Wall clock time and date at job start Fri Apr 10 2020 18:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42104 * 108.57643 * 2 1 4 4 O 1.42094 * 108.57781 * 228.96946 * 2 1 3 5 5 C 1.81401 * 101.91945 * 114.48035 * 2 1 3 6 6 C 1.52996 * 109.47183 * 179.97438 * 5 2 1 7 7 C 1.52995 * 109.47248 * 180.02562 * 6 5 2 8 8 N 1.46897 * 109.47298 * 180.02562 * 7 6 5 9 9 C 1.46898 * 111.00122 * 170.00105 * 8 7 6 10 10 C 1.53246 * 109.33920 * 172.74589 * 9 8 7 11 11 N 1.47077 * 108.52284 * 53.82904 * 10 9 8 12 12 C 1.34774 * 120.88194 * 128.83612 * 11 10 9 13 13 O 1.21278 * 120.00251 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99924 * 179.97438 * 12 11 10 15 15 C 1.50699 * 109.47367 * 179.97438 * 14 12 11 16 16 H 1.07999 * 119.99531 * 0.02562 * 15 14 12 17 17 C 1.37872 * 120.00403 * 179.97438 * 15 14 12 18 18 N 1.31522 * 119.99954 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00177 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47351 * 60.00569 * 19 17 15 21 21 H 1.48510 * 109.47213 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47511 * 300.00255 * 19 17 15 23 23 C 1.47081 * 118.23534 * 308.81269 * 11 10 9 24 24 C 1.46897 * 110.99998 * 45.69378 * 8 7 6 25 25 H 1.09000 * 109.47725 * 305.51865 * 1 2 3 26 26 H 1.09004 * 109.47278 * 65.51682 * 1 2 3 27 27 H 1.08998 * 109.47280 * 185.51333 * 1 2 3 28 28 H 1.09001 * 109.46732 * 60.00143 * 5 2 1 29 29 H 1.09002 * 109.47224 * 300.00640 * 5 2 1 30 30 H 1.09001 * 109.47167 * 60.00413 * 6 5 2 31 31 H 1.08997 * 109.47091 * 300.00469 * 6 5 2 32 32 H 1.09004 * 109.47489 * 59.99720 * 7 6 5 33 33 H 1.08997 * 109.47132 * 300.00045 * 7 6 5 34 34 H 1.08997 * 109.49724 * 52.78734 * 9 8 7 35 35 H 1.09005 * 109.49070 * 292.70056 * 9 8 7 36 36 H 1.09006 * 109.62559 * 173.53557 * 10 9 8 37 37 H 1.08996 * 109.62828 * 293.92300 * 10 9 8 38 38 H 1.08997 * 109.47574 * 300.00211 * 14 12 11 39 39 H 1.09005 * 109.46878 * 60.00094 * 14 12 11 40 40 H 0.96995 * 120.00061 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.62944 * 170.89122 * 23 11 10 42 42 H 1.08999 * 109.63243 * 291.47520 * 23 11 10 43 43 H 1.08999 * 109.49205 * 67.29797 * 24 8 7 44 44 H 1.08997 * 109.51913 * 307.22880 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8842 -1.0160 5 6 2.1887 -0.7355 1.6153 6 6 3.7053 -0.8194 1.7981 7 6 4.0214 -1.4403 3.1602 8 7 5.4776 -1.5203 3.3359 9 6 5.8219 -1.8877 4.7159 10 6 7.3308 -2.1372 4.8132 11 7 8.0344 -0.9564 4.2900 12 6 9.0089 -0.3590 5.0040 13 8 9.3158 -0.7940 6.0937 14 6 9.7172 0.8497 4.4484 15 6 10.7535 1.3223 5.4351 16 1 10.8863 0.7995 6.3708 17 6 11.5329 2.4214 5.1430 18 7 11.3716 3.0578 4.0034 19 14 12.8170 3.0077 6.3664 20 1 13.8024 1.9232 6.6076 21 1 13.5151 4.1986 5.8188 22 1 12.1542 3.3677 7.6455 23 6 7.6466 -0.4451 2.9665 24 6 6.1253 -0.2621 2.9419 25 1 -0.3634 0.5970 0.8364 26 1 -0.3634 0.4259 -0.9353 27 1 -0.3634 -1.0229 0.0987 28 1 1.7609 -1.7368 1.6666 29 1 1.7609 -0.1169 2.4043 30 1 4.1335 0.1817 1.7467 31 1 4.1327 -1.4382 1.0091 32 1 3.5933 -2.4415 3.2113 33 1 3.5940 -0.8218 3.9494 34 1 5.2847 -2.7937 4.9961 35 1 5.5434 -1.0764 5.3886 36 1 7.6090 -2.2974 5.8549 37 1 7.5954 -3.0154 4.2243 38 1 10.2030 0.5862 3.5089 39 1 8.9937 1.6458 4.2726 40 1 11.9196 3.8313 3.7980 41 1 8.1335 0.5135 2.7872 42 1 7.9421 -1.1586 2.1973 43 1 5.8425 0.5265 3.6392 44 1 5.8081 0.0113 1.9356 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143197057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:12 Heat of formation + Delta-G solvation = -127.657356 kcal Electronic energy + Delta-G solvation = -24792.910941 eV Core-core repulsion = 21064.640528 eV Total energy + Delta-G solvation = -3728.270413 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.10565 -39.26371 -37.93732 -36.99455 -36.37402 -35.16717 -34.00653 -32.37498 -30.91782 -30.36206 -28.97717 -26.41377 -25.31366 -24.82040 -22.62441 -21.67690 -19.90377 -19.70856 -18.67522 -17.91046 -17.40799 -17.20745 -17.09769 -16.86069 -16.45483 -16.21085 -16.20526 -15.92333 -15.73793 -15.29757 -14.60979 -14.35154 -14.20478 -14.02863 -13.86465 -13.64137 -13.36560 -13.11170 -13.10623 -13.01728 -12.99211 -12.95285 -12.78140 -12.59970 -12.38657 -12.27638 -12.19337 -11.98554 -11.89983 -11.65518 -11.39866 -11.18873 -10.64229 -10.50449 -9.75121 -9.27195 -8.26518 -6.34579 -0.86370 1.38764 1.41939 1.50594 1.81303 1.96054 2.10062 2.42434 2.70115 2.94823 3.08303 3.18607 3.70926 3.80977 3.87011 3.91342 3.97253 4.14459 4.15787 4.23547 4.27600 4.32417 4.42131 4.49443 4.55931 4.63439 4.75465 4.79007 4.83664 4.86928 4.98570 5.01014 5.02560 5.08858 5.11586 5.21905 5.58565 5.74236 5.94773 5.98356 6.07804 6.50977 6.78259 7.30948 7.42214 8.85437 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019970 B = 0.002486 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.742102 B =11261.971836 C =12290.544291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.637 4.637 2 S 2.414 3.586 3 O -0.994 6.994 4 O -0.990 6.990 5 C -0.592 4.592 6 C -0.130 4.130 7 C 0.064 3.936 8 N -0.542 5.542 9 C 0.054 3.946 10 C 0.111 3.889 11 N -0.622 5.622 12 C 0.517 3.483 13 O -0.586 6.586 14 C 0.016 3.984 15 C -0.540 4.540 16 H 0.054 0.946 17 C 0.010 3.990 18 N -0.923 5.923 19 Si 0.966 3.034 20 H -0.272 1.272 21 H -0.273 1.273 22 H -0.272 1.272 23 C 0.109 3.891 24 C 0.036 3.964 25 H 0.152 0.848 26 H 0.131 0.869 27 H 0.156 0.844 28 H 0.169 0.831 29 H 0.159 0.841 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.044 0.956 34 H 0.116 0.884 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.268 0.732 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.030 0.970 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.237 -10.187 -7.558 30.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.790 4.790 2 S 2.602 3.398 3 O -0.992 6.992 4 O -0.987 6.987 5 C -0.724 4.724 6 C -0.169 4.169 7 C -0.064 4.064 8 N -0.267 5.267 9 C -0.075 4.075 10 C -0.012 4.012 11 N -0.356 5.356 12 C 0.308 3.692 13 O -0.466 6.466 14 C -0.023 4.023 15 C -0.579 4.579 16 H 0.072 0.928 17 C -0.189 4.189 18 N -0.563 5.563 19 Si 0.790 3.210 20 H -0.197 1.197 21 H -0.197 1.197 22 H -0.197 1.197 23 C -0.014 4.014 24 C -0.092 4.092 25 H 0.171 0.829 26 H 0.150 0.850 27 H 0.174 0.826 28 H 0.187 0.813 29 H 0.177 0.823 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.062 0.938 34 H 0.134 0.866 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.048 0.952 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -27.247 -10.322 -8.087 30.238 hybrid contribution 0.187 0.982 1.499 1.801 sum -27.060 -9.340 -6.588 29.375 Atomic orbital electron populations 1.30082 1.21724 1.13985 1.13162 1.07620 0.80029 0.74188 0.77921 1.93558 1.81136 1.37072 1.87405 1.93548 1.81062 1.67555 1.56524 1.30152 1.04043 1.16382 1.21791 1.21568 0.92820 1.02697 0.99802 1.22180 0.86186 1.02418 0.95570 1.62045 1.10027 1.31664 1.22954 1.22415 0.94861 1.01751 0.88454 1.21724 0.91552 0.87772 1.00128 1.48377 1.36805 1.30733 1.19729 1.21551 0.78645 0.84878 0.84142 1.90484 1.66160 1.66755 1.23200 1.19014 0.95336 0.90730 0.97267 1.21351 1.19176 1.13162 1.04171 0.92762 1.25812 0.99358 0.96197 0.97489 1.70025 1.41376 1.20840 1.24047 0.85492 0.78730 0.77833 0.78914 1.19707 1.19739 1.19724 1.21958 0.95199 1.00656 0.83589 1.22629 0.93362 0.90774 1.02458 0.82930 0.85019 0.82564 0.81343 0.82303 0.90965 0.89590 0.87827 0.93771 0.86602 0.95563 0.90772 0.90039 0.94315 0.94403 0.92307 0.89868 0.89620 0.95198 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -0.55 10.62 113.37 1.20 0.65 16 2 S 2.41 25.24 5.36 -56.49 -0.30 24.94 16 3 O -0.99 -20.91 18.10 -127.37 -2.31 -23.21 16 4 O -0.99 -19.52 18.10 -127.37 -2.30 -21.82 16 5 C -0.59 -2.76 5.81 71.98 0.42 -2.34 16 6 C -0.13 -1.68 4.47 30.59 0.14 -1.54 16 7 C 0.06 0.87 5.27 86.30 0.45 1.32 16 8 N -0.54 -11.16 4.78 -895.25 -4.28 -15.43 16 9 C 0.05 1.19 5.58 86.39 0.48 1.67 16 10 C 0.11 3.29 6.60 86.35 0.57 3.86 16 11 N -0.62 -23.06 3.01 -817.92 -2.46 -25.52 16 12 C 0.52 25.17 7.70 87.66 0.68 25.85 16 13 O -0.59 -32.34 14.91 -3.02 -0.05 -32.39 16 14 C 0.02 0.85 3.83 29.10 0.11 0.96 16 15 C -0.54 -32.86 8.92 25.60 0.23 -32.63 16 16 H 0.05 3.46 6.75 -2.91 -0.02 3.44 16 17 C 0.01 0.60 5.46 84.65 0.46 1.06 16 18 N -0.92 -55.08 13.29 21.45 0.28 -54.79 16 19 Si 0.97 46.21 29.54 68.60 2.03 48.23 16 20 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 23 C 0.11 3.34 6.50 86.35 0.56 3.90 16 24 C 0.04 0.89 5.04 86.39 0.44 1.33 16 25 H 0.15 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 27 H 0.16 -0.66 8.14 -2.39 -0.02 -0.68 16 28 H 0.17 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.16 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.07 1.13 6.18 -2.39 -0.01 1.11 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.04 0.57 8.08 -2.39 -0.02 0.55 16 34 H 0.12 1.82 8.11 -2.39 -0.02 1.80 16 35 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.07 2.48 7.06 -2.38 -0.02 2.46 16 37 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.04 2.12 8.00 -2.39 -0.02 2.10 16 39 H 0.04 2.07 7.66 -2.38 -0.02 2.05 16 40 H 0.27 14.99 8.31 -92.71 -0.77 14.21 16 41 H 0.08 2.84 6.02 -2.39 -0.01 2.82 16 42 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.11 2.29 5.73 -2.39 -0.01 2.28 16 Total: -1.00 -89.52 365.65 -2.66 -92.18 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: 0.98 Total: 3.74 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 5.74 Total: 4.09 kcal Atomic # 7 Polarization: -89.30 SS G_CDS: -6.45 Total: -95.75 kcal Atomic # 8 Polarization: -72.77 SS G_CDS: -4.66 Total: -77.43 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Atomic # 16 Polarization: 25.24 SS G_CDS: -0.30 Total: 24.94 kcal Total: -89.52 -2.66 -92.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.473 kcal (2) G-P(sol) polarization free energy of solvation -89.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds