Wall clock time and date at job start Fri Apr 10 2020 18:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42104 * 108.57643 * 2 1 4 4 O 1.42094 * 108.57781 * 228.96946 * 2 1 3 5 5 C 1.81401 * 101.91945 * 114.48035 * 2 1 3 6 6 C 1.52996 * 109.47183 * 179.97438 * 5 2 1 7 7 C 1.52995 * 109.47248 * 180.02562 * 6 5 2 8 8 N 1.46897 * 109.47298 * 180.02562 * 7 6 5 9 9 C 1.46898 * 111.00122 * 170.00105 * 8 7 6 10 10 C 1.53246 * 109.33920 * 172.74589 * 9 8 7 11 11 N 1.47077 * 108.52284 * 53.82904 * 10 9 8 12 12 C 1.34774 * 120.88194 * 128.83612 * 11 10 9 13 13 O 1.21278 * 120.00251 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99924 * 179.97438 * 12 11 10 15 15 C 1.50699 * 109.47367 * 179.97438 * 14 12 11 16 16 H 1.07999 * 119.99531 * 0.02562 * 15 14 12 17 17 C 1.37872 * 120.00403 * 179.97438 * 15 14 12 18 18 N 1.31522 * 119.99954 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00177 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47351 * 60.00569 * 19 17 15 21 21 H 1.48510 * 109.47213 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47511 * 300.00255 * 19 17 15 23 23 C 1.47081 * 118.23534 * 308.81269 * 11 10 9 24 24 C 1.46897 * 110.99998 * 45.69378 * 8 7 6 25 25 H 1.09000 * 109.47725 * 305.51865 * 1 2 3 26 26 H 1.09004 * 109.47278 * 65.51682 * 1 2 3 27 27 H 1.08998 * 109.47280 * 185.51333 * 1 2 3 28 28 H 1.09001 * 109.46732 * 60.00143 * 5 2 1 29 29 H 1.09002 * 109.47224 * 300.00640 * 5 2 1 30 30 H 1.09001 * 109.47167 * 60.00413 * 6 5 2 31 31 H 1.08997 * 109.47091 * 300.00469 * 6 5 2 32 32 H 1.09004 * 109.47489 * 59.99720 * 7 6 5 33 33 H 1.08997 * 109.47132 * 300.00045 * 7 6 5 34 34 H 1.08997 * 109.49724 * 52.78734 * 9 8 7 35 35 H 1.09005 * 109.49070 * 292.70056 * 9 8 7 36 36 H 1.09006 * 109.62559 * 173.53557 * 10 9 8 37 37 H 1.08996 * 109.62828 * 293.92300 * 10 9 8 38 38 H 1.08997 * 109.47574 * 300.00211 * 14 12 11 39 39 H 1.09005 * 109.46878 * 60.00094 * 14 12 11 40 40 H 0.96995 * 120.00061 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.62944 * 170.89122 * 23 11 10 42 42 H 1.08999 * 109.63243 * 291.47520 * 23 11 10 43 43 H 1.08999 * 109.49205 * 67.29797 * 24 8 7 44 44 H 1.08997 * 109.51913 * 307.22880 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8842 -1.0160 5 6 2.1887 -0.7355 1.6153 6 6 3.7053 -0.8194 1.7981 7 6 4.0214 -1.4403 3.1602 8 7 5.4776 -1.5203 3.3359 9 6 5.8219 -1.8877 4.7159 10 6 7.3308 -2.1372 4.8132 11 7 8.0344 -0.9564 4.2900 12 6 9.0089 -0.3590 5.0040 13 8 9.3158 -0.7940 6.0937 14 6 9.7172 0.8497 4.4484 15 6 10.7535 1.3223 5.4351 16 1 10.8863 0.7995 6.3708 17 6 11.5329 2.4214 5.1430 18 7 11.3716 3.0578 4.0034 19 14 12.8170 3.0077 6.3664 20 1 13.8024 1.9232 6.6076 21 1 13.5151 4.1986 5.8188 22 1 12.1542 3.3677 7.6455 23 6 7.6466 -0.4451 2.9665 24 6 6.1253 -0.2621 2.9419 25 1 -0.3634 0.5970 0.8364 26 1 -0.3634 0.4259 -0.9353 27 1 -0.3634 -1.0229 0.0987 28 1 1.7609 -1.7368 1.6666 29 1 1.7609 -0.1169 2.4043 30 1 4.1335 0.1817 1.7467 31 1 4.1327 -1.4382 1.0091 32 1 3.5933 -2.4415 3.2113 33 1 3.5940 -0.8218 3.9494 34 1 5.2847 -2.7937 4.9961 35 1 5.5434 -1.0764 5.3886 36 1 7.6090 -2.2974 5.8549 37 1 7.5954 -3.0154 4.2243 38 1 10.2030 0.5862 3.5089 39 1 8.9937 1.6458 4.2726 40 1 11.9196 3.8313 3.7980 41 1 8.1335 0.5135 2.7872 42 1 7.9421 -1.1586 2.1973 43 1 5.8425 0.5265 3.6392 44 1 5.8081 0.0113 1.9356 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143197057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:13 Heat of formation + Delta-G solvation = -95.494821 kcal Electronic energy + Delta-G solvation = -24791.516269 eV Core-core repulsion = 21064.640528 eV Total energy + Delta-G solvation = -3726.875740 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.69753 -37.90705 -37.35923 -36.40987 -35.23386 -33.11710 -32.89598 -31.15742 -30.13397 -29.03867 -27.85596 -25.25807 -23.86639 -23.39378 -21.60050 -20.60231 -19.27284 -18.40610 -17.20276 -16.72259 -16.64363 -16.43295 -15.85950 -15.61431 -15.34356 -15.04111 -14.88244 -14.61980 -14.35658 -14.25529 -13.83116 -13.70999 -13.12954 -13.01103 -12.84493 -12.45945 -12.37648 -12.36348 -12.32593 -12.06767 -11.95801 -11.50320 -11.39597 -11.24151 -11.12057 -11.09999 -10.95595 -10.76292 -10.58791 -10.57297 -9.93325 -9.21601 -8.62815 -8.56281 -8.41469 -8.01488 -6.03947 -4.03518 -0.47347 2.30061 3.16265 3.38667 3.40729 3.44896 3.53364 3.54963 3.67146 3.81599 4.16547 4.27015 4.28928 4.49239 4.49922 4.56582 4.86933 4.95225 5.03943 5.09736 5.13213 5.24911 5.33249 5.34109 5.37996 5.45718 5.61865 5.65281 5.66161 5.81293 5.90230 6.05408 6.20887 6.29564 6.85532 6.91107 7.04036 7.22056 7.33295 7.97845 8.00692 8.39072 9.06478 9.21126 9.61361 11.08394 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019970 B = 0.002486 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.742102 B =11261.971836 C =12290.544291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.421 3.579 3 O -0.936 6.936 4 O -0.937 6.937 5 C -0.609 4.609 6 C -0.119 4.119 7 C 0.065 3.935 8 N -0.538 5.538 9 C 0.045 3.955 10 C 0.116 3.884 11 N -0.631 5.631 12 C 0.518 3.482 13 O -0.546 6.546 14 C 0.008 3.992 15 C -0.509 4.509 16 H 0.074 0.926 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.902 3.098 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.115 3.885 24 C 0.029 3.971 25 H 0.127 0.873 26 H 0.129 0.871 27 H 0.127 0.873 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.038 0.962 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.262 0.738 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.042 0.958 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.610 -9.099 -7.877 28.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.603 3.397 3 O -0.933 6.933 4 O -0.934 6.934 5 C -0.738 4.738 6 C -0.158 4.158 7 C -0.064 4.064 8 N -0.263 5.263 9 C -0.084 4.084 10 C -0.008 4.008 11 N -0.368 5.368 12 C 0.310 3.690 13 O -0.423 6.423 14 C -0.031 4.031 15 C -0.548 4.548 16 H 0.092 0.908 17 C -0.146 4.146 18 N -0.540 5.540 19 Si 0.730 3.270 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.009 4.009 24 C -0.099 4.099 25 H 0.146 0.854 26 H 0.148 0.852 27 H 0.146 0.854 28 H 0.152 0.848 29 H 0.150 0.850 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.119 0.881 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -24.603 -9.230 -8.336 27.568 hybrid contribution -0.505 0.704 1.645 1.859 sum -25.108 -8.525 -6.690 27.347 Atomic orbital electron populations 1.30298 1.27158 1.11471 1.11827 1.07869 0.78181 0.75921 0.77757 1.93629 1.78826 1.34395 1.86447 1.93615 1.78867 1.67019 1.53922 1.30314 1.06280 1.14023 1.23220 1.21535 0.90218 1.03687 1.00350 1.22044 0.88487 1.00745 0.95129 1.62035 1.07787 1.32805 1.23700 1.22492 0.97248 1.00558 0.88113 1.21477 0.89519 0.88785 1.00996 1.48450 1.38465 1.30569 1.19335 1.22069 0.77536 0.85101 0.84332 1.90517 1.64430 1.65694 1.21619 1.19234 0.95909 0.89631 0.98314 1.21137 1.17375 1.12291 1.03970 0.90814 1.25002 0.97551 0.96408 0.95614 1.69945 1.40668 1.20604 1.22805 0.86484 0.81375 0.77934 0.81209 1.20120 1.21349 1.20180 1.21756 0.93031 1.01156 0.84908 1.22729 0.95496 0.90230 1.01468 0.85380 0.85249 0.85398 0.84827 0.84990 0.89504 0.88916 0.90262 0.94503 0.90070 0.94339 0.89075 0.91681 0.93419 0.93570 0.92827 0.88135 0.91233 0.93962 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.45 10.62 101.05 1.07 -0.38 16 2 S 2.42 14.04 5.36 -107.50 -0.58 13.47 16 3 O -0.94 -9.62 18.10 -57.83 -1.05 -10.67 16 4 O -0.94 -9.25 18.10 -57.83 -1.05 -10.29 16 5 C -0.61 -2.45 5.81 37.16 0.22 -2.24 16 6 C -0.12 -0.90 4.47 -26.74 -0.12 -1.02 16 7 C 0.06 0.55 5.27 -3.83 -0.02 0.53 16 8 N -0.54 -6.17 4.78 -234.32 -1.12 -7.29 16 9 C 0.04 0.54 5.58 -3.70 -0.02 0.52 16 10 C 0.12 1.76 6.60 -3.60 -0.02 1.74 16 11 N -0.63 -11.54 3.01 -172.46 -0.52 -12.06 16 12 C 0.52 12.13 7.70 -10.99 -0.08 12.05 16 13 O -0.55 -14.50 14.91 5.56 0.08 -14.42 16 14 C 0.01 0.21 3.83 -29.03 -0.11 0.10 16 15 C -0.51 -14.96 8.92 -34.44 -0.31 -15.27 16 16 H 0.07 2.26 6.75 -52.49 -0.35 1.90 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 19 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.12 1.75 6.50 -3.60 -0.02 1.73 16 24 C 0.03 0.37 5.04 -3.70 -0.02 0.35 16 25 H 0.13 0.08 8.14 -51.92 -0.42 -0.35 16 26 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 27 H 0.13 0.04 8.14 -51.93 -0.42 -0.38 16 28 H 0.13 0.21 8.14 -51.92 -0.42 -0.21 16 29 H 0.13 0.28 8.14 -51.92 -0.42 -0.15 16 30 H 0.09 0.71 6.18 -51.93 -0.32 0.39 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 34 H 0.08 0.79 8.11 -51.93 -0.42 0.37 16 35 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 1.52 7.06 -51.93 -0.37 1.15 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 1.24 8.00 -51.93 -0.42 0.83 16 39 H 0.05 1.20 7.66 -51.93 -0.40 0.80 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.10 1.64 6.02 -51.93 -0.31 1.32 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 0.97 5.73 -51.93 -0.30 0.67 16 LS Contribution 365.65 15.07 5.51 5.51 Total: -1.00 -39.43 365.65 -9.63 -49.06 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -7.09 Total: -4.47 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 0.46 Total: -0.39 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -0.90 Total: -45.12 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -2.01 Total: -35.38 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 14.04 SS G_CDS: -0.58 Total: 13.47 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.43 -9.63 -49.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.435 kcal (2) G-P(sol) polarization free energy of solvation -39.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds