Wall clock time and date at job start Fri Apr 10 2020 18:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34771 * 120.00121 * 2 1 4 4 O 1.21494 * 120.00201 * 177.23828 * 3 2 1 5 5 C 1.48336 * 120.00075 * 357.23790 * 3 2 1 6 6 C 1.39304 * 119.57253 * 186.88254 * 5 3 2 7 7 C 1.38453 * 119.18733 * 179.79430 * 6 5 3 8 8 C 1.39864 * 118.36144 * 0.46821 * 7 6 5 9 9 C 1.48005 * 120.46333 * 179.77491 * 8 7 6 10 10 N 1.34773 * 119.99769 * 179.97438 * 9 8 7 11 11 O 1.21532 * 120.00033 * 359.97438 * 9 8 7 12 12 C 1.39734 * 119.07356 * 359.74851 * 8 7 6 13 13 N 1.31415 * 120.71368 * 0.02562 * 12 8 7 14 14 C 1.46496 * 119.99779 * 180.02562 * 2 1 3 15 15 C 1.53785 * 113.61508 * 59.99960 * 14 2 1 16 16 C 1.53791 * 87.08008 * 219.93213 * 15 14 2 17 17 N 1.46490 * 113.61562 * 270.79892 * 16 15 14 18 18 C 1.36941 * 120.00320 * 203.47333 * 17 16 15 19 19 H 1.08003 * 119.99189 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00271 * 180.02562 * 18 17 16 21 21 N 1.31614 * 119.99806 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99923 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47371 * 59.99731 * 22 20 18 24 24 H 1.48500 * 109.47462 * 179.97438 * 22 20 18 25 25 H 1.48508 * 109.47130 * 300.00047 * 22 20 18 26 26 C 1.53782 * 87.16992 * 25.39184 * 16 15 14 27 27 H 1.08998 * 109.47240 * 276.10225 * 1 2 3 28 28 H 1.09001 * 109.47330 * 36.10301 * 1 2 3 29 29 H 1.08998 * 109.47471 * 156.10407 * 1 2 3 30 30 H 1.07999 * 120.40420 * 359.97438 * 6 5 3 31 31 H 1.08006 * 120.81807 * 180.22215 * 7 6 5 32 32 H 0.96998 * 120.00471 * 359.97438 * 10 9 8 33 33 H 0.96999 * 120.00309 * 179.97438 * 10 9 8 34 34 H 1.07997 * 119.64309 * 179.97438 * 12 8 7 35 35 H 1.09001 * 112.85088 * 191.19711 * 14 2 1 36 36 H 1.08998 * 113.61213 * 105.38607 * 15 14 2 37 37 H 1.08999 * 113.61230 * 334.47804 * 15 14 2 38 38 H 1.08997 * 113.60895 * 139.97828 * 16 15 14 39 39 H 0.97005 * 120.00229 * 23.47377 * 17 16 15 40 40 H 0.97004 * 119.99635 * 179.97438 * 21 20 18 41 41 H 1.08993 * 113.61840 * 89.16036 * 26 16 15 42 42 H 1.09008 * 113.61041 * 220.05990 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3527 1.1678 0.0507 5 6 1.3985 2.4510 -0.0619 6 6 2.1025 3.6443 -0.2066 7 6 1.4032 4.8377 -0.2678 8 6 0.0086 4.7962 -0.1711 9 6 -0.7849 6.0444 -0.2260 10 7 -2.1284 5.9935 -0.1324 11 8 -0.2249 7.1152 -0.3554 12 6 -0.6253 3.5598 -0.0226 13 7 0.0744 2.4485 0.0267 14 6 2.1974 -1.2687 -0.0006 15 6 1.8952 -2.1539 -1.2212 16 6 1.9150 -3.3527 -0.2581 17 7 3.2422 -3.9503 -0.0921 18 6 3.3608 -5.2528 0.3138 19 1 2.4758 -5.8393 0.5118 20 6 4.6184 -5.8188 0.4716 21 7 5.6968 -5.1038 0.2307 22 14 4.7802 -7.5953 1.0259 23 1 4.1076 -8.4835 0.0440 24 1 6.2176 -7.9568 1.1162 25 1 4.1437 -7.7582 2.3577 26 6 1.5404 -2.3642 0.8587 27 1 -0.3633 0.1092 1.0218 28 1 -0.3634 0.8303 -0.6055 29 1 -0.3634 -0.9395 -0.4163 30 1 3.1805 3.6384 -0.2732 31 1 1.9222 5.7778 -0.3833 32 1 -2.5754 5.1388 -0.0295 33 1 -2.6484 6.8115 -0.1680 34 1 -1.7017 3.5171 0.0534 35 1 3.2624 -1.1428 0.1945 36 1 2.6990 -2.1719 -1.9572 37 1 0.9175 -1.9666 -1.6651 38 1 1.1409 -4.0917 -0.4649 39 1 4.0371 -3.4233 -0.2696 40 1 6.5757 -5.4993 0.3413 41 1 0.4655 -2.2345 0.9846 42 1 2.0581 -2.5517 1.7995 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999912807.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:46 Heat of formation + Delta-G solvation = -3.645942 kcal Electronic energy + Delta-G solvation = -25679.332578 eV Core-core repulsion = 21853.288504 eV Total energy + Delta-G solvation = -3826.044074 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.15878 -41.07364 -40.00441 -39.13307 -36.33689 -35.03858 -34.87541 -33.63944 -32.48277 -31.65390 -27.98563 -27.30924 -26.52657 -25.92017 -24.75743 -24.34054 -22.29101 -21.36430 -19.72091 -19.41999 -19.21979 -18.70242 -18.10161 -17.67775 -16.83888 -16.78777 -16.63286 -16.21662 -15.97429 -15.95659 -15.57836 -15.22457 -14.87151 -14.67612 -14.55273 -14.29834 -14.01378 -13.88745 -13.37110 -13.34166 -13.18879 -12.84859 -12.71101 -12.50456 -12.19983 -11.83293 -11.72407 -11.55159 -11.39961 -11.17676 -11.13163 -10.88884 -10.77966 -10.44101 -10.27091 -9.56375 -9.03887 -7.94524 -5.24955 -0.92838 0.03046 1.25754 1.47960 1.51692 1.57718 1.83018 1.94073 2.35649 2.56194 2.69957 2.87201 3.36973 3.47633 3.57292 3.64985 3.72204 3.84142 3.87038 3.89183 3.91930 4.26395 4.31134 4.43158 4.53795 4.74633 4.78493 4.82660 4.83992 4.92021 4.98599 5.10759 5.14904 5.24031 5.30355 5.45384 5.54116 5.69412 5.82208 6.25635 6.29584 6.33454 6.48178 6.98350 7.20794 7.31593 8.07445 8.29274 9.28789 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.040322 B = 0.002235 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.245774 B =12525.194438 C =13017.136050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.575 5.575 3 C 0.548 3.452 4 O -0.578 6.578 5 C 0.098 3.902 6 C -0.124 4.124 7 C -0.019 4.019 8 C -0.172 4.172 9 C 0.571 3.429 10 N -0.821 5.821 11 O -0.580 6.580 12 C 0.142 3.858 13 N -0.452 5.452 14 C 0.122 3.878 15 C -0.146 4.146 16 C 0.155 3.845 17 N -0.724 5.724 18 C -0.243 4.243 19 H 0.085 0.915 20 C -0.081 4.081 21 N -0.973 5.973 22 Si 0.978 3.022 23 H -0.274 1.274 24 H -0.300 1.300 25 H -0.276 1.276 26 C -0.159 4.159 27 H 0.065 0.935 28 H 0.120 0.880 29 H 0.079 0.921 30 H 0.148 0.852 31 H 0.161 0.839 32 H 0.420 0.580 33 H 0.418 0.582 34 H 0.216 0.784 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.118 0.882 38 H 0.081 0.919 39 H 0.370 0.630 40 H 0.250 0.750 41 H 0.114 0.886 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.467 21.662 -1.575 31.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.304 5.304 3 C 0.335 3.665 4 O -0.458 6.458 5 C -0.039 4.039 6 C -0.145 4.145 7 C -0.046 4.046 8 C -0.177 4.177 9 C 0.355 3.645 10 N -0.386 5.386 11 O -0.461 6.461 12 C -0.019 4.019 13 N -0.163 5.163 14 C 0.018 3.982 15 C -0.185 4.185 16 C 0.044 3.956 17 N -0.362 5.362 18 C -0.374 4.374 19 H 0.102 0.898 20 C -0.273 4.273 21 N -0.623 5.623 22 Si 0.807 3.193 23 H -0.200 1.200 24 H -0.226 1.226 25 H -0.202 1.202 26 C -0.200 4.200 27 H 0.084 0.916 28 H 0.138 0.862 29 H 0.097 0.903 30 H 0.166 0.834 31 H 0.178 0.822 32 H 0.253 0.747 33 H 0.251 0.749 34 H 0.232 0.768 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.136 0.864 38 H 0.099 0.901 39 H 0.202 0.798 40 H 0.059 0.941 41 H 0.132 0.868 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.811 21.185 -1.480 31.166 hybrid contribution 1.422 -0.025 0.290 1.451 sum -21.389 21.160 -1.190 30.111 Atomic orbital electron populations 1.22639 0.75852 1.04860 1.03891 1.47924 1.09270 1.04207 1.68989 1.18545 0.86415 0.84341 0.77161 1.90792 1.15100 1.87440 1.52482 1.21084 0.90947 0.93017 0.98814 1.22126 1.02770 0.91361 0.98240 1.21880 0.93343 0.98806 0.90527 1.21232 0.95046 0.95565 1.05905 1.18041 0.83594 0.87360 0.75498 1.43540 1.05531 1.14993 1.74547 1.90842 1.72045 1.31794 1.51377 1.23814 1.02267 0.85141 0.90629 1.68128 1.05655 1.30212 1.12330 1.22504 0.96089 0.81107 0.98454 1.23813 1.02906 0.95410 0.96395 1.21213 0.87702 0.92538 0.94129 1.42423 1.02681 1.10997 1.80071 1.19686 0.92610 0.89055 1.36063 0.89763 1.25674 0.95302 1.02692 1.03593 1.69847 0.97334 1.37879 1.57251 0.85142 0.75985 0.79740 0.78453 1.19980 1.22612 1.20243 1.24146 1.01466 0.95873 0.98562 0.91628 0.86203 0.90278 0.83382 0.82190 0.74701 0.74928 0.76758 0.90745 0.93032 0.86362 0.90105 0.79798 0.94098 0.86794 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 8.07 127.77 1.03 2.27 16 2 N -0.58 -16.16 3.08 -822.18 -2.54 -18.70 16 3 C 0.55 17.09 7.66 86.93 0.67 17.76 16 4 O -0.58 -23.23 15.81 -3.70 -0.06 -23.29 16 5 C 0.10 2.21 6.63 41.96 0.28 2.49 16 6 C -0.12 -2.54 9.62 22.58 0.22 -2.32 16 7 C -0.02 -0.31 9.71 22.71 0.22 -0.09 16 8 C -0.17 -2.10 5.90 -19.93 -0.12 -2.21 16 9 C 0.57 6.95 8.06 86.83 0.70 7.65 16 10 N -0.82 -1.81 8.83 -175.50 -1.55 -3.36 16 11 O -0.58 -12.57 17.25 -3.82 -0.07 -12.64 16 12 C 0.14 1.21 10.71 85.12 0.91 2.12 16 13 N -0.45 -7.00 5.99 -183.90 -1.10 -8.10 16 14 C 0.12 4.21 4.10 45.58 0.19 4.39 16 15 C -0.15 -4.70 7.34 31.13 0.23 -4.47 16 16 C 0.15 5.91 4.55 45.52 0.21 6.12 16 17 N -0.72 -37.12 5.31 -320.45 -1.70 -38.82 16 18 C -0.24 -13.47 9.97 84.03 0.84 -12.63 16 19 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 20 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 21 N -0.97 -61.33 13.06 21.65 0.28 -61.04 16 22 Si 0.98 46.47 29.55 68.60 2.03 48.50 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 26 C -0.16 -5.28 7.29 31.18 0.23 -5.05 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 28 H 0.12 1.82 5.19 -3.98 -0.02 1.80 16 29 H 0.08 1.22 6.12 -2.39 -0.01 1.20 16 30 H 0.15 3.24 7.65 -2.91 -0.02 3.22 16 31 H 0.16 2.38 7.73 -2.91 -0.02 2.36 16 32 H 0.42 -2.06 6.89 -92.71 -0.64 -2.70 16 33 H 0.42 0.18 8.93 -92.71 -0.83 -0.65 16 34 H 0.22 -0.50 6.41 -2.91 -0.02 -0.52 16 35 H 0.07 3.27 7.22 -2.39 -0.02 3.25 16 36 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.12 2.89 7.01 -2.39 -0.02 2.87 16 38 H 0.08 2.88 8.11 -2.39 -0.02 2.86 16 39 H 0.37 21.04 7.90 -92.70 -0.73 20.30 16 40 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.11 2.86 6.60 -2.39 -0.02 2.84 16 42 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -82.83 351.64 0.26 -82.57 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: -1.10 Total: 23.10 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 6.06 Total: 11.78 kcal Atomic # 7 Polarization: -123.42 SS G_CDS: -6.61 Total: -130.02 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.12 Total: -35.93 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -82.83 0.26 -82.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999912807.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.926 kcal (2) G-P(sol) polarization free energy of solvation -82.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds