 65.81961 * 6 5 4 35 35 H 1.08994 * 109.45958 * 305.84326 * 6 5 4 36 36 H 1.09001 * 109.49858 * 60.76701 * 7 6 5 37 37 H 1.09000 * 109.49965 * 180.88251 * 7 6 5 38 38 H 0.96997 * 120.00425 * 265.00014 * 10 8 7 39 39 H 1.09006 * 109.46658 * 299.99480 * 13 11 10 40 40 H 1.08995 * 109.47031 * 59.99221 * 13 11 10 41 41 H 0.96993 * 119.99607 * 180.02562 * 18 17 15 42 42 H 0.96693 * 113.99720 * 180.02562 * 25 23 8 43 43 H 1.08995 * 109.46742 * 54.13906 * 26 5 4 44 44 H 1.09004 * 109.45381 * 294.16241 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3056 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9769 0.5627 -1.2561 6 6 3.6951 1.4352 -2.4032 7 6 4.0329 0.6981 -3.7012 8 6 5.5121 0.3028 -3.6878 9 1 6.1287 1.2007 -3.6477 10 7 5.8276 -0.4540 -4.9018 11 6 6.1458 0.1971 -6.0382 12 8 6.1705 1.4096 -6.0558 13 6 6.4698 -0.5814 -7.2872 14 16 6.8522 0.5678 -8.6323 15 6 7.1837 -0.5782 -9.9290 16 1 7.1152 -1.6398 -9.7420 17 6 7.5317 -0.1168 -11.1909 18 7 7.6146 1.1770 -11.4189 19 14 7.8824 -1.3318 -12.5657 20 1 6.6238 -1.6314 -13.2946 21 1 8.8708 -0.7441 -13.5054 22 1 8.4316 -2.5858 -11.9900 23 6 5.7893 -0.5652 -2.4572 24 1 5.2015 -1.4811 -2.5181 25 8 7.1793 -0.8928 -2.4077 26 6 5.4005 0.2084 -1.1953 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8465 0.8898 31 1 1.6886 1.8463 -0.8901 32 1 3.8515 0.5684 0.8410 33 1 3.9785 2.1766 0.0888 34 1 4.3010 2.3383 -2.3302 35 1 2.6392 1.7053 -2.4032 36 1 3.4174 -0.1979 -3.7816 37 1 3.8385 1.3514 -4.5518 38 1 5.8076 -1.4237 -4.8878 39 1 7.3308 -1.2237 -7.1019 40 1 5.6127 -1.1942 -7.5660 41 1 7.8575 1.4994 -12.3008 42 1 7.4271 -1.4427 -1.6520 43 1 5.5832 -0.4122 -0.3181 44 1 5.9983 1.1174 -1.1279 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099686291.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:55 Heat of formation + Delta-G solvation = -125.943292 kcal Electronic energy + Delta-G solvation = -24612.228106 eV Core-core repulsion = 20884.032021 eV Total energy + Delta-G solvation = -3728.196085 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.20555 -38.76555 -37.94534 -36.43893 -34.63306 -32.39063 -32.11642 -30.40802 -29.57537 -28.10582 -26.44692 -25.44988 -24.11632 -23.49607 -21.64033 -20.34727 -20.09026 -17.83433 -17.52207 -17.00251 -16.80983 -16.28065 -16.18880 -15.66623 -15.13602 -14.99564 -14.77169 -14.74706 -14.42589 -14.20482 -13.85760 -13.32234 -13.10006 -13.01521 -12.83133 -12.56940 -12.42894 -12.34469 -12.00504 -11.84456 -11.60742 -11.29898 -11.09295 -11.03026 -10.98279 -10.76138 -10.59809 -10.28488 -9.96153 -9.76826 -9.29340 -9.03117 -8.79319 -8.64737 -8.18379 -6.44964 -6.17841 -3.87669 3.08121 3.18607 3.25174 3.30553 3.33693 3.35977 3.46834 3.75777 3.98899 4.24451 4.42061 4.61379 4.68376 4.73216 4.85363 4.92854 4.96890 5.02617 5.04134 5.06122 5.14117 5.15528 5.17246 5.33499 5.36265 5.41407 5.44903 5.48679 5.61571 5.66742 5.73288 5.96910 5.97600 6.17292 6.22022 6.62229 6.67486 6.73680 6.88763 7.41852 7.63595 7.82133 8.39343 8.71219 9.27472 10.89627 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025523 B = 0.002314 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.775755 B =12098.421621 C =12487.132950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.063 3.937 4 C 0.057 3.943 5 N -0.526 5.526 6 C 0.053 3.947 7 C -0.125 4.125 8 C 0.157 3.843 9 H 0.090 0.910 10 N -0.726 5.726 11 C 0.535 3.465 12 O -0.521 6.521 13 C -0.152 4.152 14 S -0.061 6.061 15 C -0.534 4.534 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.102 3.898 24 H 0.070 0.930 25 O -0.556 6.556 26 C 0.029 3.971 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.377 0.623 43 H 0.080 0.920 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.089 -3.474 26.747 29.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C -0.014 4.014 4 C -0.071 4.071 5 N -0.253 5.253 6 C -0.075 4.075 7 C -0.164 4.164 8 C 0.051 3.949 9 H 0.108 0.892 10 N -0.379 5.379 11 C 0.321 3.679 12 O -0.395 6.395 13 C -0.303 4.303 14 S 0.166 5.834 15 C -0.682 4.682 16 H 0.091 0.909 17 C -0.137 4.137 18 N -0.504 5.504 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C 0.042 3.958 24 H 0.088 0.912 25 O -0.360 6.360 26 C -0.100 4.100 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.224 0.776 43 H 0.099 0.901 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.123 -1.542 25.956 28.281 hybrid contribution 0.358 -1.969 -0.162 2.008 sum -10.765 -3.510 25.794 28.170 Atomic orbital electron populations 1.22735 0.81511 1.02730 0.99671 1.87994 1.19027 1.27056 1.95259 1.22595 0.93290 0.85396 1.00093 1.22116 0.93831 0.98373 0.92777 1.61849 1.16774 1.43987 1.02646 1.22188 1.01452 0.93930 0.89962 1.21972 0.95487 1.01709 0.97233 1.20857 0.95824 0.95427 0.82780 0.89227 1.45884 1.72381 1.09930 1.09701 1.20280 0.75380 0.88303 0.83934 1.90684 1.50566 1.13891 1.84374 1.23523 1.04461 1.04340 0.97972 1.85366 1.89608 1.08396 1.00064 1.22877 1.54242 0.94306 0.96803 0.90944 1.24996 0.94836 0.95760 0.98066 1.70022 1.45123 1.12465 1.22750 0.86167 0.78225 0.80404 0.80691 1.20297 1.20785 1.19697 1.22026 0.82534 0.97551 0.93665 0.91187 1.86656 1.24124 1.73861 1.51376 1.22753 0.88488 1.00060 0.98654 0.94150 0.89678 0.94472 0.93036 0.92980 0.89759 0.93082 0.94299 0.90058 0.90534 0.89740 0.76786 0.89225 0.89288 0.92238 0.77617 0.90122 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.37 -3.42 10.65 -35.23 -0.38 -3.79 16 3 C 0.06 0.45 6.00 37.16 0.22 0.67 16 4 C 0.06 0.41 5.34 -3.82 -0.02 0.39 16 5 N -0.53 -4.68 4.60 -234.68 -1.08 -5.76 16 6 C 0.05 0.51 5.30 -3.83 -0.02 0.49 16 7 C -0.12 -1.46 5.67 -26.65 -0.15 -1.62 16 8 C 0.16 2.04 2.20 -67.81 -0.15 1.89 16 9 H 0.09 1.42 7.58 -51.93 -0.39 1.02 16 10 N -0.73 -10.65 5.00 -53.69 -0.27 -10.92 16 11 C 0.53 10.48 7.81 -10.98 -0.09 10.39 16 12 O -0.52 -12.15 15.53 5.55 0.09 -12.07 16 13 C -0.15 -3.20 6.16 36.01 0.22 -2.98 16 14 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16 15 C -0.53 -15.50 9.50 30.94 0.29 -15.21 16 16 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.54 13.22 55.49 0.73 -25.81 16 19 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 C 0.10 1.02 3.13 -26.65 -0.08 0.93 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 O -0.56 -5.76 13.23 -35.23 -0.47 -6.22 16 26 C 0.03 0.25 5.09 -3.84 -0.02 0.23 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.05 0.28 8.14 -51.94 -0.42 -0.14 16 31 H 0.05 0.36 6.23 -51.93 -0.32 0.04 16 32 H 0.08 0.57 7.98 -51.93 -0.41 0.15 16 33 H 0.05 0.32 8.12 -51.93 -0.42 -0.10 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.72 6.13 -51.93 -0.32 0.40 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.40 4.85 8.60 -40.82 -0.35 4.50 16 39 H 0.09 1.77 8.14 -51.91 -0.42 1.35 16 40 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 41 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.38 2.10 9.08 45.56 0.41 2.52 16 43 H 0.08 0.54 8.01 -51.93 -0.42 0.13 16 44 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 373.80 15.07 5.63 5.63 Total: -1.00 -36.49 373.80 -8.17 -44.66 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.42 Total: 2.98 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 1.23 Total: -1.50 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.61 Total: -42.49 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.76 Total: -22.08 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.49 -8.17 -44.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099686291.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.287 kcal (2) G-P(sol) polarization free energy of solvation -36.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds