Wall clock time and date at job start Fri Apr 10 2020 18:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34774 * 120.00167 * 2 1 4 4 O 1.21507 * 120.00191 * 182.09588 * 3 2 1 5 5 C 1.48167 * 120.00033 * 2.08916 * 3 2 1 6 6 C 1.39251 * 119.65932 * 172.80188 * 5 3 2 7 7 C 1.39755 * 118.90467 * 180.02562 * 6 5 3 8 8 C 1.48147 * 120.88676 * 180.25139 * 7 6 5 9 9 N 1.34779 * 119.99631 * 179.71705 * 8 7 6 10 10 O 1.21512 * 119.99961 * 359.72066 * 8 7 6 11 11 C 1.39807 * 118.22153 * 359.97438 * 7 6 5 12 12 C 1.38497 * 119.19260 * 359.97438 * 11 7 6 13 13 N 1.31469 * 121.03247 * 0.02742 * 12 11 7 14 14 C 1.46501 * 119.99731 * 180.02562 * 2 1 3 15 15 C 1.53776 * 113.61703 * 39.13233 * 14 2 1 16 16 C 1.53953 * 87.02137 * 220.04796 * 15 14 2 17 17 N 1.46496 * 113.74119 * 139.94276 * 16 15 14 18 18 C 1.36943 * 120.00103 * 107.40443 * 17 16 15 19 19 H 1.08003 * 119.99623 * 359.97438 * 18 17 16 20 20 C 1.38807 * 120.00211 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99873 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 120.00102 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46722 * 90.00352 * 22 20 18 24 24 H 1.48500 * 109.47015 * 210.00149 * 22 20 18 25 25 H 1.48501 * 109.47071 * 330.00351 * 22 20 18 26 26 C 1.53777 * 87.10951 * 25.36418 * 16 15 14 27 27 H 1.08994 * 109.46970 * 83.78443 * 1 2 3 28 28 H 1.08995 * 109.47152 * 203.78518 * 1 2 3 29 29 H 1.09007 * 109.46887 * 323.78552 * 1 2 3 30 30 H 1.07998 * 120.54594 * 359.97438 * 6 5 3 31 31 H 0.97000 * 119.99808 * 359.97438 * 9 8 7 32 32 H 0.96998 * 119.99781 * 180.02562 * 9 8 7 33 33 H 1.07999 * 120.40723 * 179.97438 * 11 7 6 34 34 H 1.07999 * 119.48383 * 180.02562 * 12 11 7 35 35 H 1.09001 * 112.84915 * 170.33679 * 14 2 1 36 36 H 1.09001 * 113.61304 * 334.57182 * 15 14 2 37 37 H 1.09007 * 113.61273 * 105.46988 * 15 14 2 38 38 H 1.08996 * 113.54077 * 270.81291 * 16 15 14 39 39 H 0.97004 * 120.00646 * 287.40340 * 17 16 15 40 40 H 0.96999 * 119.99706 * 179.97438 * 21 20 18 41 41 H 1.09002 * 113.61424 * 220.08721 * 26 16 15 42 42 H 1.09008 * 113.61718 * 89.18419 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3534 1.1675 -0.0385 5 6 1.3989 2.4499 0.0468 6 6 2.0989 3.6442 0.1982 7 6 1.3850 4.8449 0.2409 8 6 2.0855 6.1411 0.3950 9 7 1.3796 7.2887 0.4283 10 8 3.2965 6.1695 0.4913 11 6 -0.0075 4.7904 0.1283 12 6 -0.6256 3.5600 -0.0208 13 7 0.0763 2.4490 -0.0571 14 6 2.1975 -1.2688 -0.0006 15 6 1.5590 -2.3483 -0.8903 16 6 1.9074 -3.3558 0.2205 17 7 0.8613 -4.3526 0.4620 18 6 1.0449 -5.6489 0.0607 19 1 1.9609 -5.9364 -0.4343 20 6 0.0536 -6.5932 0.2890 21 7 0.2303 -7.8393 -0.0963 22 14 -1.5309 -6.0959 1.1445 23 1 -2.5252 -5.6611 0.1308 24 1 -2.0697 -7.2546 1.9011 25 1 -1.2574 -4.9768 2.0815 26 6 1.8674 -2.1711 1.2001 27 1 -0.3633 0.1113 -1.0216 28 1 -0.3633 -0.9403 0.4144 29 1 -0.3633 0.8292 0.6072 30 1 3.1756 3.6424 0.2820 31 1 0.4130 7.2660 0.3509 32 1 1.8383 8.1375 0.5288 33 1 -0.5941 5.6968 0.1572 34 1 -1.7010 3.5126 -0.1086 35 1 3.2667 -1.1402 -0.1691 36 1 0.4874 -2.2146 -1.0381 37 1 2.0976 -2.5208 -1.8222 38 1 2.8972 -3.7990 0.1114 39 1 0.0385 -4.0944 0.9062 40 1 -0.4623 -8.4993 0.0637 41 1 2.6546 -2.2008 1.9535 42 1 0.8802 -1.9889 1.6249 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999933998.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:53 Heat of formation + Delta-G solvation = -1.728019 kcal Electronic energy + Delta-G solvation = -25759.747214 eV Core-core repulsion = 21933.786307 eV Total energy + Delta-G solvation = -3825.960907 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.15322 -41.07702 -40.04944 -39.19078 -36.38086 -35.28496 -34.84830 -33.44351 -32.73592 -32.20117 -28.04091 -27.02976 -26.56793 -26.08155 -25.29616 -23.61349 -22.53500 -21.09403 -20.46425 -19.35003 -19.27777 -18.58076 -17.97804 -17.60020 -16.98131 -16.76536 -16.64582 -16.29151 -16.22591 -16.00985 -15.60393 -15.33382 -15.01608 -14.77267 -14.62193 -14.54408 -14.09097 -13.61863 -13.54595 -13.36302 -13.26783 -12.94766 -12.81334 -12.29405 -12.09003 -11.83870 -11.80951 -11.59964 -11.55423 -11.31571 -11.15900 -10.91383 -10.80088 -10.41162 -10.30430 -9.61652 -9.28311 -8.00729 -5.35058 -0.66959 -0.31004 1.39709 1.40126 1.44377 1.51521 1.78455 1.87027 2.28279 2.50635 2.72364 2.94051 3.28478 3.51241 3.57415 3.62453 3.74406 3.75820 3.77476 3.82237 4.03362 4.14203 4.20308 4.40465 4.58285 4.62849 4.70720 4.80427 4.82056 4.84477 4.87730 5.00268 5.10931 5.14229 5.36121 5.47493 5.61810 5.75323 5.78459 6.23024 6.27798 6.28914 6.56080 6.97340 7.08403 7.14971 7.83523 8.04413 9.20624 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.030572 B = 0.002458 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.654635 B =11390.407315 C =12062.504307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.576 5.576 3 C 0.556 3.444 4 O -0.576 6.576 5 C 0.064 3.936 6 C -0.075 4.075 7 C -0.107 4.107 8 C 0.562 3.438 9 N -0.816 5.816 10 O -0.582 6.582 11 C -0.086 4.086 12 C 0.098 3.902 13 N -0.441 5.441 14 C 0.123 3.877 15 C -0.160 4.160 16 C 0.158 3.842 17 N -0.735 5.735 18 C -0.235 4.235 19 H 0.056 0.944 20 C -0.068 4.068 21 N -0.985 5.985 22 Si 0.959 3.041 23 H -0.275 1.275 24 H -0.298 1.298 25 H -0.248 1.248 26 C -0.148 4.148 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.129 0.871 31 H 0.422 0.578 32 H 0.418 0.582 33 H 0.200 0.800 34 H 0.218 0.782 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.368 0.632 40 H 0.258 0.742 41 H 0.074 0.926 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.751 36.177 1.826 37.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.305 5.305 3 C 0.344 3.656 4 O -0.456 6.456 5 C -0.072 4.072 6 C -0.097 4.097 7 C -0.118 4.118 8 C 0.347 3.653 9 N -0.382 5.382 10 O -0.462 6.462 11 C -0.106 4.106 12 C -0.061 4.061 13 N -0.154 5.154 14 C 0.019 3.981 15 C -0.202 4.202 16 C 0.048 3.952 17 N -0.377 5.377 18 C -0.366 4.366 19 H 0.074 0.926 20 C -0.259 4.259 21 N -0.635 5.635 22 Si 0.785 3.215 23 H -0.201 1.201 24 H -0.225 1.225 25 H -0.173 1.173 26 C -0.188 4.188 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.137 0.863 30 H 0.147 0.853 31 H 0.256 0.744 32 H 0.251 0.749 33 H 0.217 0.783 34 H 0.235 0.765 35 H 0.125 0.875 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.202 0.798 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.665 34.998 1.671 35.866 hybrid contribution -0.150 0.402 0.323 0.537 sum -7.815 35.400 1.994 36.307 Atomic orbital electron populations 1.22516 0.76544 1.04021 1.03645 1.47795 1.08855 1.04417 1.69403 1.18362 0.86363 0.84084 0.76761 1.90762 1.14704 1.87458 1.52726 1.20703 0.90851 0.92533 1.03114 1.22054 1.01971 0.91551 0.94094 1.20328 0.95500 0.92759 1.03245 1.18226 0.86229 0.85130 0.75714 1.43467 1.12587 1.07657 1.74483 1.90863 1.16023 1.87902 1.51411 1.23106 0.92062 1.02420 0.93023 1.23856 1.02784 0.86151 0.93323 1.67986 1.05552 1.32393 1.09445 1.22401 0.97215 0.80801 0.97663 1.24129 1.01642 0.95524 0.98863 1.21584 0.92267 0.86850 0.94503 1.42615 1.18327 1.05875 1.70842 1.19092 1.01690 0.85615 1.30224 0.92638 1.25583 1.02468 0.95262 1.02567 1.69903 1.35995 1.03135 1.54458 0.85354 0.79669 0.77564 0.78863 1.20086 1.22538 1.17280 1.23798 1.02814 0.94925 0.97224 0.91805 0.91704 0.86315 0.85270 0.74450 0.74912 0.78302 0.76524 0.87457 0.89207 0.91893 0.90564 0.79770 0.93376 0.90694 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.57 8.02 127.77 1.02 2.60 16 2 N -0.58 -15.78 3.08 -822.70 -2.54 -18.32 16 3 C 0.56 16.64 7.66 86.88 0.67 17.31 16 4 O -0.58 -21.38 15.81 -3.74 -0.06 -21.44 16 5 C 0.06 1.45 6.62 41.90 0.28 1.73 16 6 C -0.07 -1.66 9.19 22.88 0.21 -1.45 16 7 C -0.11 -1.46 5.91 -19.90 -0.12 -1.57 16 8 C 0.56 8.26 8.07 86.88 0.70 8.96 16 9 N -0.82 -2.37 8.83 -175.40 -1.55 -3.92 16 10 O -0.58 -15.23 17.28 -3.75 -0.06 -15.29 16 11 C -0.09 -0.31 9.62 22.71 0.22 -0.09 16 12 C 0.10 0.58 11.17 84.81 0.95 1.53 16 13 N -0.44 -6.89 6.01 -185.07 -1.11 -8.00 16 14 C 0.12 3.73 4.22 45.52 0.19 3.92 16 15 C -0.16 -5.23 7.31 31.18 0.23 -5.00 16 16 C 0.16 5.94 4.48 45.58 0.20 6.15 16 17 N -0.74 -33.58 5.21 -320.18 -1.67 -35.25 16 18 C -0.24 -13.35 10.45 84.03 0.88 -12.47 16 19 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 20 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 21 N -0.98 -63.21 13.97 21.65 0.30 -62.91 16 22 Si 0.96 44.53 27.74 68.60 1.90 46.43 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 25 H -0.25 -10.24 6.52 99.48 0.65 -9.59 16 26 C -0.15 -4.54 7.34 31.12 0.23 -4.31 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.40 6.10 -2.39 -0.01 1.39 16 29 H 0.12 2.14 5.26 -2.73 -0.01 2.12 16 30 H 0.13 3.63 7.34 -2.91 -0.02 3.61 16 31 H 0.42 -2.37 6.97 -92.71 -0.65 -3.01 16 32 H 0.42 0.57 8.93 -92.71 -0.83 -0.26 16 33 H 0.20 -1.55 6.53 -2.91 -0.02 -1.57 16 34 H 0.22 -0.67 8.06 -2.91 -0.02 -0.69 16 35 H 0.11 3.52 7.20 -2.39 -0.02 3.50 16 36 H 0.09 2.84 6.67 -2.39 -0.02 2.82 16 37 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.08 3.03 8.10 -2.39 -0.02 3.01 16 39 H 0.37 15.81 5.79 -92.71 -0.54 15.28 16 40 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.09 2.64 6.88 -2.38 -0.02 2.63 16 Total: -1.00 -87.18 348.84 0.38 -86.81 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -0.96 Total: 18.10 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 6.12 Total: 13.80 kcal Atomic # 7 Polarization: -121.84 SS G_CDS: -6.56 Total: -128.40 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -0.12 Total: -36.74 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.90 Total: 46.43 kcal Total: -87.18 0.38 -86.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999933998.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.080 kcal (2) G-P(sol) polarization free energy of solvation -87.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds