Wall clock time and date at job start Fri Apr 10 2020 18:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42096 * 108.58065 * 2 1 4 4 O 1.42100 * 108.58262 * 228.96928 * 2 1 3 5 5 C 1.81410 * 101.91769 * 114.48406 * 2 1 3 6 6 C 1.53007 * 109.46944 * 179.97438 * 5 2 1 7 7 C 1.52992 * 109.47013 * 180.02562 * 6 5 2 8 8 C 1.50700 * 109.47150 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00130 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99750 * 179.97438 * 8 7 6 11 11 C 1.46919 * 120.63395 * 0.02562 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.29715 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 15 15 H 1.08994 * 109.50232 * 301.42239 * 14 13 12 16 16 N 1.46504 * 109.49920 * 181.32179 * 14 13 12 17 17 C 1.36937 * 119.99539 * 85.16230 * 16 14 13 18 18 H 1.08007 * 120.00317 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00107 * 179.97438 * 17 16 14 20 20 N 1.31620 * 119.99819 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00343 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46959 * 90.00073 * 21 19 17 23 23 H 1.48500 * 109.47194 * 210.00110 * 21 19 17 24 24 H 1.48502 * 109.47187 * 330.00254 * 21 19 17 25 25 C 1.46933 * 120.62602 * 179.97438 * 10 8 7 26 26 H 1.08992 * 109.46951 * 305.51683 * 1 2 3 27 27 H 1.09001 * 109.46619 * 65.51225 * 1 2 3 28 28 H 1.08995 * 109.46956 * 185.51639 * 1 2 3 29 29 H 1.09000 * 109.46752 * 60.00362 * 5 2 1 30 30 H 1.08992 * 109.47020 * 299.99828 * 5 2 1 31 31 H 1.09003 * 109.46787 * 59.99940 * 6 5 2 32 32 H 1.09001 * 109.47108 * 300.00444 * 6 5 2 33 33 H 1.09003 * 109.47495 * 60.00249 * 7 6 5 34 34 H 1.09001 * 109.47444 * 300.00113 * 7 6 5 35 35 H 1.09002 * 109.58751 * 246.15665 * 11 10 8 36 36 H 1.08996 * 109.58750 * 6.43850 * 11 10 8 37 37 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 38 38 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 39 39 H 1.08999 * 109.41979 * 178.67448 * 13 12 11 40 40 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 41 41 H 0.96994 * 120.00489 * 265.15959 * 16 14 13 42 42 H 0.96997 * 120.00586 * 179.97438 * 20 19 17 43 43 H 1.08994 * 109.58580 * 353.42544 * 25 10 8 44 44 H 1.09006 * 109.57831 * 113.70037 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2669 -0.8842 -1.0161 5 6 2.1886 -0.7356 1.6154 6 6 3.7054 -0.8196 1.7981 7 6 4.0214 -1.4405 3.1602 8 6 5.5153 -1.5226 3.3405 9 8 6.2546 -1.1242 2.4654 10 7 6.0299 -2.0389 4.4742 11 6 5.1473 -2.5262 5.5429 12 6 5.5358 -3.9672 5.8885 13 6 7.0296 -4.0171 6.2313 14 6 7.8499 -3.5703 5.0190 15 1 7.6300 -4.2196 4.1716 16 7 9.2775 -3.6490 5.3387 17 6 9.9487 -4.8329 5.1872 18 1 9.4259 -5.7085 4.8316 19 6 11.3015 -4.9074 5.4895 20 7 11.9388 -3.8402 5.9223 21 14 12.2174 -6.5221 5.2822 22 1 12.7741 -6.6024 3.9078 23 1 13.3242 -6.5937 6.2696 24 1 11.2819 -7.6539 5.5042 25 6 7.4843 -2.1261 4.6642 26 1 -0.3633 0.5970 0.8364 27 1 -0.3632 0.4260 -0.9353 28 1 -0.3633 -1.0229 0.0988 29 1 1.7610 -1.7369 1.6666 30 1 1.7610 -0.1170 2.4043 31 1 4.1335 0.1816 1.7467 32 1 4.1328 -1.4384 1.0091 33 1 3.5934 -2.4417 3.2112 34 1 3.5940 -0.8221 3.9495 35 1 5.2593 -1.8959 6.4251 36 1 4.1121 -2.4984 5.2030 37 1 4.9513 -4.3064 6.7437 38 1 5.3376 -4.6127 5.0328 39 1 7.3057 -5.0365 6.5008 40 1 7.2312 -3.3521 7.0711 41 1 9.7471 -2.8625 5.6576 42 1 12.8840 -3.8922 6.1340 43 1 7.9910 -1.8365 3.7437 44 1 7.7875 -1.4611 5.4730 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210098649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:28 Heat of formation + Delta-G solvation = -133.442913 kcal Electronic energy + Delta-G solvation = -24672.563155 eV Core-core repulsion = 20944.041861 eV Total energy + Delta-G solvation = -3728.521293 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.24615 -38.79232 -37.93930 -36.98382 -36.21311 -35.61944 -33.83109 -32.73453 -30.71874 -30.27733 -28.95952 -26.30932 -25.72691 -23.40960 -23.22325 -21.41584 -20.09157 -19.69155 -19.15024 -18.27755 -17.53391 -17.30973 -16.91951 -16.76008 -16.56410 -16.48656 -15.73399 -15.47379 -15.15488 -15.09049 -14.74527 -14.38233 -14.08331 -13.96910 -13.83372 -13.65797 -13.50076 -13.17383 -13.00587 -12.95961 -12.93607 -12.90020 -12.86298 -12.33744 -12.19188 -12.11861 -11.89469 -11.86773 -11.83898 -11.71591 -11.62589 -11.29959 -10.93247 -10.77572 -9.66239 -9.05202 -7.97948 -5.27716 -0.85886 1.44141 1.46956 1.54696 1.63686 1.97933 1.98167 2.54257 2.82947 3.19150 3.34878 3.45167 3.79290 3.89463 3.90096 3.95410 4.02358 4.15637 4.17512 4.25057 4.29415 4.30731 4.37023 4.48501 4.58064 4.68945 4.74640 4.80542 4.84353 4.91708 4.97889 5.04746 5.08840 5.15986 5.19770 5.40990 5.42841 5.53209 5.59977 6.23760 6.48186 7.19269 7.29277 8.02555 8.26487 9.25418 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025273 B = 0.002291 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.622796 B =12218.250468 C =12638.870874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.630 4.630 2 S 2.402 3.598 3 O -0.998 6.998 4 O -0.999 6.999 5 C -0.588 4.588 6 C -0.112 4.112 7 C -0.120 4.120 8 C 0.496 3.504 9 O -0.600 6.600 10 N -0.606 5.606 11 C 0.102 3.898 12 C -0.125 4.125 13 C -0.129 4.129 14 C 0.167 3.833 15 H 0.029 0.971 16 N -0.737 5.737 17 C -0.239 4.239 18 H 0.073 0.927 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.974 3.026 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.267 1.267 25 C 0.117 3.883 26 H 0.159 0.841 27 H 0.130 0.870 28 H 0.158 0.842 29 H 0.174 0.826 30 H 0.176 0.824 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.083 0.917 36 H 0.131 0.869 37 H 0.105 0.895 38 H 0.063 0.937 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.373 0.627 42 H 0.252 0.748 43 H 0.054 0.946 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.488 5.405 -2.054 33.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.783 4.783 2 S 2.592 3.408 3 O -0.995 6.995 4 O -0.996 6.996 5 C -0.719 4.719 6 C -0.151 4.151 7 C -0.160 4.160 8 C 0.286 3.714 9 O -0.481 6.481 10 N -0.338 5.338 11 C -0.018 4.018 12 C -0.163 4.163 13 C -0.169 4.169 14 C 0.058 3.942 15 H 0.047 0.953 16 N -0.377 5.377 17 C -0.371 4.371 18 H 0.091 0.909 19 C -0.269 4.269 20 N -0.620 5.620 21 Si 0.803 3.197 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.192 1.192 25 C -0.008 4.008 26 H 0.177 0.823 27 H 0.149 0.851 28 H 0.176 0.824 29 H 0.192 0.808 30 H 0.194 0.806 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.102 0.898 36 H 0.149 0.851 37 H 0.123 0.877 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.204 0.796 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -32.486 5.743 -3.240 33.149 hybrid contribution 1.425 -0.665 0.347 1.610 sum -31.061 5.078 -2.893 31.606 Atomic orbital electron populations 1.30032 1.20720 1.14183 1.13349 1.07883 0.80455 0.74217 0.78288 1.93541 1.81333 1.37112 1.87493 1.93545 1.81350 1.67692 1.57052 1.30163 1.02935 1.16938 1.21866 1.21089 0.93073 1.02405 0.98569 1.21764 0.88767 1.06285 0.99178 1.21781 0.93132 0.76098 0.80359 1.90713 1.63529 1.50620 1.43257 1.48263 1.06208 1.60952 1.18414 1.22164 0.94987 0.94633 0.90065 1.21967 0.94651 0.96853 1.02875 1.22133 0.95783 1.00768 0.98257 1.20632 0.83991 0.93948 0.95652 0.95259 1.42517 1.05441 1.10375 1.79400 1.19544 0.92061 0.89773 1.35705 0.90880 1.25590 0.97719 1.00751 1.02804 1.69817 1.09468 1.29790 1.52876 0.85133 0.78184 0.79537 0.76865 1.21764 1.21945 1.19161 1.21522 0.81504 0.96926 1.00829 0.82308 0.85139 0.82418 0.80809 0.80581 0.91783 0.92149 0.84743 0.84319 0.89828 0.85098 0.87683 0.91845 0.93763 0.92632 0.79564 0.93965 0.92709 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -0.21 10.62 113.37 1.20 0.99 16 2 S 2.40 28.45 5.36 -56.49 -0.30 28.15 16 3 O -1.00 -22.27 18.10 -127.37 -2.30 -24.57 16 4 O -1.00 -22.84 18.10 -127.37 -2.31 -25.14 16 5 C -0.59 -2.68 5.81 71.98 0.42 -2.26 16 6 C -0.11 -1.87 4.51 30.59 0.14 -1.73 16 7 C -0.12 -1.57 4.05 29.85 0.12 -1.45 16 8 C 0.50 13.61 7.70 87.66 0.67 14.29 16 9 O -0.60 -23.72 15.40 -3.03 -0.05 -23.77 16 10 N -0.61 -16.08 2.97 -818.98 -2.44 -18.51 16 11 C 0.10 1.61 6.33 86.36 0.55 2.16 16 12 C -0.12 -2.45 6.11 30.78 0.19 -2.26 16 13 C -0.13 -4.15 5.47 30.72 0.17 -3.98 16 14 C 0.17 6.77 2.92 45.05 0.13 6.90 16 15 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 16 N -0.74 -38.33 5.12 -322.64 -1.65 -39.99 16 17 C -0.24 -13.59 9.93 84.03 0.83 -12.76 16 18 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 19 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 20 N -0.97 -60.51 13.06 21.65 0.28 -60.23 16 21 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 22 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 23 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 C 0.12 4.27 5.90 86.35 0.51 4.78 16 26 H 0.16 -0.81 8.14 -2.39 -0.02 -0.83 16 27 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.16 -0.76 8.14 -2.39 -0.02 -0.78 16 29 H 0.17 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H 0.18 -0.63 8.14 -2.39 -0.02 -0.65 16 31 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 32 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 33 H 0.13 0.84 7.70 -2.39 -0.02 0.82 16 34 H 0.14 0.71 7.94 -2.39 -0.02 0.69 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.13 0.79 5.93 -2.39 -0.01 0.78 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.37 20.77 7.80 -92.71 -0.72 20.05 16 42 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 43 H 0.05 2.41 7.00 -2.39 -0.02 2.39 16 44 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -97.34 370.18 -1.07 -98.41 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.26 Total: 15.90 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: 5.40 Total: 0.67 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -3.81 Total: -118.73 kcal Atomic # 8 Polarization: -68.83 SS G_CDS: -4.66 Total: -73.49 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Atomic # 16 Polarization: 28.45 SS G_CDS: -0.30 Total: 28.15 kcal Total: -97.34 -1.07 -98.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210098649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.032 kcal (2) G-P(sol) polarization free energy of solvation -97.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds