Wall clock time and date at job start Fri Apr 10 2020 18:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34771 * 120.00121 * 2 1 4 4 O 1.21494 * 120.00201 * 177.23828 * 3 2 1 5 5 C 1.48336 * 120.00075 * 357.23790 * 3 2 1 6 6 C 1.39304 * 119.57253 * 186.88254 * 5 3 2 7 7 C 1.38453 * 119.18733 * 179.79430 * 6 5 3 8 8 C 1.39864 * 118.36144 * 0.46821 * 7 6 5 9 9 C 1.48005 * 120.46333 * 179.77491 * 8 7 6 10 10 N 1.34773 * 119.99769 * 179.97438 * 9 8 7 11 11 O 1.21532 * 120.00033 * 359.97438 * 9 8 7 12 12 C 1.39734 * 119.07356 * 359.74851 * 8 7 6 13 13 N 1.31415 * 120.71368 * 0.02562 * 12 8 7 14 14 C 1.46496 * 119.99779 * 180.02562 * 2 1 3 15 15 C 1.53785 * 113.61508 * 59.99960 * 14 2 1 16 16 C 1.53791 * 87.08008 * 219.93213 * 15 14 2 17 17 N 1.46490 * 113.61562 * 270.79892 * 16 15 14 18 18 C 1.36941 * 120.00320 * 203.47333 * 17 16 15 19 19 H 1.08003 * 119.99189 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00271 * 180.02562 * 18 17 16 21 21 N 1.31614 * 119.99806 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99923 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47371 * 59.99731 * 22 20 18 24 24 H 1.48500 * 109.47462 * 179.97438 * 22 20 18 25 25 H 1.48508 * 109.47130 * 300.00047 * 22 20 18 26 26 C 1.53782 * 87.16992 * 25.39184 * 16 15 14 27 27 H 1.08998 * 109.47240 * 276.10225 * 1 2 3 28 28 H 1.09001 * 109.47330 * 36.10301 * 1 2 3 29 29 H 1.08998 * 109.47471 * 156.10407 * 1 2 3 30 30 H 1.07999 * 120.40420 * 359.97438 * 6 5 3 31 31 H 1.08006 * 120.81807 * 180.22215 * 7 6 5 32 32 H 0.96998 * 120.00471 * 359.97438 * 10 9 8 33 33 H 0.96999 * 120.00309 * 179.97438 * 10 9 8 34 34 H 1.07997 * 119.64309 * 179.97438 * 12 8 7 35 35 H 1.09001 * 112.85088 * 191.19711 * 14 2 1 36 36 H 1.08998 * 113.61213 * 105.38607 * 15 14 2 37 37 H 1.08999 * 113.61230 * 334.47804 * 15 14 2 38 38 H 1.08997 * 113.60895 * 139.97828 * 16 15 14 39 39 H 0.97005 * 120.00229 * 23.47377 * 17 16 15 40 40 H 0.97004 * 119.99635 * 179.97438 * 21 20 18 41 41 H 1.08993 * 113.61840 * 89.16036 * 26 16 15 42 42 H 1.09008 * 113.61041 * 220.05990 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3527 1.1678 0.0507 5 6 1.3985 2.4510 -0.0619 6 6 2.1025 3.6443 -0.2066 7 6 1.4032 4.8377 -0.2678 8 6 0.0086 4.7962 -0.1711 9 6 -0.7849 6.0444 -0.2260 10 7 -2.1284 5.9935 -0.1324 11 8 -0.2249 7.1152 -0.3554 12 6 -0.6253 3.5598 -0.0226 13 7 0.0744 2.4485 0.0267 14 6 2.1974 -1.2687 -0.0006 15 6 1.8952 -2.1539 -1.2212 16 6 1.9150 -3.3527 -0.2581 17 7 3.2422 -3.9503 -0.0921 18 6 3.3608 -5.2528 0.3138 19 1 2.4758 -5.8393 0.5118 20 6 4.6184 -5.8188 0.4716 21 7 5.6968 -5.1038 0.2307 22 14 4.7802 -7.5953 1.0259 23 1 4.1076 -8.4835 0.0440 24 1 6.2176 -7.9568 1.1162 25 1 4.1437 -7.7582 2.3577 26 6 1.5404 -2.3642 0.8587 27 1 -0.3633 0.1092 1.0218 28 1 -0.3634 0.8303 -0.6055 29 1 -0.3634 -0.9395 -0.4163 30 1 3.1805 3.6384 -0.2732 31 1 1.9222 5.7778 -0.3833 32 1 -2.5754 5.1388 -0.0295 33 1 -2.6484 6.8115 -0.1680 34 1 -1.7017 3.5171 0.0534 35 1 3.2624 -1.1428 0.1945 36 1 2.6990 -2.1719 -1.9572 37 1 0.9175 -1.9666 -1.6651 38 1 1.1409 -4.0917 -0.4649 39 1 4.0371 -3.4233 -0.2696 40 1 6.5757 -5.4993 0.3413 41 1 0.4655 -2.2345 0.9846 42 1 2.0581 -2.5517 1.7995 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999912807.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:47 Heat of formation + Delta-G solvation = 24.280972 kcal Electronic energy + Delta-G solvation = -25678.121576 eV Core-core repulsion = 21853.288504 eV Total energy + Delta-G solvation = -3824.833073 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.34729 -40.07185 -39.09889 -37.87499 -34.98106 -34.47691 -33.30470 -32.65535 -31.71319 -29.75982 -27.00344 -26.28389 -25.10903 -24.21722 -24.10703 -22.89867 -21.53128 -20.31472 -18.75195 -18.22402 -18.00766 -17.36381 -17.20423 -16.71942 -15.89380 -15.78837 -15.54319 -15.24970 -14.96710 -14.77861 -14.16278 -13.94441 -13.88687 -13.81974 -13.20391 -13.03347 -12.92318 -12.65060 -12.07022 -12.01048 -11.86936 -11.49590 -10.88704 -10.85426 -10.77229 -10.47283 -10.32986 -10.32441 -10.20846 -10.18509 -9.75331 -9.71426 -9.67933 -9.40260 -8.90153 -8.38782 -7.00824 -5.78504 -3.08867 -0.17743 0.68417 2.05473 2.77787 2.81820 2.93041 3.43594 3.47173 3.47820 3.49314 3.62184 4.16291 4.18968 4.36495 4.46936 4.56414 4.67006 5.11508 5.12742 5.19261 5.36313 5.41777 5.44265 5.45864 5.47002 5.73754 5.85954 5.87214 5.98617 6.10225 6.12893 6.16873 6.24036 6.43435 6.56529 6.66993 6.70706 6.78561 7.00059 7.14120 7.48612 7.61623 7.69034 8.11716 8.39561 9.50153 10.06658 10.40707 11.43478 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.040322 B = 0.002235 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.245774 B =12525.194438 C =13017.136050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.577 5.577 3 C 0.557 3.443 4 O -0.527 6.527 5 C 0.114 3.886 6 C -0.118 4.118 7 C -0.018 4.018 8 C -0.179 4.179 9 C 0.570 3.430 10 N -0.848 5.848 11 O -0.534 6.534 12 C 0.126 3.874 13 N -0.451 5.451 14 C 0.120 3.880 15 C -0.166 4.166 16 C 0.173 3.827 17 N -0.706 5.706 18 C -0.246 4.246 19 H 0.072 0.928 20 C -0.011 4.011 21 N -0.930 5.930 22 Si 0.910 3.090 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.180 4.180 27 H 0.055 0.945 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.159 0.841 31 H 0.156 0.844 32 H 0.402 0.598 33 H 0.408 0.592 34 H 0.165 0.835 35 H 0.119 0.881 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.073 0.927 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.857 21.158 -1.588 28.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.306 5.306 3 C 0.342 3.658 4 O -0.403 6.403 5 C -0.023 4.023 6 C -0.139 4.139 7 C -0.045 4.045 8 C -0.185 4.185 9 C 0.355 3.645 10 N -0.412 5.412 11 O -0.411 6.411 12 C -0.034 4.034 13 N -0.163 5.163 14 C 0.018 3.982 15 C -0.206 4.206 16 C 0.060 3.940 17 N -0.344 5.344 18 C -0.377 4.377 19 H 0.090 0.910 20 C -0.208 4.208 21 N -0.577 5.577 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.222 4.222 27 H 0.073 0.927 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.176 0.824 31 H 0.173 0.827 32 H 0.232 0.768 33 H 0.240 0.760 34 H 0.182 0.818 35 H 0.137 0.863 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.221 0.779 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.053 20.697 -1.497 27.505 hybrid contribution 0.177 -0.019 0.299 0.348 sum -17.876 20.679 -1.197 27.360 Atomic orbital electron populations 1.22350 0.78642 1.03317 1.02685 1.47877 1.07781 1.05476 1.69510 1.17956 0.86684 0.82966 0.78199 1.90825 1.12743 1.86537 1.50234 1.21629 0.89839 0.94777 0.96096 1.22206 1.03020 0.91050 0.97592 1.21795 0.92441 0.99370 0.90855 1.21082 0.95518 0.94754 1.07128 1.18065 0.82470 0.88308 0.75696 1.43722 1.07068 1.13437 1.76981 1.90847 1.70917 1.30408 1.48884 1.23094 1.00418 0.86744 0.93144 1.68207 1.07066 1.28948 1.12071 1.22929 0.97847 0.79381 0.98072 1.23946 1.01578 0.97569 0.97526 1.20900 0.89907 0.91279 0.91962 1.42210 1.00993 1.11520 1.79705 1.19216 0.92326 0.88033 1.38130 0.90983 1.24791 0.95422 0.98383 1.02185 1.69660 0.97143 1.36078 1.54820 0.86236 0.76624 0.84588 0.78507 1.21200 1.21682 1.21204 1.24338 0.99516 0.97361 1.00975 0.92688 0.87870 0.91689 0.82354 0.82683 0.76794 0.75999 0.81815 0.86290 0.91007 0.90316 0.91423 0.77924 0.93304 0.90825 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 8.07 59.85 0.48 1.27 16 2 N -0.58 -8.34 3.08 -173.83 -0.54 -8.88 16 3 C 0.56 8.49 7.66 -12.11 -0.09 8.40 16 4 O -0.53 -9.85 15.81 5.37 0.08 -9.77 16 5 C 0.11 1.33 6.63 -82.94 -0.55 0.78 16 6 C -0.12 -1.19 9.62 -39.11 -0.38 -1.57 16 7 C -0.02 -0.16 9.71 -38.89 -0.38 -0.53 16 8 C -0.18 -1.34 5.90 -104.73 -0.62 -1.96 16 9 C 0.57 4.28 8.06 -12.26 -0.10 4.18 16 10 N -0.85 -2.68 8.83 30.57 0.27 -2.41 16 11 O -0.53 -6.17 17.25 5.34 0.09 -6.07 16 12 C 0.13 0.81 10.71 -17.17 -0.18 0.62 16 13 N -0.45 -4.19 5.99 -9.48 -0.06 -4.25 16 14 C 0.12 2.04 4.10 -67.03 -0.27 1.76 16 15 C -0.17 -2.76 7.34 -25.91 -0.19 -2.95 16 16 C 0.17 3.36 4.55 -67.12 -0.31 3.05 16 17 N -0.71 -17.63 5.31 -52.64 -0.28 -17.91 16 18 C -0.25 -6.77 9.97 -15.06 -0.15 -6.92 16 19 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 22 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 C -0.18 -3.08 7.29 -25.83 -0.19 -3.26 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.10 0.99 5.19 -52.73 -0.27 0.72 16 29 H 0.06 0.66 6.12 -51.93 -0.32 0.34 16 30 H 0.16 1.57 7.65 -52.49 -0.40 1.17 16 31 H 0.16 1.17 7.73 -52.48 -0.41 0.76 16 32 H 0.40 0.10 6.89 -40.82 -0.28 -0.18 16 33 H 0.41 0.85 8.93 -40.82 -0.36 0.49 16 34 H 0.16 0.34 6.41 -52.49 -0.34 0.01 16 35 H 0.12 2.41 7.22 -51.93 -0.37 2.04 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.08 1.10 7.01 -51.93 -0.36 0.73 16 38 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 39 H 0.39 10.39 7.90 -40.82 -0.32 10.07 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 41 H 0.07 1.06 6.60 -51.93 -0.34 0.71 16 42 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 LS Contribution 351.64 15.07 5.30 5.30 Total: -1.00 -35.55 351.64 -7.46 -43.01 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.02 Total: 8.73 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -3.02 Total: 2.45 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: 0.12 Total: -60.91 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.18 Total: -15.84 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.55 -7.46 -43.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999912807.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.293 kcal (2) G-P(sol) polarization free energy of solvation -35.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds