Wall clock time and date at job start Fri Apr 10 2020 18:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34772 * 119.99848 * 2 1 4 4 O 1.21489 * 120.00359 * 359.97438 * 3 2 1 5 5 C 1.48344 * 119.99861 * 179.97438 * 3 2 1 6 6 C 1.39305 * 119.56988 * 179.72476 * 5 3 2 7 7 C 1.38447 * 119.19205 * 180.25070 * 6 5 3 8 8 C 1.39876 * 118.35419 * 0.02944 * 7 6 5 9 9 C 1.48000 * 120.46189 * 180.02562 * 8 7 6 10 10 O 1.21533 * 120.00132 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00122 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00043 * 180.02562 * 11 9 8 13 13 H 1.09002 * 110.88833 * 31.11816 * 12 11 9 14 14 C 1.55160 * 111.00597 * 154.99918 * 12 11 9 15 15 C 1.54327 * 102.94273 * 153.57336 * 14 12 11 16 16 N 1.47017 * 107.27056 * 337.80685 * 15 14 12 17 17 C 1.36941 * 125.64714 * 178.95942 * 16 15 14 18 18 H 1.08001 * 119.99976 * 179.97438 * 17 16 15 19 19 C 1.38806 * 120.00022 * 359.97438 * 17 16 15 20 20 N 1.31621 * 119.99914 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99855 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47477 * 90.00135 * 21 19 17 23 23 H 1.48506 * 109.46884 * 209.99612 * 21 19 17 24 24 H 1.48495 * 109.47134 * 329.99384 * 21 19 17 25 25 C 1.47430 * 108.70734 * 358.93987 * 16 15 14 26 26 C 1.39723 * 119.07442 * 359.97438 * 8 7 6 27 27 N 1.31412 * 120.72214 * 359.97438 * 26 8 7 28 28 H 1.08996 * 109.47076 * 60.00290 * 1 2 3 29 29 H 1.09001 * 109.47068 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47502 * 299.99749 * 1 2 3 31 31 H 0.97003 * 120.00025 * 179.97438 * 2 1 3 32 32 H 1.07996 * 120.40366 * 0.25784 * 6 5 3 33 33 H 1.07997 * 120.82210 * 179.97438 * 7 6 5 34 34 H 0.96995 * 119.99836 * 359.97438 * 11 9 8 35 35 H 1.08995 * 110.72108 * 271.93990 * 14 12 11 36 36 H 1.09005 * 110.71557 * 35.03496 * 14 12 11 37 37 H 1.08999 * 109.88002 * 97.22242 * 15 14 12 38 38 H 1.08996 * 109.87828 * 218.39180 * 15 14 12 39 39 H 0.96995 * 119.99635 * 179.97438 * 20 19 17 40 40 H 1.08993 * 110.36903 * 265.28976 * 25 16 15 41 41 H 1.08998 * 110.36554 * 142.96032 * 25 16 15 42 42 H 1.08003 * 119.63998 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5314 2.2193 -0.0005 5 6 3.6222 1.1672 0.0006 6 6 4.3097 2.3788 -0.0053 7 6 5.6941 2.3696 -0.0100 8 6 6.3503 1.1343 -0.0093 9 6 7.8289 1.0701 -0.0136 10 8 8.4816 2.0953 -0.0183 11 7 8.4515 -0.1252 -0.0124 12 6 9.9151 -0.1887 -0.0161 13 1 10.3426 0.6667 0.5070 14 6 10.4155 -1.5229 0.5979 15 6 11.7877 -1.7221 -0.0796 16 7 11.7782 -0.9386 -1.3235 17 6 12.8185 -0.8320 -2.2076 18 1 12.7115 -0.2291 -3.0973 19 6 14.0105 -1.4988 -1.9603 20 7 14.1411 -2.2331 -0.8758 21 14 15.4299 -1.3527 -3.1660 22 1 16.2848 -0.1992 -2.7869 23 1 16.2372 -2.5988 -3.1335 24 1 14.8962 -1.1444 -4.5360 25 6 10.4629 -0.2870 -1.4619 26 6 5.5903 -0.0382 -0.0034 27 7 4.2772 0.0129 0.0020 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.9500 -0.8401 0.0004 32 1 3.7693 3.3138 -0.0060 33 1 6.2536 3.2934 -0.0149 34 1 7.9306 -0.9434 -0.0083 35 1 10.5283 -1.4319 1.6782 36 1 9.7377 -2.3397 0.3498 37 1 12.5808 -1.3649 0.5774 38 1 11.9390 -2.7772 -0.3072 39 1 14.9740 -2.6993 -0.7033 40 1 9.8009 -0.8956 -2.0778 41 1 10.5758 0.7077 -1.8931 42 1 6.0875 -0.9969 -0.0024 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016010820.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:19 Heat of formation + Delta-G solvation = -27.320958 kcal Electronic energy + Delta-G solvation = -25361.698911 eV Core-core repulsion = 21534.628211 eV Total energy + Delta-G solvation = -3827.070700 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.02936 -40.92588 -39.85124 -38.81834 -35.81999 -35.74782 -34.04352 -33.71319 -32.69002 -30.97024 -29.12127 -28.20985 -26.60591 -25.53664 -24.77575 -22.69274 -22.05052 -21.83531 -21.50208 -19.70865 -19.17094 -18.61943 -18.13559 -17.25146 -16.71169 -16.60840 -16.45490 -16.19594 -16.11220 -15.86732 -15.76809 -15.11807 -14.80790 -14.57091 -14.30406 -14.12328 -13.96856 -13.81049 -13.77312 -13.66880 -13.08849 -12.95963 -12.77322 -12.43731 -12.13453 -12.03452 -11.81328 -11.63318 -11.56241 -11.37517 -11.16147 -10.72445 -10.70985 -10.55054 -10.21896 -10.09868 -8.91134 -7.86319 -5.22002 -0.92896 0.01792 1.23368 1.46185 1.48036 1.56448 1.88865 1.94070 2.01843 2.49927 2.72019 2.89441 3.32406 3.46505 3.60174 3.67659 3.69754 3.75922 3.91892 3.96131 4.05065 4.22414 4.44404 4.52022 4.60840 4.63032 4.73247 4.79390 4.85632 4.89555 4.95431 4.99326 5.07022 5.24800 5.30996 5.42948 5.47487 5.66279 5.75692 6.19420 6.22380 6.43253 6.54968 7.02766 7.07942 7.10600 7.75524 8.37973 9.23557 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.032420 B = 0.002151 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.449794 B =13014.259999 C =13245.813023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.703 5.703 3 C 0.566 3.434 4 O -0.563 6.563 5 C 0.088 3.912 6 C -0.117 4.117 7 C -0.022 4.022 8 C -0.164 4.164 9 C 0.562 3.438 10 O -0.571 6.571 11 N -0.690 5.690 12 C 0.146 3.854 13 H 0.079 0.921 14 C -0.128 4.128 15 C 0.182 3.818 16 N -0.626 5.626 17 C -0.245 4.245 18 H 0.077 0.923 19 C -0.064 4.064 20 N -0.948 5.948 21 Si 0.978 3.022 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.270 1.270 25 C 0.126 3.874 26 C 0.145 3.855 27 N -0.459 5.459 28 H 0.057 0.943 29 H 0.113 0.887 30 H 0.058 0.942 31 H 0.423 0.577 32 H 0.162 0.838 33 H 0.158 0.842 34 H 0.418 0.582 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.013 0.987 38 H 0.018 0.982 39 H 0.248 0.752 40 H 0.036 0.964 41 H 0.026 0.974 42 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.821 0.562 4.625 27.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.354 5.354 3 C 0.350 3.650 4 O -0.442 6.442 5 C -0.049 4.049 6 C -0.138 4.138 7 C -0.048 4.048 8 C -0.169 4.169 9 C 0.348 3.652 10 O -0.450 6.450 11 N -0.342 5.342 12 C 0.040 3.960 13 H 0.098 0.902 14 C -0.166 4.166 15 C 0.057 3.943 16 N -0.353 5.353 17 C -0.374 4.374 18 H 0.095 0.905 19 C -0.257 4.257 20 N -0.596 5.596 21 Si 0.806 3.194 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.195 1.195 25 C 0.000 4.000 26 C -0.016 4.016 27 N -0.170 5.170 28 H 0.075 0.925 29 H 0.131 0.869 30 H 0.076 0.924 31 H 0.260 0.740 32 H 0.180 0.820 33 H 0.176 0.824 34 H 0.257 0.743 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.031 0.969 38 H 0.036 0.964 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -27.161 1.138 4.600 27.572 hybrid contribution 1.801 0.233 -0.633 1.923 sum -25.360 1.371 3.967 25.705 Atomic orbital electron populations 1.21820 0.77598 1.04784 1.02071 1.45670 1.08830 1.08598 1.72271 1.18040 0.85862 0.84444 0.76641 1.90784 1.69333 1.32512 1.51560 1.21364 0.94341 0.90290 0.98935 1.22186 0.93866 1.00036 0.97703 1.21903 0.93776 0.98660 0.90460 1.21100 0.93218 0.96559 1.06024 1.18358 0.87328 0.83616 0.75853 1.90806 1.67670 1.35390 1.51157 1.45621 1.06611 1.08462 1.73517 1.21874 0.79026 0.99129 0.96019 0.90242 1.23014 0.97099 0.95839 1.00665 1.20962 0.92937 0.94266 0.86134 1.44672 1.10833 1.55945 1.23860 1.19404 0.91720 1.24898 1.01349 0.90467 1.25627 1.00395 0.99804 0.99854 1.70149 1.25972 1.35828 1.27692 0.85088 0.79029 0.76649 0.78609 1.21479 1.21717 1.19523 1.21960 0.87014 0.95331 0.95712 1.23394 0.88442 0.98447 0.91298 1.67581 1.10223 1.27631 1.11566 0.92452 0.86861 0.92374 0.73971 0.82017 0.82444 0.74283 0.89128 0.88502 0.96907 0.96362 0.94239 0.94620 0.95579 0.78268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.70 127.77 1.37 2.05 16 2 N -0.70 -8.73 5.70 -487.01 -2.78 -11.51 16 3 C 0.57 10.69 7.82 86.94 0.68 11.37 16 4 O -0.56 -14.12 16.31 -3.68 -0.06 -14.18 16 5 C 0.09 1.58 6.75 41.96 0.28 1.86 16 6 C -0.12 -2.06 9.62 22.58 0.22 -1.84 16 7 C -0.02 -0.40 9.71 22.72 0.22 -0.18 16 8 C -0.16 -3.11 5.90 -19.93 -0.12 -3.23 16 9 C 0.56 14.34 7.79 86.83 0.68 15.02 16 10 O -0.57 -19.86 16.05 -3.82 -0.06 -19.93 16 11 N -0.69 -15.77 5.15 -438.66 -2.26 -18.02 16 12 C 0.15 4.72 3.42 46.39 0.16 4.88 16 13 H 0.08 2.97 7.54 -2.39 -0.02 2.95 16 14 C -0.13 -3.99 6.60 31.79 0.21 -3.78 16 15 C 0.18 8.53 5.37 86.73 0.47 9.00 16 16 N -0.63 -31.91 3.39 -691.99 -2.35 -34.26 16 17 C -0.24 -13.84 10.28 84.03 0.86 -12.97 16 18 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 19 C -0.06 -3.62 5.49 84.86 0.47 -3.15 16 20 N -0.95 -56.19 10.31 21.65 0.22 -55.96 16 21 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 C 0.13 5.15 6.93 86.86 0.60 5.75 16 26 C 0.15 2.04 10.71 85.11 0.91 2.95 16 27 N -0.46 -7.03 9.52 -183.90 -1.75 -8.79 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.11 0.19 8.14 -2.39 -0.02 0.18 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.42 3.71 8.15 -92.71 -0.76 2.95 16 32 H 0.16 2.59 7.63 -2.91 -0.02 2.57 16 33 H 0.16 2.90 7.73 -2.91 -0.02 2.88 16 34 H 0.42 6.04 6.62 -92.71 -0.61 5.42 16 35 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.10 2.41 8.00 -2.38 -0.02 2.39 16 37 H 0.01 0.68 7.38 -2.39 -0.02 0.66 16 38 H 0.02 0.94 7.51 -2.39 -0.02 0.93 16 39 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.20 1.38 6.41 -2.91 -0.02 1.37 16 Total: -1.00 -77.56 356.35 -0.30 -77.86 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -0.30 Total: 9.19 kcal Atomic # 6 Polarization: 20.70 SS G_CDS: 7.00 Total: 27.71 kcal Atomic # 7 Polarization: -119.63 SS G_CDS: -8.91 Total: -128.54 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -0.12 Total: -34.10 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -77.56 -0.30 -77.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016010820.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.541 kcal (2) G-P(sol) polarization free energy of solvation -77.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds