Wall clock time and date at job start Fri Apr 10 2020 18:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34770 * 120.00306 * 2 1 4 4 O 1.21488 * 120.00141 * 0.02562 * 3 2 1 5 5 C 1.48336 * 120.00033 * 180.02562 * 3 2 1 6 6 C 1.39299 * 119.57495 * 180.02562 * 5 3 2 7 7 C 1.38447 * 119.19556 * 179.97438 * 6 5 3 8 8 C 1.39866 * 118.35674 * 359.97438 * 7 6 5 9 9 C 1.48007 * 120.46435 * 179.97438 * 8 7 6 10 10 O 1.21530 * 120.00060 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99958 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99782 * 179.97438 * 11 9 8 13 13 H 1.09002 * 110.78172 * 323.20910 * 12 11 9 14 14 C 1.55405 * 110.69436 * 199.81994 * 12 11 9 15 15 C 1.54914 * 101.66697 * 277.04903 * 14 12 11 16 16 N 1.47426 * 104.82992 * 323.07703 * 15 14 12 17 17 C 1.36936 * 125.64483 * 204.16378 * 16 15 14 18 18 H 1.08004 * 119.99836 * 179.97438 * 17 16 15 19 19 C 1.38815 * 120.00358 * 359.95842 * 17 16 15 20 20 N 1.31619 * 119.99732 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46852 * 89.99788 * 21 19 17 23 23 H 1.48497 * 109.47226 * 209.99639 * 21 19 17 24 24 H 1.48500 * 109.46864 * 330.00142 * 21 19 17 25 25 C 1.47018 * 108.70517 * 24.12623 * 16 15 14 26 26 C 1.39727 * 119.07584 * 0.25339 * 8 7 6 27 27 N 1.31423 * 120.71651 * 359.47902 * 26 8 7 28 28 H 1.08997 * 109.47559 * 59.99277 * 1 2 3 29 29 H 1.08991 * 109.47639 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46643 * 299.99812 * 1 2 3 31 31 H 0.97005 * 119.99572 * 180.02562 * 2 1 3 32 32 H 1.08004 * 120.40257 * 359.97438 * 6 5 3 33 33 H 1.08000 * 120.82213 * 179.97438 * 7 6 5 34 34 H 0.97002 * 120.00464 * 359.97438 * 11 9 8 35 35 H 1.09000 * 110.89538 * 158.97708 * 14 12 11 36 36 H 1.09001 * 111.03900 * 35.18193 * 14 12 11 37 37 H 1.08999 * 110.37121 * 204.23438 * 15 14 12 38 38 H 1.09001 * 110.45739 * 81.96050 * 15 14 12 39 39 H 0.96996 * 119.99954 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.88241 * 118.36067 * 25 16 15 41 41 H 1.09000 * 109.88049 * 239.37196 * 25 16 15 42 42 H 1.08000 * 119.64733 * 179.74201 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5315 2.2193 0.0005 5 6 3.6223 1.1670 -0.0006 6 6 4.3099 2.3785 0.0000 7 6 5.6943 2.3693 0.0000 8 6 6.3504 1.1340 0.0000 9 6 7.8290 1.0697 -0.0006 10 8 8.4818 2.0948 -0.0015 11 7 8.4516 -0.1256 -0.0011 12 6 9.9152 -0.1892 -0.0023 13 1 10.3365 0.6094 -0.6129 14 6 10.4041 -1.5794 -0.4956 15 6 10.3049 -2.4240 0.7992 16 7 10.7046 -1.5052 1.8806 17 6 11.2148 -1.8769 3.0958 18 1 11.4785 -1.1241 3.8239 19 6 11.3926 -3.2214 3.3921 20 7 11.0713 -4.1388 2.5047 21 14 12.0892 -3.7284 5.0495 22 1 10.9780 -3.9178 6.0164 23 1 12.8398 -5.0012 4.9026 24 1 13.0033 -2.6692 5.5472 25 6 10.4657 -0.1237 1.4380 26 6 5.5904 -0.0385 -0.0054 27 7 4.2772 0.0127 -0.0002 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.9499 -0.8401 -0.0004 32 1 3.7695 3.3137 0.0004 33 1 6.2538 3.2930 0.0000 34 1 7.9306 -0.9438 -0.0008 35 1 11.4337 -1.5263 -0.8495 36 1 9.7462 -1.9733 -1.2703 37 1 10.9866 -3.2732 0.7515 38 1 9.2819 -2.7678 0.9524 39 1 11.1952 -5.0783 2.7119 40 1 9.7365 0.3543 2.0922 41 1 11.4003 0.4370 1.4524 42 1 6.0875 -0.9973 -0.0097 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016010819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:16 Heat of formation + Delta-G solvation = -0.015196 kcal Electronic energy + Delta-G solvation = -25743.758808 eV Core-core repulsion = 21917.872175 eV Total energy + Delta-G solvation = -3825.886633 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.12607 -39.87684 -38.86735 -37.26164 -35.05617 -34.08527 -32.92958 -32.38358 -31.40374 -29.24492 -27.92112 -27.16161 -25.11284 -24.34776 -23.94111 -21.65556 -20.79568 -20.29096 -19.94323 -18.87570 -17.89952 -17.25804 -16.85034 -16.07272 -15.79196 -15.53430 -15.37409 -15.00276 -14.84586 -14.71928 -14.05052 -13.99704 -13.77544 -13.49005 -13.29069 -13.07795 -12.86860 -12.64694 -12.57619 -12.08727 -11.68709 -11.13380 -10.93087 -10.85834 -10.74891 -10.54816 -10.30319 -10.23906 -10.16212 -9.96499 -9.73809 -9.67650 -9.63040 -9.44136 -8.87944 -8.68655 -6.89942 -5.71639 -3.12614 -0.02918 0.83372 2.15153 2.72967 2.95076 3.13488 3.37045 3.42608 3.44189 3.61562 3.68383 4.36545 4.42433 4.45356 4.55079 4.68789 4.80950 4.87925 5.12566 5.19430 5.28976 5.37824 5.39981 5.42967 5.61070 5.65812 5.70982 5.77253 5.97089 6.08045 6.15566 6.25804 6.40281 6.43037 6.65386 6.91565 6.97864 7.31919 7.34913 7.54247 7.59394 7.76664 7.77812 8.19446 8.29423 9.16574 9.77024 10.40713 11.32707 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.002727 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.639482 B =10266.221578 C =11173.249597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.715 5.715 3 C 0.572 3.428 4 O -0.530 6.530 5 C 0.091 3.909 6 C -0.117 4.117 7 C -0.023 4.023 8 C -0.154 4.154 9 C 0.559 3.441 10 O -0.534 6.534 11 N -0.700 5.700 12 C 0.130 3.870 13 H 0.091 0.909 14 C -0.153 4.153 15 C 0.150 3.850 16 N -0.603 5.603 17 C -0.221 4.221 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.924 5.924 21 Si 0.915 3.085 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.127 3.873 26 C 0.135 3.865 27 N -0.462 5.462 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.415 0.585 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.400 0.600 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.011 0.989 39 H 0.252 0.748 40 H 0.026 0.974 41 H 0.033 0.967 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.363 6.448 -9.124 19.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.367 5.367 3 C 0.356 3.644 4 O -0.406 6.406 5 C -0.047 4.047 6 C -0.138 4.138 7 C -0.049 4.049 8 C -0.160 4.160 9 C 0.344 3.656 10 O -0.411 6.411 11 N -0.350 5.350 12 C 0.026 3.974 13 H 0.109 0.891 14 C -0.192 4.192 15 C 0.025 3.975 16 N -0.330 5.330 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.573 5.573 21 Si 0.745 3.255 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.000 4.000 26 C -0.026 4.026 27 N -0.173 5.173 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.251 0.749 32 H 0.173 0.827 33 H 0.175 0.825 34 H 0.236 0.764 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.029 0.971 39 H 0.063 0.937 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -16.790 6.963 -8.996 20.281 hybrid contribution 0.742 -0.413 0.986 1.302 sum -16.047 6.550 -8.010 19.094 Atomic orbital electron populations 1.21624 0.78953 1.02699 1.02543 1.45638 1.07891 1.09132 1.74006 1.17916 0.85711 0.84117 0.76608 1.90791 1.68792 1.31296 1.49753 1.21250 0.94208 0.89917 0.99362 1.22114 0.94178 0.99582 0.97935 1.21807 0.93527 0.98480 0.91119 1.21336 0.95266 0.95448 1.03932 1.17957 0.86277 0.84234 0.77150 1.90777 1.66523 1.33904 1.49927 1.45933 1.08294 1.07590 1.73221 1.22127 0.77894 0.99302 0.98074 0.89068 1.23403 1.00987 0.94549 1.00249 1.21968 0.99103 0.93915 0.82478 1.44507 1.74618 0.99312 1.14522 1.19087 1.33948 0.91519 0.90353 0.90504 1.24768 1.01773 0.95566 0.98548 1.69763 1.54179 0.99877 1.33446 0.86064 0.78541 0.77825 0.83029 1.21657 1.21622 1.20686 1.21680 0.97333 0.88897 0.92066 1.23010 0.88727 0.98091 0.92756 1.67518 1.10246 1.28172 1.11345 0.91932 0.90210 0.91898 0.74936 0.82698 0.82516 0.76430 0.90369 0.91600 0.87290 0.97121 0.93719 0.95621 0.94912 0.81358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 10.70 59.85 0.64 1.18 16 2 N -0.72 -6.07 5.70 -67.89 -0.39 -6.45 16 3 C 0.57 6.45 7.82 -12.11 -0.09 6.35 16 4 O -0.53 -7.29 16.31 5.38 0.09 -7.20 16 5 C 0.09 1.01 6.75 -82.93 -0.56 0.45 16 6 C -0.12 -1.22 9.62 -39.11 -0.38 -1.60 16 7 C -0.02 -0.25 9.71 -38.90 -0.38 -0.63 16 8 C -0.15 -1.85 5.90 -104.73 -0.62 -2.47 16 9 C 0.56 8.20 7.78 -12.26 -0.10 8.10 16 10 O -0.53 -9.44 16.14 5.34 0.09 -9.35 16 11 N -0.70 -10.10 5.07 -52.79 -0.27 -10.37 16 12 C 0.13 2.18 3.27 -65.96 -0.22 1.97 16 13 H 0.09 1.49 7.70 -51.93 -0.40 1.09 16 14 C -0.15 -2.56 6.65 -24.44 -0.16 -2.72 16 15 C 0.15 3.33 5.87 -2.53 -0.01 3.32 16 16 N -0.60 -14.83 3.39 -170.07 -0.58 -15.40 16 17 C -0.22 -6.03 10.27 -15.06 -0.15 -6.18 16 18 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 19 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 20 N -0.92 -25.89 10.09 55.49 0.56 -25.33 16 21 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.13 2.65 6.97 -3.07 -0.02 2.63 16 26 C 0.13 1.44 10.71 -17.17 -0.18 1.26 16 27 N -0.46 -4.99 9.52 -9.48 -0.09 -5.08 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.41 2.98 8.15 -40.82 -0.33 2.64 16 32 H 0.16 1.42 7.63 -52.48 -0.40 1.02 16 33 H 0.16 1.57 7.73 -52.49 -0.41 1.17 16 34 H 0.40 5.01 6.68 -40.82 -0.27 4.73 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.11 2.78 5.87 -51.93 -0.30 2.47 16 38 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.03 0.57 8.04 -51.93 -0.42 0.15 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.17 1.46 6.41 -52.49 -0.34 1.13 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -33.18 355.95 -7.95 -41.13 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.38 Total: 4.76 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: -2.33 Total: 11.25 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: -0.76 Total: -62.64 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.17 Total: -16.55 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.18 -7.95 -41.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016010819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.116 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds