Wall clock time and date at job start Fri Apr 10 2020 18:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34772 * 119.99848 * 2 1 4 4 O 1.21489 * 120.00359 * 359.97438 * 3 2 1 5 5 C 1.48344 * 119.99861 * 179.97438 * 3 2 1 6 6 C 1.39305 * 119.56988 * 179.72476 * 5 3 2 7 7 C 1.38447 * 119.19205 * 180.25070 * 6 5 3 8 8 C 1.39876 * 118.35419 * 0.02944 * 7 6 5 9 9 C 1.48000 * 120.46189 * 180.02562 * 8 7 6 10 10 O 1.21533 * 120.00132 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00122 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00043 * 180.02562 * 11 9 8 13 13 H 1.09002 * 110.88833 * 31.11816 * 12 11 9 14 14 C 1.55160 * 111.00597 * 154.99918 * 12 11 9 15 15 C 1.54327 * 102.94273 * 153.57336 * 14 12 11 16 16 N 1.47017 * 107.27056 * 337.80685 * 15 14 12 17 17 C 1.36941 * 125.64714 * 178.95942 * 16 15 14 18 18 H 1.08001 * 119.99976 * 179.97438 * 17 16 15 19 19 C 1.38806 * 120.00022 * 359.97438 * 17 16 15 20 20 N 1.31621 * 119.99914 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99855 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47477 * 90.00135 * 21 19 17 23 23 H 1.48506 * 109.46884 * 209.99612 * 21 19 17 24 24 H 1.48495 * 109.47134 * 329.99384 * 21 19 17 25 25 C 1.47430 * 108.70734 * 358.93987 * 16 15 14 26 26 C 1.39723 * 119.07442 * 359.97438 * 8 7 6 27 27 N 1.31412 * 120.72214 * 359.97438 * 26 8 7 28 28 H 1.08996 * 109.47076 * 60.00290 * 1 2 3 29 29 H 1.09001 * 109.47068 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47502 * 299.99749 * 1 2 3 31 31 H 0.97003 * 120.00025 * 179.97438 * 2 1 3 32 32 H 1.07996 * 120.40366 * 0.25784 * 6 5 3 33 33 H 1.07997 * 120.82210 * 179.97438 * 7 6 5 34 34 H 0.96995 * 119.99836 * 359.97438 * 11 9 8 35 35 H 1.08995 * 110.72108 * 271.93990 * 14 12 11 36 36 H 1.09005 * 110.71557 * 35.03496 * 14 12 11 37 37 H 1.08999 * 109.88002 * 97.22242 * 15 14 12 38 38 H 1.08996 * 109.87828 * 218.39180 * 15 14 12 39 39 H 0.96995 * 119.99635 * 179.97438 * 20 19 17 40 40 H 1.08993 * 110.36903 * 265.28976 * 25 16 15 41 41 H 1.08998 * 110.36554 * 142.96032 * 25 16 15 42 42 H 1.08003 * 119.63998 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5314 2.2193 -0.0005 5 6 3.6222 1.1672 0.0006 6 6 4.3097 2.3788 -0.0053 7 6 5.6941 2.3696 -0.0100 8 6 6.3503 1.1343 -0.0093 9 6 7.8289 1.0701 -0.0136 10 8 8.4816 2.0953 -0.0183 11 7 8.4515 -0.1252 -0.0124 12 6 9.9151 -0.1887 -0.0161 13 1 10.3426 0.6667 0.5070 14 6 10.4155 -1.5229 0.5979 15 6 11.7877 -1.7221 -0.0796 16 7 11.7782 -0.9386 -1.3235 17 6 12.8185 -0.8320 -2.2076 18 1 12.7115 -0.2291 -3.0973 19 6 14.0105 -1.4988 -1.9603 20 7 14.1411 -2.2331 -0.8758 21 14 15.4299 -1.3527 -3.1660 22 1 16.2848 -0.1992 -2.7869 23 1 16.2372 -2.5988 -3.1335 24 1 14.8962 -1.1444 -4.5360 25 6 10.4629 -0.2870 -1.4619 26 6 5.5903 -0.0382 -0.0034 27 7 4.2772 0.0129 0.0020 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.9500 -0.8401 0.0004 32 1 3.7693 3.3138 -0.0060 33 1 6.2536 3.2934 -0.0149 34 1 7.9306 -0.9434 -0.0083 35 1 10.5283 -1.4319 1.6782 36 1 9.7377 -2.3397 0.3498 37 1 12.5808 -1.3649 0.5774 38 1 11.9390 -2.7772 -0.3072 39 1 14.9740 -2.6993 -0.7033 40 1 9.8009 -0.8956 -2.0778 41 1 10.5758 0.7077 -1.8931 42 1 6.0875 -0.9969 -0.0024 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016010820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:20 Heat of formation + Delta-G solvation = -0.939380 kcal Electronic energy + Delta-G solvation = -25360.554920 eV Core-core repulsion = 21534.628211 eV Total energy + Delta-G solvation = -3825.926709 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.21126 -39.92217 -38.90766 -37.28155 -35.13528 -34.29146 -33.01458 -32.42823 -31.53362 -29.23915 -28.00115 -27.07963 -25.17983 -24.24965 -24.03105 -21.63459 -20.84242 -20.50522 -20.03294 -18.95577 -17.94278 -17.37037 -16.82605 -16.11944 -15.87069 -15.60792 -15.46867 -15.03069 -14.92068 -14.63263 -14.25808 -14.00874 -13.94785 -13.55579 -13.16514 -13.12379 -12.81903 -12.71842 -12.48388 -12.29598 -11.86398 -11.11126 -10.96073 -10.84085 -10.80023 -10.54462 -10.38695 -10.26079 -10.11843 -9.97982 -9.82287 -9.76193 -9.72303 -9.52301 -8.90365 -8.63404 -6.88408 -5.74892 -3.08685 -0.11999 0.74033 2.07023 2.64686 2.87575 3.02451 3.39586 3.44730 3.46332 3.52437 3.58227 4.26414 4.32761 4.45329 4.48639 4.60437 4.72336 4.80133 5.05830 5.14762 5.21322 5.33248 5.38468 5.51478 5.55029 5.62687 5.66377 5.72398 5.89263 5.99224 6.08171 6.22675 6.34607 6.46749 6.61577 6.85491 6.89249 7.22224 7.44982 7.52061 7.52934 7.70005 7.77543 8.11846 8.21699 9.18220 9.77936 10.42104 11.37002 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.032420 B = 0.002151 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.449794 B =13014.259999 C =13245.813023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.715 5.715 3 C 0.571 3.429 4 O -0.529 6.529 5 C 0.091 3.909 6 C -0.116 4.116 7 C -0.022 4.022 8 C -0.154 4.154 9 C 0.557 3.443 10 O -0.526 6.526 11 N -0.706 5.706 12 C 0.126 3.874 13 H 0.100 0.900 14 C -0.150 4.150 15 C 0.179 3.821 16 N -0.603 5.603 17 C -0.227 4.227 18 H 0.079 0.921 19 C -0.009 4.009 20 N -0.923 5.923 21 Si 0.914 3.086 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.129 3.871 26 C 0.133 3.867 27 N -0.462 5.462 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.414 0.586 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.397 0.603 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.253 0.747 40 H 0.021 0.979 41 H 0.044 0.956 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.789 1.735 4.626 25.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.367 5.367 3 C 0.356 3.644 4 O -0.405 6.405 5 C -0.047 4.047 6 C -0.136 4.136 7 C -0.049 4.049 8 C -0.160 4.160 9 C 0.342 3.658 10 O -0.403 6.403 11 N -0.357 5.357 12 C 0.021 3.979 13 H 0.118 0.882 14 C -0.188 4.188 15 C 0.054 3.946 16 N -0.330 5.330 17 C -0.356 4.356 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.571 5.571 21 Si 0.744 3.256 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.002 3.998 26 C -0.028 4.028 27 N -0.174 5.174 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.250 0.750 32 H 0.174 0.826 33 H 0.176 0.824 34 H 0.232 0.768 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.062 0.938 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -25.057 2.360 4.603 25.586 hybrid contribution 1.262 -0.140 -0.614 1.410 sum -23.796 2.220 3.989 24.230 Atomic orbital electron populations 1.21627 0.78917 1.02701 1.02592 1.45630 1.07896 1.09079 1.74070 1.17919 0.85700 0.84134 0.76660 1.90800 1.68764 1.31290 1.49628 1.21249 0.94209 0.89892 0.99365 1.22134 0.94184 0.99628 0.97698 1.21840 0.93542 0.98580 0.90915 1.21349 0.95243 0.95467 1.03921 1.17997 0.86253 0.84340 0.77253 1.90816 1.66453 1.33845 1.49199 1.45946 1.08407 1.07452 1.73873 1.22424 0.76765 0.99736 0.98978 0.88183 1.23202 1.00533 0.95062 1.00045 1.21158 0.90039 0.96488 0.86945 1.44387 1.09785 1.55204 1.23657 1.19067 0.90529 1.25205 1.00769 0.90349 1.24811 0.97975 0.99662 0.98019 1.69940 1.25789 1.35097 1.26252 0.86087 0.82236 0.77043 0.80204 1.21538 1.21660 1.20676 1.21823 0.88390 0.96558 0.93072 1.22960 0.88752 0.97963 0.93166 1.67500 1.10214 1.28227 1.11426 0.91879 0.90214 0.91900 0.75005 0.82644 0.82435 0.76787 0.91464 0.91937 0.93138 0.93467 0.93694 0.96180 0.93798 0.81452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 10.70 59.84 0.64 1.09 16 2 N -0.72 -5.21 5.70 -67.89 -0.39 -5.60 16 3 C 0.57 5.81 7.82 -12.10 -0.09 5.71 16 4 O -0.53 -6.79 16.31 5.38 0.09 -6.70 16 5 C 0.09 0.90 6.75 -82.93 -0.56 0.34 16 6 C -0.12 -1.09 9.62 -39.11 -0.38 -1.46 16 7 C -0.02 -0.22 9.71 -38.89 -0.38 -0.60 16 8 C -0.15 -1.64 5.90 -104.73 -0.62 -2.26 16 9 C 0.56 7.59 7.79 -12.26 -0.10 7.49 16 10 O -0.53 -9.25 16.05 5.34 0.09 -9.16 16 11 N -0.71 -9.05 5.15 -52.61 -0.27 -9.32 16 12 C 0.13 2.13 3.42 -65.78 -0.23 1.90 16 13 H 0.10 1.89 7.54 -51.93 -0.39 1.50 16 14 C -0.15 -2.50 6.60 -24.89 -0.16 -2.67 16 15 C 0.18 4.14 5.37 -3.07 -0.02 4.12 16 16 N -0.60 -15.18 3.39 -170.07 -0.58 -15.76 16 17 C -0.23 -6.32 10.28 -15.06 -0.15 -6.48 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 20 N -0.92 -26.68 10.31 55.49 0.57 -26.11 16 21 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.13 2.66 6.93 -2.52 -0.02 2.64 16 26 C 0.13 1.16 10.71 -17.18 -0.18 0.97 16 27 N -0.46 -4.23 9.52 -9.48 -0.09 -4.32 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.41 2.40 8.15 -40.82 -0.33 2.07 16 32 H 0.16 1.30 7.63 -52.49 -0.40 0.90 16 33 H 0.16 1.48 7.73 -52.49 -0.41 1.07 16 34 H 0.40 3.74 6.62 -40.82 -0.27 3.47 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.91 8.00 -51.93 -0.42 0.49 16 37 H 0.05 1.30 7.38 -51.93 -0.38 0.92 16 38 H 0.05 1.20 7.51 -51.93 -0.39 0.81 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.17 1.00 6.41 -52.48 -0.34 0.66 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -34.42 356.35 -7.98 -42.40 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.41 Total: 1.72 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: -2.34 Total: 10.47 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.75 Total: -61.10 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.17 Total: -15.86 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.42 -7.98 -42.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016010820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.456 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds