Wall clock time and date at job start Fri Apr 10 2020 18:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34773 * 120.00034 * 2 1 4 4 O 1.21509 * 119.99649 * 183.62761 * 3 2 1 5 5 C 1.48223 * 120.00178 * 3.63057 * 3 2 1 6 6 C 1.39633 * 119.65165 * 173.14918 * 5 3 2 7 7 C 1.38538 * 119.24364 * 179.72779 * 6 5 3 8 8 C 1.38590 * 118.55524 * 0.53800 * 7 6 5 9 9 C 1.39585 * 119.24307 * 359.72547 * 8 7 6 10 10 C 1.48224 * 119.65169 * 179.97438 * 9 8 7 11 11 N 1.34785 * 120.00186 * 180.02562 * 10 9 8 12 12 O 1.21511 * 120.00248 * 0.02593 * 10 9 8 13 13 N 1.32340 * 119.65361 * 353.42539 * 5 3 2 14 14 C 1.46501 * 119.99416 * 180.02562 * 2 1 3 15 15 C 1.53775 * 113.61567 * 328.31663 * 14 2 1 16 16 C 1.53951 * 87.02303 * 89.23058 * 15 14 2 17 17 N 1.46498 * 113.74495 * 139.94203 * 16 15 14 18 18 C 1.36939 * 120.00154 * 107.40017 * 17 16 15 19 19 H 1.08003 * 119.99564 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00287 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99824 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00063 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47048 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47120 * 119.99773 * 22 20 18 25 25 H 1.48498 * 109.46897 * 240.00172 * 22 20 18 26 26 C 1.53777 * 87.11111 * 25.36194 * 16 15 14 27 27 H 1.08997 * 109.47289 * 203.97590 * 1 2 3 28 28 H 1.09000 * 109.46477 * 323.97515 * 1 2 3 29 29 H 1.08994 * 109.47132 * 83.97400 * 1 2 3 30 30 H 1.08005 * 120.37378 * 0.02562 * 6 5 3 31 31 H 1.07997 * 120.72367 * 180.24258 * 7 6 5 32 32 H 1.07994 * 120.37640 * 179.74975 * 8 7 6 33 33 H 0.96999 * 119.99760 * 359.97438 * 11 10 9 34 34 H 0.96998 * 119.99938 * 180.02562 * 11 10 9 35 35 H 1.08996 * 112.84740 * 197.11440 * 14 2 1 36 36 H 1.09004 * 113.61471 * 203.75006 * 15 14 2 37 37 H 1.08998 * 113.61509 * 334.65015 * 15 14 2 38 38 H 1.08998 * 113.53929 * 270.80915 * 16 15 14 39 39 H 0.97004 * 120.00351 * 287.40129 * 17 16 15 40 40 H 0.96997 * 120.00339 * 180.02562 * 21 20 18 41 41 H 1.08999 * 113.61611 * 220.09162 * 26 16 15 42 42 H 1.08998 * 113.61478 * 89.18781 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3522 1.1681 -0.0666 5 6 1.4001 2.4495 0.0813 6 6 2.1061 3.6456 0.2255 7 6 1.4073 4.8398 0.2949 8 6 0.0234 4.8024 0.2295 9 6 -0.6196 3.5713 0.0908 10 6 -2.0993 3.5206 0.0205 11 7 -2.7276 2.3356 -0.1128 12 8 -2.7461 4.5474 0.0832 13 7 0.0780 2.4484 0.0219 14 6 2.1974 -1.2688 -0.0006 15 6 1.4670 -2.4020 0.7389 16 6 0.7901 -2.7333 -0.6035 17 7 0.6638 -4.1698 -0.8619 18 6 -0.5622 -4.7745 -0.7829 19 1 -1.4362 -4.1923 -0.5305 20 6 -0.6818 -6.1358 -1.0272 21 7 0.3833 -6.8453 -1.3342 22 14 -2.3545 -6.9605 -0.9201 23 1 -3.3822 -5.9507 -0.5604 24 1 -2.6929 -7.5657 -2.2332 25 1 -2.3180 -8.0208 0.1190 26 6 2.0075 -2.0891 -1.2874 27 1 -0.3634 -0.9390 0.4176 28 1 -0.3632 0.8312 0.6044 29 1 -0.3633 0.1079 -1.0219 30 1 3.1848 3.6401 0.2774 31 1 1.9293 5.7791 0.4024 32 1 -0.5508 5.7153 0.2848 33 1 -2.2113 1.5160 -0.1632 34 1 -3.6959 2.3026 -0.1592 35 1 3.2404 -1.1556 0.2951 36 1 2.1312 -3.1879 1.0987 37 1 0.7742 -2.0494 1.5030 38 1 -0.1407 -2.1904 -0.7674 39 1 1.4487 -4.6927 -1.0889 40 1 0.2998 -7.7964 -1.5052 41 1 1.7505 -1.4842 -2.1569 42 1 2.8198 -2.7892 -1.4827 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999908930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:43 Heat of formation + Delta-G solvation = 28.072031 kcal Electronic energy + Delta-G solvation = -26386.297426 eV Core-core repulsion = 22561.628746 eV Total energy + Delta-G solvation = -3824.668680 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.40541 -40.10082 -39.06670 -37.92204 -34.91830 -34.19024 -33.32645 -32.55877 -31.79513 -29.98262 -27.29318 -25.61965 -25.32704 -25.09454 -24.05584 -22.34786 -21.43957 -20.50084 -18.89449 -18.24462 -17.73750 -17.23533 -17.10832 -16.56943 -16.09481 -15.91873 -15.63719 -15.19048 -14.93287 -14.76466 -14.37903 -13.93235 -13.85356 -13.71936 -13.37264 -13.00531 -12.73409 -12.53908 -12.38855 -11.89524 -11.64016 -11.57404 -10.95723 -10.89452 -10.83045 -10.53317 -10.40454 -10.32887 -10.20001 -10.07286 -9.92972 -9.69125 -9.54009 -9.46414 -8.93278 -8.51159 -7.02167 -5.83448 -3.12634 0.05608 0.43279 2.11087 2.74559 2.77404 2.92953 3.38725 3.43888 3.46713 3.49054 3.62900 4.19455 4.38193 4.45113 4.50644 4.54061 4.88257 5.00238 5.07078 5.10430 5.34323 5.40399 5.42815 5.45007 5.57715 5.67706 5.81308 5.85328 5.91786 6.08744 6.16179 6.26389 6.30969 6.34721 6.41828 6.50757 6.67321 6.81655 7.03502 7.12750 7.36525 7.63312 7.81877 8.01415 8.34716 9.46088 10.03777 10.37983 11.38897 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.015806 B = 0.003209 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.041531 B = 8722.318426 C =10333.444487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.565 5.565 3 C 0.566 3.434 4 O -0.535 6.535 5 C 0.087 3.913 6 C -0.087 4.087 7 C -0.085 4.085 8 C -0.091 4.091 9 C 0.065 3.935 10 C 0.581 3.419 11 N -0.834 5.834 12 O -0.536 6.536 13 N -0.424 5.424 14 C 0.112 3.888 15 C -0.174 4.174 16 C 0.162 3.838 17 N -0.712 5.712 18 C -0.245 4.245 19 H 0.072 0.928 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.161 4.161 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.412 0.588 34 H 0.408 0.592 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.062 0.938 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.308 23.102 4.040 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.295 5.295 3 C 0.352 3.648 4 O -0.411 6.411 5 C -0.054 4.054 6 C -0.108 4.108 7 C -0.111 4.111 8 C -0.111 4.111 9 C -0.075 4.075 10 C 0.364 3.636 11 N -0.398 5.398 12 O -0.412 6.412 13 N -0.139 5.139 14 C 0.008 3.992 15 C -0.216 4.216 16 C 0.049 3.951 17 N -0.349 5.349 18 C -0.376 4.376 19 H 0.090 0.910 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.201 4.201 27 H 0.100 0.900 28 H 0.120 0.880 29 H 0.077 0.923 30 H 0.173 0.827 31 H 0.170 0.830 32 H 0.171 0.829 33 H 0.243 0.757 34 H 0.240 0.760 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.220 0.780 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.023 22.924 3.963 23.264 hybrid contribution -0.371 -0.448 -0.019 0.581 sum -0.348 22.477 3.944 22.823 Atomic orbital electron populations 1.22745 0.78813 1.04393 1.02948 1.47382 1.07651 1.04835 1.69611 1.17792 0.86488 0.82696 0.77779 1.90787 1.12830 1.86614 1.50908 1.21250 0.89151 0.94686 1.00306 1.22369 1.02812 0.91485 0.94155 1.21698 0.93628 0.99009 0.96731 1.22330 0.95169 0.99102 0.94545 1.21242 0.94420 0.89956 1.01874 1.17782 0.85910 0.83987 0.75950 1.43743 1.11709 1.09218 1.75089 1.90842 1.66259 1.33688 1.50419 1.68033 1.07883 1.28385 1.09622 1.22008 0.96395 0.81674 0.99122 1.24308 1.00424 0.96305 1.00551 1.21882 0.94879 0.86654 0.91643 1.42433 1.08196 1.02379 1.81938 1.19319 0.86719 0.91540 1.40043 0.91045 1.24774 0.97214 0.96575 1.02260 1.69665 1.27473 1.06886 1.53818 0.86131 0.83437 0.79440 0.77233 1.20506 1.21840 1.21840 1.23876 1.01137 0.98674 0.96442 0.89964 0.87991 0.92327 0.82663 0.83040 0.82873 0.75709 0.76013 0.88179 0.89049 0.91985 0.90080 0.78047 0.93447 0.91960 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.61 7.27 59.85 0.44 1.04 16 2 N -0.57 -7.65 3.08 -173.98 -0.54 -8.19 16 3 C 0.57 7.82 7.66 -12.16 -0.09 7.72 16 4 O -0.53 -8.68 15.89 5.36 0.09 -8.59 16 5 C 0.09 0.96 6.64 -83.02 -0.55 0.41 16 6 C -0.09 -0.76 9.63 -38.95 -0.38 -1.14 16 7 C -0.08 -0.55 10.16 -39.34 -0.40 -0.95 16 8 C -0.09 -0.71 9.63 -38.95 -0.38 -1.08 16 9 C 0.06 0.62 6.75 -83.03 -0.56 0.06 16 10 C 0.58 5.86 8.09 -12.15 -0.10 5.76 16 11 N -0.83 -6.30 8.86 30.62 0.27 -6.03 16 12 O -0.54 -6.84 17.16 5.36 0.09 -6.75 16 13 N -0.42 -4.29 5.26 -6.38 -0.03 -4.33 16 14 C 0.11 1.68 4.38 -67.12 -0.29 1.39 16 15 C -0.17 -2.83 7.09 -25.83 -0.18 -3.01 16 16 C 0.16 2.99 3.82 -67.03 -0.26 2.73 16 17 N -0.71 -17.07 5.41 -52.55 -0.28 -17.36 16 18 C -0.25 -6.51 9.97 -15.06 -0.15 -6.66 16 19 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 22 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 C -0.16 -2.66 7.57 -25.92 -0.20 -2.85 16 27 H 0.08 0.99 4.64 -51.93 -0.24 0.74 16 28 H 0.10 1.02 4.35 -54.48 -0.24 0.79 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.16 1.23 7.65 -52.48 -0.40 0.83 16 31 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 32 H 0.15 1.02 7.64 -52.49 -0.40 0.62 16 33 H 0.41 2.84 6.78 -40.82 -0.28 2.57 16 34 H 0.41 2.43 8.93 -40.82 -0.36 2.06 16 35 H 0.10 1.55 7.36 -51.93 -0.38 1.17 16 36 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 37 H 0.06 0.95 7.08 -51.93 -0.37 0.58 16 38 H 0.08 1.44 5.72 -51.93 -0.30 1.14 16 39 H 0.39 9.93 7.92 -40.82 -0.32 9.60 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.09 1.50 8.12 -51.93 -0.42 1.08 16 LS Contribution 348.56 15.07 5.25 5.25 Total: -1.00 -33.21 348.56 -7.59 -40.80 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -4.95 Total: 12.28 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -3.19 Total: 3.00 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.14 Total: -62.64 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.18 Total: -15.34 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.21 -7.59 -40.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999908930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.875 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds