Wall clock time and date at job start Fri Apr 10 2020 18:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34773 * 120.00034 * 2 1 4 4 O 1.21509 * 119.99649 * 183.62761 * 3 2 1 5 5 C 1.48223 * 120.00178 * 3.63057 * 3 2 1 6 6 C 1.39633 * 119.65165 * 173.14918 * 5 3 2 7 7 C 1.38538 * 119.24364 * 179.72779 * 6 5 3 8 8 C 1.38590 * 118.55524 * 0.53800 * 7 6 5 9 9 C 1.39585 * 119.24307 * 359.72547 * 8 7 6 10 10 C 1.48224 * 119.65169 * 179.97438 * 9 8 7 11 11 N 1.34785 * 120.00186 * 180.02562 * 10 9 8 12 12 O 1.21511 * 120.00248 * 0.02593 * 10 9 8 13 13 N 1.32340 * 119.65361 * 353.42539 * 5 3 2 14 14 C 1.46501 * 119.99416 * 180.02562 * 2 1 3 15 15 C 1.53775 * 113.61567 * 328.31663 * 14 2 1 16 16 C 1.53951 * 87.02303 * 89.23058 * 15 14 2 17 17 N 1.46498 * 113.74495 * 139.94203 * 16 15 14 18 18 C 1.36939 * 120.00154 * 107.40017 * 17 16 15 19 19 H 1.08003 * 119.99564 * 0.02562 * 18 17 16 20 20 C 1.38816 * 120.00287 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99824 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00063 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47048 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47120 * 119.99773 * 22 20 18 25 25 H 1.48498 * 109.46897 * 240.00172 * 22 20 18 26 26 C 1.53777 * 87.11111 * 25.36194 * 16 15 14 27 27 H 1.08997 * 109.47289 * 203.97590 * 1 2 3 28 28 H 1.09000 * 109.46477 * 323.97515 * 1 2 3 29 29 H 1.08994 * 109.47132 * 83.97400 * 1 2 3 30 30 H 1.08005 * 120.37378 * 0.02562 * 6 5 3 31 31 H 1.07997 * 120.72367 * 180.24258 * 7 6 5 32 32 H 1.07994 * 120.37640 * 179.74975 * 8 7 6 33 33 H 0.96999 * 119.99760 * 359.97438 * 11 10 9 34 34 H 0.96998 * 119.99938 * 180.02562 * 11 10 9 35 35 H 1.08996 * 112.84740 * 197.11440 * 14 2 1 36 36 H 1.09004 * 113.61471 * 203.75006 * 15 14 2 37 37 H 1.08998 * 113.61509 * 334.65015 * 15 14 2 38 38 H 1.08998 * 113.53929 * 270.80915 * 16 15 14 39 39 H 0.97004 * 120.00351 * 287.40129 * 17 16 15 40 40 H 0.96997 * 120.00339 * 180.02562 * 21 20 18 41 41 H 1.08999 * 113.61611 * 220.09162 * 26 16 15 42 42 H 1.08998 * 113.61478 * 89.18781 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3522 1.1681 -0.0666 5 6 1.4001 2.4495 0.0813 6 6 2.1061 3.6456 0.2255 7 6 1.4073 4.8398 0.2949 8 6 0.0234 4.8024 0.2295 9 6 -0.6196 3.5713 0.0908 10 6 -2.0993 3.5206 0.0205 11 7 -2.7276 2.3356 -0.1128 12 8 -2.7461 4.5474 0.0832 13 7 0.0780 2.4484 0.0219 14 6 2.1974 -1.2688 -0.0006 15 6 1.4670 -2.4020 0.7389 16 6 0.7901 -2.7333 -0.6035 17 7 0.6638 -4.1698 -0.8619 18 6 -0.5622 -4.7745 -0.7829 19 1 -1.4362 -4.1923 -0.5305 20 6 -0.6818 -6.1358 -1.0272 21 7 0.3833 -6.8453 -1.3342 22 14 -2.3545 -6.9605 -0.9201 23 1 -3.3822 -5.9507 -0.5604 24 1 -2.6929 -7.5657 -2.2332 25 1 -2.3180 -8.0208 0.1190 26 6 2.0075 -2.0891 -1.2874 27 1 -0.3634 -0.9390 0.4176 28 1 -0.3632 0.8312 0.6044 29 1 -0.3633 0.1079 -1.0219 30 1 3.1848 3.6401 0.2774 31 1 1.9293 5.7791 0.4024 32 1 -0.5508 5.7153 0.2848 33 1 -2.2113 1.5160 -0.1632 34 1 -3.6959 2.3026 -0.1592 35 1 3.2404 -1.1556 0.2951 36 1 2.1312 -3.1879 1.0987 37 1 0.7742 -2.0494 1.5030 38 1 -0.1407 -2.1904 -0.7674 39 1 1.4487 -4.6927 -1.0889 40 1 0.2998 -7.7964 -1.5052 41 1 1.7505 -1.4842 -2.1569 42 1 2.8198 -2.7892 -1.4827 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999908930.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:43 Heat of formation + Delta-G solvation = 3.386710 kcal Electronic energy + Delta-G solvation = -26387.367861 eV Core-core repulsion = 22561.628746 eV Total energy + Delta-G solvation = -3825.739116 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.24089 -41.14425 -39.98652 -39.07060 -36.20689 -35.13881 -34.71617 -33.42010 -32.62120 -31.77784 -28.36334 -26.88867 -26.43843 -25.96973 -25.61343 -23.52176 -22.44419 -21.50101 -20.14186 -19.07227 -18.99155 -18.67923 -17.97044 -17.45140 -17.08450 -16.85604 -16.72302 -16.30021 -16.07583 -15.93355 -15.51285 -15.34054 -15.01409 -14.62203 -14.55437 -14.05284 -14.01011 -13.55349 -13.43262 -13.18297 -13.13941 -12.83713 -12.80707 -12.57389 -12.06686 -11.91779 -11.80896 -11.73002 -11.27041 -11.12483 -11.07685 -10.86064 -10.79595 -10.42845 -10.34086 -9.63354 -8.97660 -7.92217 -5.20773 -0.64966 -0.24721 1.33708 1.50534 1.50617 1.60498 1.75865 1.84488 2.22821 2.58770 2.73127 2.84386 3.39023 3.40145 3.70234 3.76670 3.80749 3.85903 3.90434 3.95114 4.21299 4.28547 4.33256 4.35792 4.40018 4.71910 4.79188 4.86867 4.89975 4.93351 4.97418 5.06574 5.12422 5.13992 5.31213 5.39317 5.54844 5.69000 5.75251 6.10082 6.29046 6.30834 6.42269 6.95920 7.14207 7.35789 8.11848 8.34627 9.31499 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.015806 B = 0.003209 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.041531 B = 8722.318426 C =10333.444487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.569 5.569 3 C 0.565 3.435 4 O -0.565 6.565 5 C 0.065 3.935 6 C -0.086 4.086 7 C -0.066 4.066 8 C -0.085 4.085 9 C 0.051 3.949 10 C 0.580 3.420 11 N -0.821 5.821 12 O -0.568 6.568 13 N -0.426 5.426 14 C 0.127 3.873 15 C -0.161 4.161 16 C 0.150 3.850 17 N -0.727 5.727 18 C -0.238 4.238 19 H 0.084 0.916 20 C -0.078 4.078 21 N -0.972 5.972 22 Si 0.970 3.030 23 H -0.260 1.260 24 H -0.297 1.297 25 H -0.297 1.297 26 C -0.155 4.155 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.064 0.936 30 H 0.162 0.838 31 H 0.192 0.808 32 H 0.167 0.833 33 H 0.416 0.584 34 H 0.416 0.584 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.372 0.628 40 H 0.249 0.751 41 H 0.064 0.936 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 25.644 4.642 26.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.298 5.298 3 C 0.352 3.648 4 O -0.444 6.444 5 C -0.075 4.075 6 C -0.106 4.106 7 C -0.091 4.091 8 C -0.105 4.105 9 C -0.089 4.089 10 C 0.363 3.637 11 N -0.385 5.385 12 O -0.446 6.446 13 N -0.142 5.142 14 C 0.023 3.977 15 C -0.202 4.202 16 C 0.041 3.959 17 N -0.364 5.364 18 C -0.370 4.370 19 H 0.101 0.899 20 C -0.270 4.270 21 N -0.623 5.623 22 Si 0.800 3.200 23 H -0.184 1.184 24 H -0.225 1.225 25 H -0.225 1.225 26 C -0.195 4.195 27 H 0.095 0.905 28 H 0.136 0.864 29 H 0.082 0.918 30 H 0.180 0.820 31 H 0.210 0.790 32 H 0.185 0.815 33 H 0.248 0.752 34 H 0.249 0.751 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.204 0.796 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.927 25.508 4.581 25.932 hybrid contribution -0.064 -1.091 -0.202 1.111 sum -0.992 24.417 4.378 24.826 Atomic orbital electron populations 1.22851 0.77485 1.04734 1.03635 1.47443 1.08408 1.04267 1.69653 1.18202 0.86323 0.83475 0.76765 1.90762 1.14180 1.87194 1.52275 1.20943 0.89561 0.94057 1.02918 1.22544 1.03269 0.91390 0.93424 1.22089 0.92954 0.99683 0.94371 1.22604 0.95923 0.98907 0.93116 1.21295 0.94142 0.90574 1.02882 1.17900 0.86169 0.84038 0.75599 1.43691 1.12296 1.08768 1.73757 1.90827 1.66857 1.34702 1.52238 1.67816 1.07556 1.28956 1.09840 1.21724 0.96396 0.82162 0.97453 1.24059 1.00167 0.96423 0.99589 1.22220 0.96315 0.84054 0.93333 1.42644 1.06999 1.04419 1.82368 1.19768 0.87912 0.91744 1.37598 0.89859 1.25570 1.00463 0.97535 1.03442 1.69824 1.29551 1.06673 1.56216 0.85111 0.80040 0.78430 0.76431 1.18426 1.22498 1.22494 1.23763 0.99880 0.98608 0.97212 0.90507 0.86443 0.91766 0.82014 0.79046 0.81516 0.75204 0.75089 0.88490 0.90179 0.90697 0.88946 0.79584 0.94176 0.91687 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.15 7.27 127.77 0.93 2.08 16 2 N -0.57 -14.74 3.08 -822.64 -2.53 -17.27 16 3 C 0.56 14.99 7.66 86.90 0.67 15.65 16 4 O -0.57 -18.01 15.89 -3.75 -0.06 -18.07 16 5 C 0.07 1.33 6.64 42.06 0.28 1.61 16 6 C -0.09 -1.27 9.63 22.68 0.22 -1.05 16 7 C -0.07 -0.61 10.16 22.43 0.23 -0.38 16 8 C -0.08 -1.07 9.63 22.68 0.22 -0.85 16 9 C 0.05 0.87 6.75 42.04 0.28 1.16 16 10 C 0.58 10.75 8.09 86.90 0.70 11.45 16 11 N -0.82 -11.06 8.86 -175.33 -1.55 -12.61 16 12 O -0.57 -13.72 17.16 -3.75 -0.06 -13.78 16 13 N -0.43 -7.83 5.26 -174.09 -0.92 -8.74 16 14 C 0.13 3.74 4.38 45.52 0.20 3.94 16 15 C -0.16 -5.12 7.09 31.18 0.22 -4.90 16 16 C 0.15 5.48 3.82 45.57 0.17 5.65 16 17 N -0.73 -35.08 5.41 -320.18 -1.73 -36.81 16 18 C -0.24 -12.58 9.97 84.03 0.84 -11.74 16 19 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 20 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 21 N -0.97 -58.61 13.06 21.65 0.28 -58.33 16 22 Si 0.97 44.69 29.55 68.60 2.03 46.72 16 23 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 26 C -0.15 -5.05 7.57 31.12 0.24 -4.82 16 27 H 0.08 1.70 4.64 -2.39 -0.01 1.69 16 28 H 0.12 2.14 4.35 -7.43 -0.03 2.10 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.16 2.18 7.65 -2.91 -0.02 2.16 16 31 H 0.19 0.23 8.06 -2.91 -0.02 0.21 16 32 H 0.17 1.69 7.64 -2.91 -0.02 1.66 16 33 H 0.42 4.98 6.78 -92.71 -0.63 4.36 16 34 H 0.42 4.30 8.93 -92.71 -0.83 3.47 16 35 H 0.10 2.98 7.36 -2.39 -0.02 2.96 16 36 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 37 H 0.07 2.18 7.08 -2.39 -0.02 2.17 16 38 H 0.09 3.15 5.72 -2.39 -0.01 3.14 16 39 H 0.37 19.65 7.92 -92.71 -0.73 18.92 16 40 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 42 H 0.08 2.80 8.12 -2.39 -0.02 2.79 16 Total: -1.00 -71.94 348.56 0.01 -71.93 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: -1.10 Total: 33.05 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 5.66 Total: 13.92 kcal Atomic # 7 Polarization: -127.31 SS G_CDS: -6.45 Total: -133.76 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.12 Total: -31.85 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -71.94 0.01 -71.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999908930.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.316 kcal (2) G-P(sol) polarization free energy of solvation -71.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds