Wall clock time and date at job start Fri Apr 10 2020 18:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42104 * 108.57579 * 2 1 4 4 O 1.42093 * 108.58313 * 228.97058 * 2 1 3 5 5 C 1.81401 * 101.91967 * 114.48307 * 2 1 3 6 6 C 1.52991 * 109.47272 * 174.49258 * 5 2 1 7 7 C 1.52996 * 115.55269 * 269.08815 * 6 5 2 8 8 C 1.50700 * 109.47312 * 294.84349 * 7 6 5 9 9 O 1.21284 * 119.99539 * 355.19151 * 8 7 6 10 10 N 1.34776 * 120.00107 * 175.19900 * 8 7 6 11 11 C 1.46499 * 119.99942 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47140 * 180.02562 * 11 10 8 13 13 C 1.52994 * 109.47127 * 180.02562 * 12 11 10 14 14 N 1.46492 * 109.47177 * 180.02562 * 13 12 11 15 15 C 1.36945 * 120.00007 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00380 * 359.97438 * 15 14 13 17 17 C 1.38818 * 119.99858 * 180.02562 * 15 14 13 18 18 N 1.31621 * 120.00114 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00088 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47015 * 59.99264 * 19 17 15 21 21 H 1.48494 * 109.47293 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47147 * 299.99941 * 19 17 15 23 23 C 1.53010 * 117.49997 * 123.37737 * 6 5 2 24 24 C 1.52997 * 59.99924 * 252.51523 * 23 6 5 25 25 H 1.09003 * 109.46799 * 65.51853 * 1 2 3 26 26 H 1.09001 * 109.46957 * 185.51294 * 1 2 3 27 27 H 1.08995 * 109.47236 * 305.51685 * 1 2 3 28 28 H 1.08998 * 109.47046 * 294.49831 * 5 2 1 29 29 H 1.09001 * 109.47219 * 54.49272 * 5 2 1 30 30 H 1.08998 * 109.47300 * 54.84531 * 7 6 5 31 31 H 1.09006 * 109.47138 * 174.84047 * 7 6 5 32 32 H 0.97001 * 119.99681 * 0.02562 * 10 8 7 33 33 H 1.08999 * 109.47419 * 300.00395 * 11 10 8 34 34 H 1.09005 * 109.46517 * 60.00081 * 11 10 8 35 35 H 1.09006 * 109.46842 * 300.00225 * 12 11 10 36 36 H 1.08996 * 109.46914 * 60.00357 * 12 11 10 37 37 H 1.09006 * 109.46902 * 299.99525 * 13 12 11 38 38 H 1.09003 * 109.47782 * 59.99436 * 13 12 11 39 39 H 0.97000 * 120.00073 * 359.97438 * 14 13 12 40 40 H 0.96995 * 119.99911 * 179.97438 * 18 17 15 41 41 H 1.09005 * 117.49419 * 0.02562 * 23 6 5 42 42 H 1.08992 * 117.49601 * 145.02042 * 23 6 5 43 43 H 1.09001 * 117.49382 * 252.50838 * 24 23 6 44 44 H 1.09001 * 117.50139 * 107.48953 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2669 -0.8841 -1.0160 5 6 2.1887 -0.7356 1.6153 6 6 3.6988 -0.9455 1.7422 7 6 4.2178 -2.3060 1.2726 8 6 3.6663 -3.3889 2.1638 9 8 3.0021 -3.0950 3.1352 10 7 3.9113 -4.6838 1.8815 11 6 3.3757 -5.7364 2.7482 12 6 3.7970 -7.1048 2.2087 13 6 3.2371 -8.2041 3.1135 14 7 3.6410 -9.5143 2.5973 15 6 3.2542 -10.6555 3.2480 16 1 2.6518 -10.5897 4.1419 17 6 3.6374 -11.8969 2.7591 18 7 4.3721 -11.9772 1.6700 19 14 3.1105 -13.4536 3.6470 20 1 1.6276 -13.5246 3.6840 21 1 3.6446 -14.6383 2.9284 22 1 3.6398 -13.4355 5.0344 23 6 4.4056 -0.2913 2.9312 24 6 4.6020 0.2697 1.5214 25 1 -0.3633 0.4259 -0.9353 26 1 -0.3633 -1.0229 0.0987 27 1 -0.3633 0.5970 0.8364 28 1 1.8468 -0.0683 2.4065 29 1 1.6798 -1.6953 1.7044 30 1 3.8975 -2.4823 0.2458 31 1 5.3068 -2.3156 1.3202 32 1 4.4429 -4.9186 1.1049 33 1 3.7652 -5.6088 3.7582 34 1 2.2877 -5.6723 2.7676 35 1 3.4077 -7.2326 1.1986 36 1 4.8849 -7.1685 2.1897 37 1 3.6260 -8.0764 4.1238 38 1 2.1491 -8.1403 3.1324 39 1 4.1824 -9.5734 1.7946 40 1 4.6401 -12.8446 1.3286 41 1 3.7945 0.2882 3.6232 42 1 5.2403 -0.8303 3.3792 43 1 5.5660 0.0998 1.0419 44 1 4.1202 1.2186 1.2857 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157980764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:14 Heat of formation + Delta-G solvation = -106.269857 kcal Electronic energy + Delta-G solvation = -24226.125246 eV Core-core repulsion = 20498.782265 eV Total energy + Delta-G solvation = -3727.342981 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.01448 -38.86184 -37.95552 -37.40996 -36.96187 -35.82676 -33.76887 -31.73985 -30.87852 -30.22999 -29.35415 -26.77376 -24.41068 -23.42594 -22.56916 -21.81578 -20.45519 -19.71465 -19.16819 -17.95278 -17.46731 -17.30737 -17.12787 -16.89754 -16.73837 -16.42910 -16.00104 -15.83261 -15.29382 -15.09308 -14.99365 -14.44631 -14.07753 -13.99536 -13.95035 -13.59008 -13.40732 -13.28495 -13.00354 -12.95784 -12.79844 -12.67865 -12.55824 -12.43059 -12.35605 -12.21196 -12.09894 -12.02474 -11.80653 -11.78899 -11.43762 -10.94031 -10.87379 -10.44126 -10.04316 -9.02578 -7.96906 -5.26308 -0.92165 1.47478 1.50593 1.56838 1.67697 1.86618 2.12825 2.55845 2.69026 2.82077 3.10084 3.36744 3.48613 3.57491 3.72109 3.77755 3.86470 4.06857 4.09162 4.10676 4.18064 4.29903 4.40432 4.48021 4.55674 4.66169 4.72614 4.74850 4.79735 4.81715 4.90416 4.94270 5.05388 5.09398 5.22609 5.29340 5.31925 5.46762 5.48205 6.25721 6.59447 7.28089 7.32025 8.07095 8.30535 9.26410 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026578 B = 0.001991 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.244356 B =14058.506665 C =14474.797546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.420 3.580 3 O -0.972 6.972 4 O -0.976 6.976 5 C -0.562 4.562 6 C -0.120 4.120 7 C -0.115 4.115 8 C 0.510 3.490 9 O -0.567 6.567 10 N -0.723 5.723 11 C 0.134 3.866 12 C -0.120 4.120 13 C 0.152 3.848 14 N -0.748 5.748 15 C -0.251 4.251 16 H 0.075 0.925 17 C -0.076 4.076 18 N -0.969 5.969 19 Si 0.976 3.024 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.277 1.277 23 C -0.145 4.145 24 C -0.189 4.189 25 H 0.138 0.862 26 H 0.145 0.855 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.140 0.860 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.414 0.586 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.021 0.979 38 H 0.022 0.978 39 H 0.375 0.625 40 H 0.253 0.747 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.264 29.953 -2.590 30.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.607 3.393 3 O -0.970 6.970 4 O -0.973 6.973 5 C -0.691 4.691 6 C -0.121 4.121 7 C -0.154 4.154 8 C 0.298 3.702 9 O -0.447 6.447 10 N -0.376 5.376 11 C 0.010 3.990 12 C -0.158 4.158 13 C 0.026 3.974 14 N -0.391 5.391 15 C -0.383 4.383 16 H 0.093 0.907 17 C -0.268 4.268 18 N -0.619 5.619 19 Si 0.804 3.196 20 H -0.203 1.203 21 H -0.220 1.220 22 H -0.203 1.203 23 C -0.183 4.183 24 C -0.226 4.226 25 H 0.157 0.843 26 H 0.163 0.837 27 H 0.171 0.829 28 H 0.173 0.827 29 H 0.158 0.842 30 H 0.136 0.864 31 H 0.143 0.857 32 H 0.251 0.749 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.207 0.793 40 H 0.061 0.939 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.136 0.864 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.253 30.364 -2.440 30.758 hybrid contribution -0.319 -1.657 0.380 1.730 sum -4.572 28.707 -2.060 29.142 Atomic orbital electron populations 1.30197 1.23088 1.13494 1.13423 1.07696 0.79494 0.74702 0.77429 1.93529 1.80494 1.35937 1.87011 1.93534 1.80638 1.67402 1.55767 1.29855 1.02045 1.14810 1.22396 1.20535 0.90368 0.93677 1.07569 1.21443 1.03725 0.89936 1.00331 1.20994 0.79848 0.83716 0.85670 1.90676 1.40714 1.83119 1.30156 1.46032 1.55164 1.05499 1.30873 1.21060 0.98723 0.85377 0.93864 1.21715 1.01696 0.92477 0.99931 1.20679 0.96768 0.84297 0.95703 1.42554 1.63456 1.01235 1.31832 1.19613 1.26050 0.85903 1.06688 0.90700 1.25610 1.01322 1.00847 0.99045 1.69800 1.42897 1.24226 1.25003 0.85181 0.77932 0.78737 0.77724 1.20327 1.21987 1.20349 1.23072 1.02411 1.02013 0.90802 1.23707 1.01777 0.96580 1.00507 0.84315 0.83700 0.82933 0.82685 0.84222 0.86435 0.85711 0.74920 0.92060 0.91850 0.90855 0.90905 0.96089 0.95990 0.79262 0.93874 0.87717 0.88249 0.86383 0.86682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.56 10.62 113.37 1.20 -2.35 16 2 S 2.42 31.26 5.06 -56.49 -0.29 30.98 16 3 O -0.97 -18.18 16.18 -127.37 -2.06 -20.24 16 4 O -0.98 -19.88 17.61 -127.37 -2.24 -22.12 16 5 C -0.56 -6.94 5.46 71.98 0.39 -6.54 16 6 C -0.12 -1.85 1.09 -52.18 -0.06 -1.90 16 7 C -0.11 -1.76 5.58 29.85 0.17 -1.59 16 8 C 0.51 10.79 7.39 87.66 0.65 11.43 16 9 O -0.57 -15.54 14.89 -3.04 -0.05 -15.59 16 10 N -0.72 -14.53 5.56 -463.05 -2.57 -17.10 16 11 C 0.13 3.33 5.67 86.38 0.49 3.82 16 12 C -0.12 -3.45 5.44 30.59 0.17 -3.29 16 13 C 0.15 5.92 6.26 86.38 0.54 6.46 16 14 N -0.75 -37.89 5.60 -343.46 -1.92 -39.82 16 15 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 16 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 17 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 18 N -0.97 -59.04 13.06 21.65 0.28 -58.76 16 19 Si 0.98 45.96 29.55 68.60 2.03 47.99 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 23 C -0.15 -2.11 9.81 30.60 0.30 -1.81 16 24 C -0.19 -2.61 9.33 30.59 0.29 -2.32 16 25 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.16 1.21 7.87 -2.39 -0.02 1.19 16 29 H 0.14 1.77 6.83 -2.39 -0.02 1.75 16 30 H 0.12 1.66 7.67 -2.39 -0.02 1.64 16 31 H 0.12 1.36 8.09 -2.38 -0.02 1.34 16 32 H 0.41 6.29 8.47 -92.71 -0.79 5.51 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.02 0.82 8.14 -2.38 -0.02 0.81 16 38 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.38 19.94 7.67 -92.71 -0.71 19.23 16 40 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 41 H 0.10 1.38 8.03 -2.38 -0.02 1.36 16 42 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.11 1.72 6.38 -2.39 -0.02 1.70 16 Total: -1.00 -80.26 377.70 -1.87 -82.13 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: -0.49 Total: 27.77 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 5.44 Total: -15.24 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -4.21 Total: -115.68 kcal Atomic # 8 Polarization: -53.60 SS G_CDS: -4.35 Total: -57.95 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Atomic # 16 Polarization: 31.26 SS G_CDS: -0.29 Total: 30.98 kcal Total: -80.26 -1.87 -82.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157980764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.142 kcal (2) G-P(sol) polarization free energy of solvation -80.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds