Wall clock time and date at job start Fri Apr 10 2020 18:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34774 * 120.00167 * 2 1 4 4 O 1.21507 * 120.00191 * 182.09588 * 3 2 1 5 5 C 1.48167 * 120.00033 * 2.08916 * 3 2 1 6 6 C 1.39251 * 119.65932 * 172.80188 * 5 3 2 7 7 C 1.39755 * 118.90467 * 180.02562 * 6 5 3 8 8 C 1.48147 * 120.88676 * 180.25139 * 7 6 5 9 9 N 1.34779 * 119.99631 * 179.71705 * 8 7 6 10 10 O 1.21512 * 119.99961 * 359.72066 * 8 7 6 11 11 C 1.39807 * 118.22153 * 359.97438 * 7 6 5 12 12 C 1.38497 * 119.19260 * 359.97438 * 11 7 6 13 13 N 1.31469 * 121.03247 * 0.02742 * 12 11 7 14 14 C 1.46501 * 119.99731 * 180.02562 * 2 1 3 15 15 C 1.53776 * 113.61703 * 39.13233 * 14 2 1 16 16 C 1.53953 * 87.02137 * 220.04796 * 15 14 2 17 17 N 1.46496 * 113.74119 * 139.94276 * 16 15 14 18 18 C 1.36943 * 120.00103 * 107.40443 * 17 16 15 19 19 H 1.08003 * 119.99623 * 359.97438 * 18 17 16 20 20 C 1.38807 * 120.00211 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99873 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 120.00102 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46722 * 90.00352 * 22 20 18 24 24 H 1.48500 * 109.47015 * 210.00149 * 22 20 18 25 25 H 1.48501 * 109.47071 * 330.00351 * 22 20 18 26 26 C 1.53777 * 87.10951 * 25.36418 * 16 15 14 27 27 H 1.08994 * 109.46970 * 83.78443 * 1 2 3 28 28 H 1.08995 * 109.47152 * 203.78518 * 1 2 3 29 29 H 1.09007 * 109.46887 * 323.78552 * 1 2 3 30 30 H 1.07998 * 120.54594 * 359.97438 * 6 5 3 31 31 H 0.97000 * 119.99808 * 359.97438 * 9 8 7 32 32 H 0.96998 * 119.99781 * 180.02562 * 9 8 7 33 33 H 1.07999 * 120.40723 * 179.97438 * 11 7 6 34 34 H 1.07999 * 119.48383 * 180.02562 * 12 11 7 35 35 H 1.09001 * 112.84915 * 170.33679 * 14 2 1 36 36 H 1.09001 * 113.61304 * 334.57182 * 15 14 2 37 37 H 1.09007 * 113.61273 * 105.46988 * 15 14 2 38 38 H 1.08996 * 113.54077 * 270.81291 * 16 15 14 39 39 H 0.97004 * 120.00646 * 287.40340 * 17 16 15 40 40 H 0.96999 * 119.99706 * 179.97438 * 21 20 18 41 41 H 1.09002 * 113.61424 * 220.08721 * 26 16 15 42 42 H 1.09008 * 113.61718 * 89.18419 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3534 1.1675 -0.0385 5 6 1.3989 2.4499 0.0468 6 6 2.0989 3.6442 0.1982 7 6 1.3850 4.8449 0.2409 8 6 2.0855 6.1411 0.3950 9 7 1.3796 7.2887 0.4283 10 8 3.2965 6.1695 0.4913 11 6 -0.0075 4.7904 0.1283 12 6 -0.6256 3.5600 -0.0208 13 7 0.0763 2.4490 -0.0571 14 6 2.1975 -1.2688 -0.0006 15 6 1.5590 -2.3483 -0.8903 16 6 1.9074 -3.3558 0.2205 17 7 0.8613 -4.3526 0.4620 18 6 1.0449 -5.6489 0.0607 19 1 1.9609 -5.9364 -0.4343 20 6 0.0536 -6.5932 0.2890 21 7 0.2303 -7.8393 -0.0963 22 14 -1.5309 -6.0959 1.1445 23 1 -2.5252 -5.6611 0.1308 24 1 -2.0697 -7.2546 1.9011 25 1 -1.2574 -4.9768 2.0815 26 6 1.8674 -2.1711 1.2001 27 1 -0.3633 0.1113 -1.0216 28 1 -0.3633 -0.9403 0.4144 29 1 -0.3633 0.8292 0.6072 30 1 3.1756 3.6424 0.2820 31 1 0.4130 7.2660 0.3509 32 1 1.8383 8.1375 0.5288 33 1 -0.5941 5.6968 0.1572 34 1 -1.7010 3.5126 -0.1086 35 1 3.2667 -1.1402 -0.1691 36 1 0.4874 -2.2146 -1.0381 37 1 2.0976 -2.5208 -1.8222 38 1 2.8972 -3.7990 0.1114 39 1 0.0385 -4.0944 0.9062 40 1 -0.4623 -8.4993 0.0637 41 1 2.6546 -2.2008 1.9535 42 1 0.8802 -1.9889 1.6249 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999933998.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:54 Heat of formation + Delta-G solvation = 27.909309 kcal Electronic energy + Delta-G solvation = -25758.462043 eV Core-core repulsion = 21933.786307 eV Total energy + Delta-G solvation = -3824.675736 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.39901 -40.10744 -39.20601 -37.97494 -35.05727 -34.56601 -33.31671 -32.67665 -31.79392 -30.48998 -27.03009 -25.94570 -25.32231 -25.13223 -23.92685 -22.51975 -21.52467 -20.00881 -19.10909 -18.58945 -17.86754 -17.45696 -17.16373 -16.51440 -16.40127 -15.84262 -15.73510 -15.28278 -15.15346 -14.70257 -14.45827 -14.37302 -14.01312 -13.88402 -13.15271 -13.01373 -12.71426 -12.66029 -12.19141 -12.15276 -11.89961 -11.73241 -11.01055 -10.88185 -10.73512 -10.56497 -10.48222 -10.36375 -10.32947 -10.17405 -10.00649 -9.76721 -9.62787 -9.50209 -8.92520 -8.47599 -7.29409 -5.79437 -3.15445 -0.05858 0.34471 2.11514 2.64116 2.67868 2.92889 3.34972 3.37107 3.42903 3.43155 3.68627 3.97630 4.13310 4.28684 4.43140 4.56159 4.64414 5.03457 5.04069 5.09807 5.20768 5.25964 5.33421 5.40049 5.40337 5.65406 5.71664 5.76018 5.84955 6.06565 6.10353 6.13720 6.17309 6.22579 6.36773 6.49619 6.61064 6.68945 6.90868 7.15611 7.41028 7.56431 7.96811 8.04070 8.40068 9.17315 9.89684 10.09269 11.38677 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.030572 B = 0.002458 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.654635 B =11390.407315 C =12062.504307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.575 5.575 3 C 0.563 3.437 4 O -0.534 6.534 5 C 0.086 3.914 6 C -0.055 4.055 7 C -0.100 4.100 8 C 0.565 3.435 9 N -0.846 5.846 10 O -0.523 6.523 11 C -0.123 4.123 12 C 0.091 3.909 13 N -0.430 5.430 14 C 0.113 3.887 15 C -0.173 4.173 16 C 0.176 3.824 17 N -0.734 5.734 18 C -0.248 4.248 19 H 0.092 0.908 20 C 0.004 3.996 21 N -0.932 5.932 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.165 4.165 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.162 0.838 31 H 0.402 0.598 32 H 0.409 0.591 33 H 0.144 0.856 34 H 0.172 0.828 35 H 0.118 0.882 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.362 0.638 40 H 0.260 0.740 41 H 0.069 0.931 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.692 32.168 1.034 32.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.304 5.304 3 C 0.349 3.651 4 O -0.411 6.411 5 C -0.052 4.052 6 C -0.077 4.077 7 C -0.111 4.111 8 C 0.349 3.651 9 N -0.411 5.411 10 O -0.398 6.398 11 C -0.144 4.144 12 C -0.067 4.067 13 N -0.143 5.143 14 C 0.010 3.990 15 C -0.215 4.215 16 C 0.064 3.936 17 N -0.373 5.373 18 C -0.378 4.378 19 H 0.110 0.890 20 C -0.191 4.191 21 N -0.579 5.579 22 Si 0.715 3.285 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.205 4.205 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.180 0.820 31 H 0.232 0.768 32 H 0.241 0.759 33 H 0.161 0.839 34 H 0.189 0.811 35 H 0.136 0.864 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.572 30.895 0.879 31.113 hybrid contribution -1.403 1.478 0.635 2.134 sum -4.975 32.373 1.514 32.788 Atomic orbital electron populations 1.22358 0.78248 1.03440 1.02884 1.47761 1.07909 1.05167 1.69571 1.17824 0.86574 0.82894 0.77850 1.90799 1.12734 1.86666 1.50856 1.21319 0.89813 0.94288 0.99781 1.22256 1.03111 0.90054 0.92234 1.20272 0.93960 0.94075 1.02765 1.18093 0.86823 0.84014 0.76141 1.43685 1.11620 1.08781 1.77053 1.90882 1.13469 1.87145 1.48334 1.22527 0.93774 1.00465 0.97639 1.23006 1.01076 0.87000 0.95620 1.68115 1.06944 1.30228 1.08995 1.22724 0.97584 0.80075 0.98630 1.24320 1.01221 0.96251 0.99669 1.21347 0.93703 0.86696 0.91859 1.42701 1.17056 1.06974 1.70581 1.19147 1.03279 0.83520 1.31817 0.89017 1.24703 0.98207 0.95381 1.00859 1.69705 1.34550 1.01599 1.52077 0.86548 0.84835 0.77459 0.79683 1.21048 1.21713 1.20314 1.23957 1.01941 0.97104 0.97498 0.92392 0.91480 0.88005 0.82045 0.76842 0.75880 0.83875 0.81106 0.86399 0.89852 0.91564 0.89361 0.80494 0.93022 0.91273 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 8.02 59.85 0.48 1.34 16 2 N -0.57 -8.05 3.08 -174.00 -0.54 -8.58 16 3 C 0.56 8.23 7.66 -12.18 -0.09 8.14 16 4 O -0.53 -9.29 15.81 5.36 0.08 -9.21 16 5 C 0.09 1.00 6.62 -83.05 -0.55 0.45 16 6 C -0.06 -0.60 9.19 -38.64 -0.36 -0.95 16 7 C -0.10 -0.78 5.91 -104.67 -0.62 -1.40 16 8 C 0.56 4.59 8.07 -12.19 -0.10 4.49 16 9 N -0.85 -2.74 8.83 30.60 0.27 -2.47 16 10 O -0.52 -6.64 17.28 5.35 0.09 -6.55 16 11 C -0.12 -0.56 9.62 -38.90 -0.37 -0.93 16 12 C 0.09 0.52 11.17 -17.61 -0.20 0.32 16 13 N -0.43 -4.02 6.01 -9.85 -0.06 -4.08 16 14 C 0.11 1.71 4.22 -67.12 -0.28 1.43 16 15 C -0.17 -2.85 7.31 -25.83 -0.19 -3.04 16 16 C 0.18 3.30 4.48 -67.03 -0.30 3.00 16 17 N -0.73 -16.94 5.21 -52.55 -0.27 -17.21 16 18 C -0.25 -6.89 10.45 -15.06 -0.16 -7.04 16 19 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 20 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 21 N -0.93 -29.05 13.97 55.49 0.78 -28.27 16 22 Si 0.88 21.70 27.74 -169.99 -4.71 16.99 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 26 C -0.16 -2.61 7.34 -25.92 -0.19 -2.80 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.82 6.10 -51.93 -0.32 0.50 16 29 H 0.10 1.07 5.26 -52.10 -0.27 0.80 16 30 H 0.16 2.00 7.34 -52.49 -0.39 1.61 16 31 H 0.40 -0.01 6.97 -40.82 -0.28 -0.30 16 32 H 0.41 0.90 8.93 -40.82 -0.36 0.54 16 33 H 0.14 0.03 6.53 -52.49 -0.34 -0.32 16 34 H 0.17 0.39 8.06 -52.49 -0.42 -0.03 16 35 H 0.12 1.86 7.20 -51.93 -0.37 1.49 16 36 H 0.08 1.38 6.67 -51.93 -0.35 1.03 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.09 1.69 8.10 -51.93 -0.42 1.27 16 39 H 0.36 8.16 5.79 -40.82 -0.24 7.92 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.08 1.25 6.88 -51.92 -0.36 0.89 16 LS Contribution 348.84 15.07 5.26 5.26 Total: -1.00 -36.71 348.84 -7.11 -43.82 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -4.98 Total: 7.27 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -3.02 Total: 3.04 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: 0.18 Total: -60.62 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.18 Total: -15.76 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.99 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.71 -7.11 -43.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999933998.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.727 kcal (2) G-P(sol) polarization free energy of solvation -36.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds