Wall clock time and date at job start Fri Apr 10 2020 18:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34777 * 119.99847 * 2 1 4 4 O 1.21492 * 120.00192 * 359.97438 * 3 2 1 5 5 C 1.48337 * 119.99910 * 179.97438 * 3 2 1 6 6 C 1.39300 * 119.57174 * 179.97438 * 5 3 2 7 7 C 1.38451 * 119.19037 * 179.74410 * 6 5 3 8 8 C 1.39865 * 118.35892 * 0.51992 * 7 6 5 9 9 C 1.48004 * 120.46621 * 179.76169 * 8 7 6 10 10 O 1.21529 * 120.00210 * 162.18854 * 9 8 7 11 11 N 1.34781 * 119.99590 * 342.18295 * 9 8 7 12 12 C 1.47418 * 125.65102 * 354.16145 * 11 9 8 13 13 C 1.54905 * 104.83346 * 204.09067 * 12 11 9 14 14 C 1.55158 * 101.58325 * 322.98715 * 13 12 11 15 15 H 1.08998 * 110.72152 * 277.14031 * 14 13 12 16 16 N 1.46500 * 110.72131 * 153.86250 * 14 13 12 17 17 C 1.36942 * 119.99840 * 160.02649 * 16 14 13 18 18 H 1.08002 * 119.99635 * 359.97438 * 17 16 14 19 19 C 1.38807 * 120.00052 * 180.02562 * 17 16 14 20 20 N 1.31618 * 119.99853 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99978 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47467 * 89.99819 * 21 19 17 23 23 H 1.48500 * 109.47286 * 209.99897 * 21 19 17 24 24 H 1.48504 * 109.47230 * 330.00013 * 21 19 17 25 25 C 1.47027 * 125.64407 * 174.11388 * 11 9 8 26 26 C 1.39735 * 119.07346 * 359.48058 * 8 7 6 27 27 N 1.31412 * 120.71429 * 0.27635 * 26 8 7 28 28 H 1.08994 * 109.47470 * 299.99984 * 1 2 3 29 29 H 1.08995 * 109.46683 * 60.00621 * 1 2 3 30 30 H 1.09005 * 109.46817 * 180.02562 * 1 2 3 31 31 H 0.97001 * 120.00114 * 179.97438 * 2 1 3 32 32 H 1.08005 * 120.40636 * 359.97438 * 6 5 3 33 33 H 1.08006 * 120.82189 * 180.27474 * 7 6 5 34 34 H 1.09007 * 110.36457 * 322.92564 * 12 11 9 35 35 H 1.08996 * 110.36780 * 85.25006 * 12 11 9 36 36 H 1.09004 * 111.00731 * 81.06461 * 13 12 11 37 37 H 1.09004 * 111.00815 * 204.91305 * 13 12 11 38 38 H 0.96996 * 120.00167 * 340.03184 * 16 14 13 39 39 H 0.97006 * 119.99806 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.88205 * 298.39588 * 25 11 9 41 41 H 1.08999 * 109.88267 * 59.56498 * 25 11 9 42 42 H 1.08000 * 119.63809 * 180.25124 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5314 2.2194 -0.0005 5 6 3.6222 1.1672 0.0006 6 6 4.3097 2.3788 0.0000 7 6 5.6941 2.3696 0.0060 8 6 6.3503 1.1344 0.0012 9 6 7.8290 1.0702 0.0019 10 8 8.3924 0.0415 0.3198 11 7 8.5506 2.1528 -0.3502 12 6 8.0027 3.4183 -0.8712 13 6 9.1653 4.0528 -1.6746 14 6 10.3914 3.6677 -0.8052 15 1 10.5155 4.3700 0.0191 16 7 11.6062 3.6044 -1.6215 17 6 12.8365 3.6892 -1.0259 18 1 12.9110 3.8032 0.0455 19 6 13.9876 3.6297 -1.7993 20 7 15.1699 3.7117 -1.2269 21 14 13.8585 3.4347 -3.6526 22 1 13.7990 4.7753 -4.2886 23 1 15.0464 2.6999 -4.1569 24 1 12.6276 2.6737 -3.9858 25 6 10.0146 2.2673 -0.2774 26 6 5.5904 -0.0382 0.0017 27 7 4.2773 0.0130 0.0011 28 1 -0.3634 0.5138 0.8899 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8400 0.0004 32 1 3.7693 3.3139 -0.0012 33 1 6.2537 3.2934 0.0102 34 1 7.1523 3.2230 -1.5246 35 1 7.7088 4.0712 -0.0495 36 1 9.2383 3.6134 -2.6695 37 1 9.0536 5.1355 -1.7347 38 1 11.5392 3.5024 -2.5837 39 1 15.9744 3.6698 -1.7674 40 1 10.3439 2.1597 0.7561 41 1 10.4778 1.5003 -0.8980 42 1 6.0877 -0.9969 0.0021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019668316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:33 Heat of formation + Delta-G solvation = 5.339388 kcal Electronic energy + Delta-G solvation = -25613.042448 eV Core-core repulsion = 21787.388007 eV Total energy + Delta-G solvation = -3825.654441 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.27610 -40.06603 -38.97867 -37.51065 -35.15064 -34.57330 -33.18582 -32.00988 -31.58864 -30.09538 -28.35185 -27.57763 -25.42562 -24.15242 -23.56180 -22.64247 -21.19241 -20.65676 -19.80405 -18.80186 -17.96845 -17.40390 -16.92838 -16.45681 -15.98283 -15.82416 -15.72971 -15.22437 -14.80245 -14.59057 -14.32445 -13.96090 -13.88812 -13.68128 -13.35076 -13.21766 -13.12691 -12.73569 -12.71808 -12.60083 -12.23034 -11.92002 -11.40484 -10.97941 -10.86611 -10.81371 -10.70073 -10.34714 -10.33082 -10.15558 -9.85501 -9.72466 -9.70168 -9.50430 -9.09685 -8.60054 -7.46569 -5.88311 -3.27245 -0.09399 0.74133 2.08081 2.64447 2.81111 2.87860 3.30138 3.32167 3.39022 3.49920 3.65369 4.18063 4.27047 4.37151 4.48561 4.51547 4.63015 4.69930 4.79175 4.89602 5.05132 5.08019 5.17672 5.28506 5.32869 5.42923 5.47530 5.50644 5.51902 5.68431 5.73415 5.89099 6.02010 6.04644 6.10286 6.26101 6.44431 6.65012 6.90643 7.25538 7.46317 7.70218 7.84563 8.03382 8.29849 9.05774 9.77796 9.94726 11.29116 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.033136 B = 0.002345 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.806986 B =11939.346490 C =12214.492238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.716 5.716 3 C 0.571 3.429 4 O -0.529 6.529 5 C 0.089 3.911 6 C -0.117 4.117 7 C -0.066 4.066 8 C -0.150 4.150 9 C 0.568 3.432 10 O -0.529 6.529 11 N -0.605 5.605 12 C 0.091 3.909 13 C -0.145 4.145 14 C 0.178 3.822 15 H 0.077 0.923 16 N -0.736 5.736 17 C -0.256 4.256 18 H 0.093 0.907 19 C 0.010 3.990 20 N -0.927 5.927 21 Si 0.885 3.115 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.082 3.918 26 C 0.156 3.844 27 N -0.464 5.464 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.414 0.586 32 H 0.155 0.845 33 H 0.165 0.835 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.365 0.635 39 H 0.261 0.739 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.974 -4.298 1.197 28.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.367 5.367 3 C 0.356 3.644 4 O -0.405 6.405 5 C -0.049 4.049 6 C -0.137 4.137 7 C -0.092 4.092 8 C -0.156 4.156 9 C 0.355 3.645 10 O -0.407 6.407 11 N -0.338 5.338 12 C -0.032 4.032 13 C -0.184 4.184 14 C 0.066 3.934 15 H 0.094 0.906 16 N -0.378 5.378 17 C -0.385 4.385 18 H 0.111 0.889 19 C -0.186 4.186 20 N -0.573 5.573 21 Si 0.715 3.285 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.043 4.043 26 C -0.005 4.005 27 N -0.175 5.175 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.250 0.750 32 H 0.173 0.827 33 H 0.182 0.818 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.198 0.802 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -28.446 -4.886 1.543 28.903 hybrid contribution 0.795 0.116 -1.302 1.530 sum -27.651 -4.769 0.241 28.060 Atomic orbital electron populations 1.21626 0.78930 1.02680 1.02590 1.45639 1.07892 1.09111 1.74073 1.17931 0.85728 0.84120 0.76628 1.90797 1.68785 1.31270 1.49666 1.21284 0.94221 0.90029 0.99330 1.22110 0.94209 0.99569 0.97849 1.22647 0.94406 0.99093 0.93011 1.21272 0.95111 0.95424 1.03784 1.17687 0.85557 0.82841 0.78366 1.90812 1.71873 1.29249 1.48744 1.48461 1.09137 1.13294 1.62887 1.22729 0.97718 0.85331 0.97435 1.23149 0.94509 1.01312 0.99441 1.21185 0.85808 0.92632 0.93798 0.90560 1.42715 1.01689 1.88432 1.04923 1.19062 0.81572 1.43693 0.94221 0.88923 1.24695 0.95097 1.01306 0.97539 1.69700 0.96790 1.56182 1.34678 0.86561 0.77079 0.77903 0.87001 1.20912 1.21582 1.20299 1.23279 0.76694 1.02050 1.02232 1.22961 0.87898 0.98512 0.91125 1.67611 1.10187 1.28080 1.11637 0.91892 0.91884 0.90240 0.75005 0.82719 0.81775 0.90344 0.90505 0.90493 0.89360 0.80183 0.92843 0.91482 0.90520 0.80601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 10.70 59.85 0.64 1.10 16 2 N -0.72 -5.38 5.70 -67.89 -0.39 -5.77 16 3 C 0.57 5.89 7.82 -12.10 -0.09 5.79 16 4 O -0.53 -6.78 16.31 5.37 0.09 -6.69 16 5 C 0.09 0.90 6.75 -82.93 -0.56 0.34 16 6 C -0.12 -1.05 9.62 -39.11 -0.38 -1.43 16 7 C -0.07 -0.59 8.23 -38.89 -0.32 -0.91 16 8 C -0.15 -1.69 5.79 -104.73 -0.61 -2.30 16 9 C 0.57 8.24 7.73 -12.25 -0.09 8.15 16 10 O -0.53 -9.58 16.84 5.34 0.09 -9.49 16 11 N -0.60 -8.37 3.33 -171.57 -0.57 -8.94 16 12 C 0.09 0.91 4.93 -2.54 -0.01 0.90 16 13 C -0.15 -1.77 6.69 -24.58 -0.16 -1.94 16 14 C 0.18 2.97 3.59 -66.09 -0.24 2.74 16 15 H 0.08 1.28 8.12 -51.93 -0.42 0.86 16 16 N -0.74 -15.96 4.98 -51.65 -0.26 -16.22 16 17 C -0.26 -6.81 10.46 -15.06 -0.16 -6.97 16 18 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 19 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 20 N -0.93 -28.21 13.97 55.49 0.78 -27.43 16 21 Si 0.88 21.21 27.74 -169.99 -4.71 16.50 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 25 C 0.08 1.39 6.63 -3.06 -0.02 1.37 16 26 C 0.16 1.66 10.75 -17.17 -0.18 1.48 16 27 N -0.46 -4.69 9.52 -9.48 -0.09 -4.78 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.41 2.55 8.15 -40.82 -0.33 2.22 16 32 H 0.16 1.21 7.63 -52.48 -0.40 0.81 16 33 H 0.17 1.15 4.11 -52.48 -0.22 0.93 16 34 H 0.08 0.64 6.50 -51.92 -0.34 0.31 16 35 H 0.08 0.60 7.00 -51.93 -0.36 0.23 16 36 H 0.08 0.98 8.00 -51.93 -0.42 0.56 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.36 7.79 5.57 -40.82 -0.23 7.57 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.08 1.51 8.03 -51.93 -0.42 1.09 16 42 H 0.18 1.75 7.76 -52.49 -0.41 1.34 16 LS Contribution 352.26 15.07 5.31 5.31 Total: -1.00 -34.28 352.26 -7.29 -41.57 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.24 Total: 7.42 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -2.28 Total: 8.53 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: -0.53 Total: -63.14 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.18 Total: -16.19 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.71 Total: 16.50 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.28 -7.29 -41.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019668316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.909 kcal (2) G-P(sol) polarization free energy of solvation -34.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds