Wall clock time and date at job start Fri Apr 10 2020 18:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42096 * 108.58065 * 2 1 4 4 O 1.42100 * 108.58262 * 228.96928 * 2 1 3 5 5 C 1.81410 * 101.91769 * 114.48406 * 2 1 3 6 6 C 1.53007 * 109.46944 * 179.97438 * 5 2 1 7 7 C 1.52992 * 109.47013 * 180.02562 * 6 5 2 8 8 C 1.50700 * 109.47150 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00130 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99750 * 179.97438 * 8 7 6 11 11 C 1.46919 * 120.63395 * 0.02562 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.29715 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 15 15 H 1.08994 * 109.50232 * 301.42239 * 14 13 12 16 16 N 1.46504 * 109.49920 * 181.32179 * 14 13 12 17 17 C 1.36937 * 119.99539 * 85.16230 * 16 14 13 18 18 H 1.08007 * 120.00317 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00107 * 179.97438 * 17 16 14 20 20 N 1.31620 * 119.99819 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00343 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46959 * 90.00073 * 21 19 17 23 23 H 1.48500 * 109.47194 * 210.00110 * 21 19 17 24 24 H 1.48502 * 109.47187 * 330.00254 * 21 19 17 25 25 C 1.46933 * 120.62602 * 179.97438 * 10 8 7 26 26 H 1.08992 * 109.46951 * 305.51683 * 1 2 3 27 27 H 1.09001 * 109.46619 * 65.51225 * 1 2 3 28 28 H 1.08995 * 109.46956 * 185.51639 * 1 2 3 29 29 H 1.09000 * 109.46752 * 60.00362 * 5 2 1 30 30 H 1.08992 * 109.47020 * 299.99828 * 5 2 1 31 31 H 1.09003 * 109.46787 * 59.99940 * 6 5 2 32 32 H 1.09001 * 109.47108 * 300.00444 * 6 5 2 33 33 H 1.09003 * 109.47495 * 60.00249 * 7 6 5 34 34 H 1.09001 * 109.47444 * 300.00113 * 7 6 5 35 35 H 1.09002 * 109.58751 * 246.15665 * 11 10 8 36 36 H 1.08996 * 109.58750 * 6.43850 * 11 10 8 37 37 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 38 38 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 39 39 H 1.08999 * 109.41979 * 178.67448 * 13 12 11 40 40 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 41 41 H 0.96994 * 120.00489 * 265.15959 * 16 14 13 42 42 H 0.96997 * 120.00586 * 179.97438 * 20 19 17 43 43 H 1.08994 * 109.58580 * 353.42544 * 25 10 8 44 44 H 1.09006 * 109.57831 * 113.70037 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2669 -0.8842 -1.0161 5 6 2.1886 -0.7356 1.6154 6 6 3.7054 -0.8196 1.7981 7 6 4.0214 -1.4405 3.1602 8 6 5.5153 -1.5226 3.3405 9 8 6.2546 -1.1242 2.4654 10 7 6.0299 -2.0389 4.4742 11 6 5.1473 -2.5262 5.5429 12 6 5.5358 -3.9672 5.8885 13 6 7.0296 -4.0171 6.2313 14 6 7.8499 -3.5703 5.0190 15 1 7.6300 -4.2196 4.1716 16 7 9.2775 -3.6490 5.3387 17 6 9.9487 -4.8329 5.1872 18 1 9.4259 -5.7085 4.8316 19 6 11.3015 -4.9074 5.4895 20 7 11.9388 -3.8402 5.9223 21 14 12.2174 -6.5221 5.2822 22 1 12.7741 -6.6024 3.9078 23 1 13.3242 -6.5937 6.2696 24 1 11.2819 -7.6539 5.5042 25 6 7.4843 -2.1261 4.6642 26 1 -0.3633 0.5970 0.8364 27 1 -0.3632 0.4260 -0.9353 28 1 -0.3633 -1.0229 0.0988 29 1 1.7610 -1.7369 1.6666 30 1 1.7610 -0.1170 2.4043 31 1 4.1335 0.1816 1.7467 32 1 4.1328 -1.4384 1.0091 33 1 3.5934 -2.4417 3.2112 34 1 3.5940 -0.8221 3.9495 35 1 5.2593 -1.8959 6.4251 36 1 4.1121 -2.4984 5.2030 37 1 4.9513 -4.3064 6.7437 38 1 5.3376 -4.6127 5.0328 39 1 7.3057 -5.0365 6.5008 40 1 7.2312 -3.3521 7.0711 41 1 9.7471 -2.8625 5.6576 42 1 12.8840 -3.8922 6.1340 43 1 7.9910 -1.8365 3.7437 44 1 7.7875 -1.4611 5.4730 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210098649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:29 Heat of formation + Delta-G solvation = -100.990580 kcal Electronic energy + Delta-G solvation = -24671.155916 eV Core-core repulsion = 20944.041861 eV Total energy + Delta-G solvation = -3727.114054 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.10294 -37.48493 -37.32324 -36.37314 -34.94096 -34.49103 -32.21825 -31.29169 -30.19898 -29.25630 -27.85465 -25.13526 -23.91156 -22.42950 -22.08471 -20.07240 -19.28930 -18.80281 -17.32597 -17.20606 -16.88862 -16.74628 -16.22270 -15.86321 -15.45207 -14.94762 -14.45821 -14.09292 -13.99267 -13.84500 -13.69412 -13.56691 -13.31488 -13.08705 -12.91967 -12.91217 -12.42384 -12.34256 -12.29391 -12.26437 -12.13898 -11.43670 -11.25749 -11.13351 -10.97595 -10.91884 -10.86223 -10.65275 -10.43406 -10.37715 -10.09291 -9.76739 -9.59445 -8.92500 -8.43120 -7.00162 -5.78561 -3.08336 -0.44463 2.33990 2.70463 3.02244 3.28851 3.43270 3.48371 3.49695 3.57822 4.10156 4.20636 4.30150 4.54244 4.55413 4.58229 4.70371 4.88561 4.91825 5.07888 5.10794 5.14857 5.25129 5.27137 5.49490 5.54667 5.61214 5.66962 5.72707 5.78657 5.80715 6.00438 6.14033 6.21468 6.36170 6.52327 6.67429 6.85617 7.02261 7.54461 7.68215 8.27392 8.39458 9.50506 10.05644 10.40660 11.43897 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025273 B = 0.002291 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.622796 B =12218.250468 C =12638.870874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.421 3.579 3 O -0.937 6.937 4 O -0.936 6.936 5 C -0.611 4.611 6 C -0.099 4.099 7 C -0.131 4.131 8 C 0.508 3.492 9 O -0.540 6.540 10 N -0.606 5.606 11 C 0.107 3.893 12 C -0.134 4.134 13 C -0.137 4.137 14 C 0.169 3.831 15 H 0.050 0.950 16 N -0.721 5.721 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.105 3.895 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.093 0.907 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.502 6.556 -3.918 29.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.603 3.397 3 O -0.934 6.934 4 O -0.933 6.933 5 C -0.740 4.740 6 C -0.138 4.138 7 C -0.172 4.172 8 C 0.296 3.704 9 O -0.417 6.417 10 N -0.339 5.339 11 C -0.016 4.016 12 C -0.173 4.173 13 C -0.178 4.178 14 C 0.058 3.942 15 H 0.068 0.932 16 N -0.362 5.362 17 C -0.370 4.370 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.018 4.018 26 H 0.146 0.854 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.218 0.782 42 H 0.066 0.934 43 H 0.111 0.889 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -27.453 6.905 -5.089 28.762 hybrid contribution -0.019 -1.038 0.923 1.389 sum -27.472 5.867 -4.166 28.398 Atomic orbital electron populations 1.30302 1.27196 1.11486 1.11766 1.07869 0.78117 0.75926 0.77826 1.93615 1.78829 1.34501 1.86484 1.93621 1.78795 1.66982 1.53935 1.30365 1.06370 1.14013 1.23244 1.21082 0.89653 1.04271 0.98766 1.21632 0.93668 1.03365 0.98531 1.20556 0.90629 0.77648 0.81566 1.90731 1.61515 1.48187 1.41236 1.48138 1.07771 1.60944 1.17090 1.21772 0.93381 0.95894 0.90554 1.21995 0.98526 0.95381 1.01387 1.22342 0.92447 1.02524 1.00498 1.20456 0.86043 0.92894 0.94844 0.93231 1.42311 1.03178 1.11559 1.79166 1.19198 0.91669 0.88882 1.37288 0.91173 1.24759 0.96701 0.97393 1.02009 1.69659 1.09565 1.27725 1.51002 0.86179 0.79530 0.82984 0.77407 1.21640 1.21766 1.20783 1.22004 0.78376 0.98538 1.02847 0.85393 0.85292 0.85367 0.84816 0.84858 0.89221 0.89159 0.88495 0.88621 0.91349 0.90330 0.91317 0.91857 0.91563 0.92476 0.78179 0.93439 0.88877 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.50 10.62 101.05 1.07 -0.42 16 2 S 2.42 15.39 5.36 -107.50 -0.58 14.81 16 3 O -0.94 -10.00 18.10 -57.83 -1.05 -11.05 16 4 O -0.94 -10.18 18.10 -57.83 -1.05 -11.22 16 5 C -0.61 -2.65 5.81 37.16 0.22 -2.44 16 6 C -0.10 -0.89 4.51 -26.73 -0.12 -1.01 16 7 C -0.13 -1.14 4.05 -27.89 -0.11 -1.25 16 8 C 0.51 7.24 7.70 -10.98 -0.08 7.15 16 9 O -0.54 -10.09 15.40 5.56 0.09 -10.00 16 10 N -0.61 -8.52 2.97 -172.79 -0.51 -9.03 16 11 C 0.11 1.10 6.33 -3.71 -0.02 1.08 16 12 C -0.13 -1.58 6.11 -26.45 -0.16 -1.74 16 13 C -0.14 -2.28 5.47 -26.53 -0.15 -2.42 16 14 C 0.17 3.32 2.92 -67.83 -0.20 3.13 16 15 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 16 N -0.72 -17.97 5.12 -53.33 -0.27 -18.25 16 17 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 21 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.11 1.85 5.90 -3.73 -0.02 1.83 16 26 H 0.13 0.05 8.14 -51.93 -0.42 -0.37 16 27 H 0.13 0.29 8.14 -51.92 -0.42 -0.14 16 28 H 0.13 0.06 8.14 -51.93 -0.42 -0.36 16 29 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 30 H 0.13 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 32 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.10 0.63 7.70 -51.93 -0.40 0.23 16 34 H 0.10 0.58 7.94 -51.93 -0.41 0.17 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.54 5.93 -51.93 -0.31 0.24 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.38 10.16 7.80 -40.82 -0.32 9.84 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.09 1.88 7.00 -51.93 -0.36 1.52 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 370.18 15.07 5.58 5.58 Total: -1.00 -39.42 370.18 -9.17 -48.60 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -7.26 Total: 3.85 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 0.18 Total: -3.32 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.06 Total: -54.68 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -2.01 Total: -32.27 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 16 Polarization: 15.39 SS G_CDS: -0.58 Total: 14.81 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.42 -9.17 -48.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210098649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.391 kcal (2) G-P(sol) polarization free energy of solvation -39.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds