Wall clock time and date at job start Fri Apr 10 2020 18:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34770 * 120.00306 * 2 1 4 4 O 1.21488 * 120.00141 * 0.02562 * 3 2 1 5 5 C 1.48336 * 120.00033 * 180.02562 * 3 2 1 6 6 C 1.39299 * 119.57495 * 180.02562 * 5 3 2 7 7 C 1.38447 * 119.19556 * 179.97438 * 6 5 3 8 8 C 1.39866 * 118.35674 * 359.97438 * 7 6 5 9 9 C 1.48007 * 120.46435 * 179.97438 * 8 7 6 10 10 O 1.21530 * 120.00060 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99958 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99782 * 179.97438 * 11 9 8 13 13 H 1.09002 * 110.78172 * 323.20910 * 12 11 9 14 14 C 1.55405 * 110.69436 * 199.81994 * 12 11 9 15 15 C 1.54914 * 101.66697 * 277.04903 * 14 12 11 16 16 N 1.47426 * 104.82992 * 323.07703 * 15 14 12 17 17 C 1.36936 * 125.64483 * 204.16378 * 16 15 14 18 18 H 1.08004 * 119.99836 * 179.97438 * 17 16 15 19 19 C 1.38815 * 120.00358 * 359.95842 * 17 16 15 20 20 N 1.31619 * 119.99732 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46852 * 89.99788 * 21 19 17 23 23 H 1.48497 * 109.47226 * 209.99639 * 21 19 17 24 24 H 1.48500 * 109.46864 * 330.00142 * 21 19 17 25 25 C 1.47018 * 108.70517 * 24.12623 * 16 15 14 26 26 C 1.39727 * 119.07584 * 0.25339 * 8 7 6 27 27 N 1.31423 * 120.71651 * 359.47902 * 26 8 7 28 28 H 1.08997 * 109.47559 * 59.99277 * 1 2 3 29 29 H 1.08991 * 109.47639 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46643 * 299.99812 * 1 2 3 31 31 H 0.97005 * 119.99572 * 180.02562 * 2 1 3 32 32 H 1.08004 * 120.40257 * 359.97438 * 6 5 3 33 33 H 1.08000 * 120.82213 * 179.97438 * 7 6 5 34 34 H 0.97002 * 120.00464 * 359.97438 * 11 9 8 35 35 H 1.09000 * 110.89538 * 158.97708 * 14 12 11 36 36 H 1.09001 * 111.03900 * 35.18193 * 14 12 11 37 37 H 1.08999 * 110.37121 * 204.23438 * 15 14 12 38 38 H 1.09001 * 110.45739 * 81.96050 * 15 14 12 39 39 H 0.96996 * 119.99954 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.88241 * 118.36067 * 25 16 15 41 41 H 1.09000 * 109.88049 * 239.37196 * 25 16 15 42 42 H 1.08000 * 119.64733 * 179.74201 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5315 2.2193 0.0005 5 6 3.6223 1.1670 -0.0006 6 6 4.3099 2.3785 0.0000 7 6 5.6943 2.3693 0.0000 8 6 6.3504 1.1340 0.0000 9 6 7.8290 1.0697 -0.0006 10 8 8.4818 2.0948 -0.0015 11 7 8.4516 -0.1256 -0.0011 12 6 9.9152 -0.1892 -0.0023 13 1 10.3365 0.6094 -0.6129 14 6 10.4041 -1.5794 -0.4956 15 6 10.3049 -2.4240 0.7992 16 7 10.7046 -1.5052 1.8806 17 6 11.2148 -1.8769 3.0958 18 1 11.4785 -1.1241 3.8239 19 6 11.3926 -3.2214 3.3921 20 7 11.0713 -4.1388 2.5047 21 14 12.0892 -3.7284 5.0495 22 1 10.9780 -3.9178 6.0164 23 1 12.8398 -5.0012 4.9026 24 1 13.0033 -2.6692 5.5472 25 6 10.4657 -0.1237 1.4380 26 6 5.5904 -0.0385 -0.0054 27 7 4.2772 0.0127 -0.0002 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.9499 -0.8401 -0.0004 32 1 3.7695 3.3137 0.0004 33 1 6.2538 3.2930 0.0000 34 1 7.9306 -0.9438 -0.0008 35 1 11.4337 -1.5263 -0.8495 36 1 9.7462 -1.9733 -1.2703 37 1 10.9866 -3.2732 0.7515 38 1 9.2819 -2.7678 0.9524 39 1 11.1952 -5.0783 2.7119 40 1 9.7365 0.3543 2.0922 41 1 11.4003 0.4370 1.4524 42 1 6.0875 -0.9973 -0.0097 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016010819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:16 Heat of formation + Delta-G solvation = -24.588801 kcal Electronic energy + Delta-G solvation = -25744.824400 eV Core-core repulsion = 21917.872175 eV Total energy + Delta-G solvation = -3826.952225 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.04667 -40.96030 -39.88449 -38.76783 -35.82322 -35.61091 -33.99133 -33.69972 -32.63855 -30.93225 -29.15125 -28.26892 -26.58191 -25.65187 -24.80038 -22.72615 -22.04469 -21.73743 -21.34399 -19.72292 -19.12881 -18.64597 -18.16452 -17.25187 -16.72159 -16.62839 -16.43613 -16.20494 -16.15692 -15.86359 -15.59433 -15.15682 -14.87269 -14.66290 -14.30171 -14.27534 -13.90074 -13.80412 -13.69940 -13.38429 -13.10444 -13.00194 -12.79917 -12.33538 -12.13167 -12.01179 -11.82568 -11.65152 -11.47398 -11.33884 -11.17553 -10.73940 -10.72652 -10.56470 -10.22182 -10.10001 -8.87491 -7.77404 -5.20372 -0.93875 -0.00208 1.21979 1.47906 1.48145 1.57139 1.90023 1.96686 2.03170 2.49778 2.70401 2.87154 3.32677 3.48167 3.58068 3.66526 3.73184 3.76638 3.83533 3.95677 4.07949 4.31811 4.42646 4.49857 4.61490 4.67643 4.74235 4.76466 4.83773 4.91909 4.93434 5.00721 5.07535 5.23377 5.29206 5.45110 5.51573 5.66178 5.83270 6.20211 6.34066 6.41921 6.52678 7.00117 7.04844 7.13677 7.79000 8.41302 9.23757 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.002727 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.639482 B =10266.221578 C =11173.249597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.705 5.705 3 C 0.567 3.433 4 O -0.561 6.561 5 C 0.086 3.914 6 C -0.116 4.116 7 C -0.019 4.019 8 C -0.165 4.165 9 C 0.563 3.437 10 O -0.566 6.566 11 N -0.695 5.695 12 C 0.146 3.854 13 H 0.104 0.896 14 C -0.132 4.132 15 C 0.151 3.849 16 N -0.622 5.622 17 C -0.240 4.240 18 H 0.072 0.928 19 C -0.060 4.060 20 N -0.942 5.942 21 Si 0.975 3.025 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.275 1.275 25 C 0.125 3.875 26 C 0.141 3.859 27 N -0.461 5.461 28 H 0.060 0.940 29 H 0.112 0.888 30 H 0.057 0.943 31 H 0.422 0.578 32 H 0.166 0.834 33 H 0.164 0.836 34 H 0.411 0.589 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.001 0.999 39 H 0.248 0.752 40 H 0.011 0.989 41 H 0.028 0.972 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.359 6.136 -9.808 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.355 5.355 3 C 0.351 3.649 4 O -0.440 6.440 5 C -0.052 4.052 6 C -0.137 4.137 7 C -0.045 4.045 8 C -0.171 4.171 9 C 0.350 3.650 10 O -0.446 6.446 11 N -0.346 5.346 12 C 0.041 3.959 13 H 0.121 0.879 14 C -0.171 4.171 15 C 0.027 3.973 16 N -0.349 5.349 17 C -0.369 4.369 18 H 0.089 0.911 19 C -0.253 4.253 20 N -0.592 5.592 21 Si 0.804 3.196 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.200 1.200 25 C -0.002 4.002 26 C -0.020 4.020 27 N -0.172 5.172 28 H 0.078 0.922 29 H 0.130 0.870 30 H 0.076 0.924 31 H 0.259 0.741 32 H 0.184 0.816 33 H 0.181 0.819 34 H 0.248 0.752 35 H 0.102 0.898 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.019 0.981 39 H 0.058 0.942 40 H 0.029 0.971 41 H 0.046 0.954 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -17.817 6.622 -9.696 21.338 hybrid contribution 0.991 -0.311 1.219 1.601 sum -16.827 6.311 -8.477 19.870 Atomic orbital electron populations 1.21825 0.77503 1.04766 1.02153 1.45699 1.08916 1.08626 1.72275 1.18008 0.85789 0.84448 0.76632 1.90775 1.69272 1.32382 1.51577 1.21409 0.94435 0.90292 0.99026 1.22219 0.93919 0.99975 0.97545 1.21915 0.93736 0.98497 0.90380 1.21152 0.93638 0.96458 1.05824 1.18251 0.87211 0.83580 0.75974 1.90762 1.67484 1.34933 1.51438 1.45813 1.07419 1.08251 1.73070 1.21865 0.79193 0.99653 0.95234 0.87859 1.23237 1.02384 0.93145 0.98292 1.21809 0.97380 0.93616 0.84518 1.44764 1.74468 1.01226 1.14417 1.19357 1.34172 0.91768 0.91648 0.91056 1.25501 1.02473 0.95615 1.01676 1.69994 1.54822 0.99701 1.34644 0.85131 0.77810 0.77293 0.79390 1.21516 1.21656 1.20011 1.21785 0.96948 0.86997 0.94452 1.23282 0.88623 0.98432 0.91699 1.67565 1.10155 1.27945 1.11560 0.92172 0.86964 0.92418 0.74085 0.81646 0.81894 0.75166 0.89843 0.87891 0.90673 0.98097 0.94192 0.97111 0.95433 0.79431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 10.70 127.77 1.37 2.23 16 2 N -0.70 -10.76 5.70 -487.02 -2.78 -13.54 16 3 C 0.57 12.13 7.82 86.93 0.68 12.81 16 4 O -0.56 -15.09 16.31 -3.68 -0.06 -15.14 16 5 C 0.09 1.80 6.75 41.96 0.28 2.08 16 6 C -0.12 -2.27 9.62 22.58 0.22 -2.05 16 7 C -0.02 -0.39 9.71 22.71 0.22 -0.17 16 8 C -0.17 -3.72 5.90 -19.93 -0.12 -3.83 16 9 C 0.56 15.73 7.78 86.83 0.68 16.41 16 10 O -0.57 -19.50 16.14 -3.81 -0.06 -19.56 16 11 N -0.69 -18.77 5.07 -439.22 -2.23 -21.00 16 12 C 0.15 4.64 3.27 46.27 0.15 4.79 16 13 H 0.10 3.14 7.70 -2.39 -0.02 3.12 16 14 C -0.13 -4.14 6.65 32.08 0.21 -3.92 16 15 C 0.15 6.67 5.87 86.86 0.51 7.18 16 16 N -0.62 -30.78 3.39 -691.97 -2.35 -33.13 16 17 C -0.24 -13.29 10.27 84.03 0.86 -12.43 16 18 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 19 C -0.06 -3.28 5.49 84.86 0.47 -2.82 16 20 N -0.94 -53.37 10.09 21.65 0.22 -53.15 16 21 Si 0.98 44.84 29.55 68.60 2.03 46.87 16 22 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 25 C 0.12 5.18 6.97 86.73 0.60 5.78 16 26 C 0.14 2.72 10.71 85.11 0.91 3.63 16 27 N -0.46 -9.10 9.52 -183.90 -1.75 -10.85 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.42 5.18 8.15 -92.70 -0.76 4.42 16 32 H 0.17 2.86 7.63 -2.91 -0.02 2.84 16 33 H 0.16 3.11 7.73 -2.91 -0.02 3.09 16 34 H 0.41 9.33 6.68 -92.71 -0.62 8.71 16 35 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.10 2.50 8.14 -2.39 -0.02 2.49 16 37 H 0.08 3.87 5.87 -2.39 -0.01 3.86 16 38 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 40 H 0.01 0.48 8.04 -2.39 -0.02 0.46 16 41 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.19 2.78 6.41 -2.91 -0.02 2.76 16 Total: -1.00 -71.99 355.95 -0.23 -72.22 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -0.30 Total: 17.59 kcal Atomic # 6 Polarization: 22.65 SS G_CDS: 7.05 Total: 29.69 kcal Atomic # 7 Polarization: -122.79 SS G_CDS: -8.89 Total: -131.67 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -0.12 Total: -34.71 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -71.99 -0.23 -72.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016010819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.636 kcal (2) G-P(sol) polarization free energy of solvation -71.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds