Wall clock time and date at job start Fri Apr 10 2020 18:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34770 * 119.89118 * 2 1 4 4 N 1.30441 * 121.81752 * 179.74437 * 3 2 1 5 5 C 1.34319 * 121.48075 * 0.54468 * 4 3 2 6 6 C 1.48556 * 120.20955 * 179.70738 * 5 4 3 7 7 O 1.21475 * 119.99764 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00126 * 0.02562 * 6 5 4 9 9 C 1.46506 * 119.99868 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.46975 * 179.97438 * 9 8 6 11 11 C 1.29452 * 117.68946 * 94.99963 * 10 9 8 12 12 C 1.50324 * 123.65018 * 180.85772 * 11 10 9 13 13 N 1.47007 * 109.16714 * 349.02489 * 12 11 10 14 14 C 1.36935 * 121.37693 * 222.97339 * 13 12 11 15 15 H 1.07997 * 120.00302 * 155.97464 * 14 13 12 16 16 C 1.38818 * 119.99607 * 335.96637 * 14 13 12 17 17 N 1.31620 * 120.00355 * 344.51736 * 16 14 13 18 18 Si 1.86796 * 119.99719 * 164.51799 * 16 14 13 19 19 H 1.48505 * 109.47287 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47355 * 119.99858 * 18 16 14 21 21 H 1.48497 * 109.47275 * 240.00216 * 18 16 14 22 22 C 1.47340 * 117.24960 * 42.94652 * 13 12 11 23 23 C 1.49962 * 117.69703 * 274.74156 * 10 9 8 24 24 C 1.37919 * 119.57925 * 359.73173 * 5 4 3 25 25 C 1.34983 * 119.88950 * 180.28497 * 2 1 3 26 26 O 1.21903 * 120.71705 * 359.97438 * 25 2 1 27 27 H 1.09002 * 109.46592 * 269.72231 * 1 2 3 28 28 H 1.08998 * 109.47427 * 149.72246 * 1 2 3 29 29 H 1.08997 * 109.47145 * 29.71989 * 1 2 3 30 30 H 1.08002 * 119.09237 * 0.02562 * 3 2 1 31 31 H 0.96997 * 120.00263 * 359.97438 * 8 6 5 32 32 H 1.08997 * 109.47276 * 300.00121 * 9 8 6 33 33 H 1.09005 * 109.47145 * 60.00601 * 9 8 6 34 34 H 1.08000 * 118.17959 * 0.88690 * 11 10 9 35 35 H 1.08996 * 109.52199 * 108.93396 * 12 11 10 36 36 H 1.09007 * 109.52146 * 229.12026 * 12 11 10 37 37 H 0.96997 * 120.00061 * 179.97438 * 17 16 14 38 38 H 1.09003 * 109.77398 * 57.81001 * 22 13 12 39 39 H 1.08994 * 109.78158 * 178.61799 * 22 13 12 40 40 H 1.09000 * 109.31849 * 281.29270 * 23 10 9 41 41 H 1.09005 * 109.31748 * 40.71783 * 23 10 9 42 42 H 1.08003 * 120.83830 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1367 1.1684 0.0000 4 7 3.4403 1.2123 0.0049 5 6 4.1799 0.0910 -0.0006 6 6 5.6631 0.1739 -0.0013 7 8 6.3282 -0.8425 -0.0068 8 7 6.2708 1.3769 0.0042 9 6 7.7336 1.4586 0.0041 10 6 8.1559 2.9052 0.0101 11 6 8.4207 3.4498 1.1543 12 6 8.8349 4.8856 1.3175 13 7 9.1364 5.4542 -0.0042 14 6 10.2311 6.2522 -0.2042 15 1 10.6601 6.3431 -1.1911 16 6 10.7893 6.9444 0.8617 17 7 10.1123 7.0860 1.9815 18 14 12.5015 7.6750 0.7068 19 1 13.0463 7.3781 -0.6424 20 1 12.4315 9.1458 0.9002 21 1 13.3882 7.0816 1.7396 22 6 8.2125 5.1295 -1.1051 23 6 8.2455 3.6107 -1.3102 24 6 3.5535 -1.1377 -0.0061 25 6 2.1377 -1.1703 -0.0058 26 8 1.5394 -2.2324 -0.0106 27 1 -0.3632 -0.0050 1.0277 28 1 -0.3634 -0.8874 -0.5181 29 1 -0.3633 0.8925 -0.5095 30 1 1.5802 2.0940 0.0004 31 1 5.7398 2.1885 0.0082 32 1 8.1254 0.9616 0.8915 33 1 8.1248 0.9701 -0.8885 34 1 8.3401 2.8385 2.0409 35 1 8.0238 5.4483 1.7796 36 1 9.7223 4.9393 1.9482 37 1 10.5025 7.5694 2.7264 38 1 7.2030 5.4486 -0.8455 39 1 8.5353 5.6306 -2.0176 40 1 9.1745 3.3304 -1.8065 41 1 7.4027 3.3148 -1.9350 42 1 4.1282 -2.0521 -0.0111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000794351.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:56 Heat of formation + Delta-G solvation = -3.775129 kcal Electronic energy + Delta-G solvation = -25634.474751 eV Core-core repulsion = 21808.425074 eV Total energy + Delta-G solvation = -3826.049676 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.90662 -40.90743 -39.36479 -38.77874 -36.51051 -36.33588 -34.54974 -32.62708 -32.21728 -31.40241 -29.58183 -28.36459 -26.34336 -25.59948 -24.97760 -24.29338 -22.81913 -21.96472 -19.97776 -19.46772 -19.12078 -18.15647 -17.54850 -17.47164 -17.09707 -17.03559 -16.79430 -16.36776 -15.79096 -15.56346 -15.43120 -15.22848 -15.03134 -14.57271 -14.48108 -14.40844 -13.98281 -13.86690 -13.56802 -13.45591 -13.24123 -12.91267 -12.79680 -12.59145 -12.19048 -12.08294 -11.94326 -11.67964 -11.50005 -11.44244 -11.27377 -11.08581 -10.67410 -10.21418 -9.76563 -9.64428 -8.72391 -7.86477 -5.27147 -0.88686 0.51037 1.14283 1.37785 1.47547 1.50168 1.54371 1.59672 2.11030 2.52855 2.54099 2.85429 3.30670 3.31426 3.64112 3.66133 3.86278 3.93287 3.98953 4.09630 4.37159 4.45104 4.48133 4.51244 4.57191 4.65532 4.75182 4.83966 4.87373 4.94663 5.12999 5.17681 5.23791 5.26536 5.37235 5.43099 5.51583 5.64200 5.78669 6.18327 6.28621 6.36383 6.53612 6.61348 6.98351 7.16034 7.86260 8.39650 9.22156 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.029663 B = 0.002329 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.717586 B =12019.310082 C =12451.813417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.516 5.516 3 C 0.399 3.601 4 N -0.543 5.543 5 C 0.145 3.855 6 C 0.562 3.438 7 O -0.563 6.563 8 N -0.684 5.684 9 C 0.163 3.837 10 C -0.139 4.139 11 C -0.139 4.139 12 C 0.205 3.795 13 N -0.616 5.616 14 C -0.253 4.253 15 H 0.070 0.930 16 C -0.055 4.055 17 N -0.939 5.939 18 Si 0.965 3.035 19 H -0.268 1.268 20 H -0.292 1.292 21 H -0.293 1.293 22 C 0.139 3.861 23 C -0.084 4.084 24 C -0.241 4.241 25 C 0.514 3.486 26 O -0.569 6.569 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.142 0.858 30 H 0.274 0.726 31 H 0.421 0.579 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.017 0.983 36 H 0.056 0.944 37 H 0.249 0.751 38 H 0.031 0.969 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.277 -9.759 -4.817 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.231 5.231 3 C 0.117 3.883 4 N -0.267 5.267 5 C 0.022 3.978 6 C 0.347 3.653 7 O -0.441 6.441 8 N -0.335 5.335 9 C 0.040 3.960 10 C -0.140 4.140 11 C -0.159 4.159 12 C 0.080 3.920 13 N -0.340 5.340 14 C -0.383 4.383 15 H 0.088 0.912 16 C -0.249 4.249 17 N -0.586 5.586 18 Si 0.794 3.206 19 H -0.192 1.192 20 H -0.219 1.219 21 H -0.220 1.220 22 C 0.014 3.986 23 C -0.123 4.123 24 C -0.268 4.268 25 C 0.313 3.687 26 O -0.450 6.450 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.160 0.840 30 H 0.289 0.711 31 H 0.259 0.741 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.131 0.869 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -20.587 -10.415 -4.714 23.548 hybrid contribution 0.657 -0.061 0.438 0.792 sum -19.930 -10.476 -4.276 22.918 Atomic orbital electron populations 1.22636 0.73376 1.07162 1.05957 1.46799 1.12626 1.07269 1.56438 1.26172 0.88127 0.91038 0.82990 1.68340 1.05871 1.28234 1.24275 1.21139 0.93706 0.89756 0.93159 1.18151 0.86320 0.83784 0.77049 1.90790 1.65691 1.36157 1.51511 1.45902 1.07721 1.08361 1.71503 1.20405 0.79182 0.93856 1.02549 1.20559 1.03512 0.94385 0.95561 1.22969 0.97525 0.97607 0.97802 1.19409 0.97798 0.87510 0.87320 1.44422 1.27328 1.56019 1.06188 1.19539 1.04027 1.19302 0.95473 0.91202 1.25711 1.02412 0.99480 0.97336 1.70162 1.37227 1.45839 1.05352 0.85226 0.80409 0.77289 0.77654 1.19196 1.21944 1.21982 1.21182 0.92585 0.93751 0.91088 1.20729 1.01860 0.95653 0.94041 1.23302 0.93615 1.00227 1.09655 1.17227 0.88467 0.84062 0.78937 1.90928 1.70953 1.29908 1.53220 0.88562 0.90289 0.84023 0.71100 0.74100 0.91345 0.90585 0.86947 0.96583 0.92543 0.94164 0.95090 0.92269 0.91783 0.89399 0.83155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.12 10.39 127.77 1.33 1.45 16 2 N -0.52 -5.39 2.97 -678.23 -2.01 -7.40 16 3 C 0.40 2.58 11.45 180.37 2.07 4.64 16 4 N -0.54 -8.16 9.64 -188.17 -1.81 -9.98 16 5 C 0.15 3.18 6.77 41.44 0.28 3.46 16 6 C 0.56 15.05 7.83 87.00 0.68 15.73 16 7 O -0.56 -18.85 16.37 -3.64 -0.06 -18.91 16 8 N -0.68 -16.59 5.54 -468.99 -2.60 -19.19 16 9 C 0.16 4.38 5.66 85.63 0.48 4.87 16 10 C -0.14 -4.33 5.22 -15.14 -0.08 -4.41 16 11 C -0.14 -5.00 9.47 27.11 0.26 -4.74 16 12 C 0.20 9.60 5.23 85.42 0.45 10.05 16 13 N -0.62 -29.95 3.01 -703.00 -2.11 -32.06 16 14 C -0.25 -13.65 9.71 84.04 0.82 -12.84 16 15 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 16 C -0.05 -3.01 5.01 84.86 0.43 -2.58 16 17 N -0.94 -54.51 11.08 21.65 0.24 -54.27 16 18 Si 0.97 44.50 29.58 68.60 2.03 46.53 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 22 C 0.14 5.32 6.59 86.32 0.57 5.89 16 23 C -0.08 -2.60 5.95 29.72 0.18 -2.42 16 24 C -0.24 -5.70 9.67 23.03 0.22 -5.48 16 25 C 0.51 11.06 7.47 85.04 0.63 11.69 16 26 O -0.57 -16.30 16.77 -5.00 -0.08 -16.38 16 27 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.08 0.56 7.44 -2.39 -0.02 0.55 16 29 H 0.14 -0.96 8.00 -2.39 -0.02 -0.98 16 30 H 0.27 -1.76 8.01 -2.91 -0.02 -1.78 16 31 H 0.42 9.10 7.83 -92.71 -0.73 8.38 16 32 H 0.07 1.92 7.78 -2.39 -0.02 1.90 16 33 H 0.08 2.03 8.11 -2.38 -0.02 2.01 16 34 H 0.11 3.62 7.73 -2.91 -0.02 3.60 16 35 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 3.03 6.41 -2.38 -0.02 3.02 16 37 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 38 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 2.21 7.96 -2.39 -0.02 2.19 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.15 4.01 7.68 -2.91 -0.02 3.99 16 Total: -1.00 -79.27 356.54 2.22 -77.05 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.33 Total: 9.31 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 8.31 Total: 25.31 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -8.30 Total: -122.90 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -0.14 Total: -35.30 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -79.27 2.22 -77.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000794351.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.275 kcal (2) G-P(sol) polarization free energy of solvation -79.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds